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Genomics
(3018)
Transcriptomics
(2023)
Proteomics
(871)
Unknown
(811)
Metabolomics
(85)
Methylation profiling
(56)
Other
(38)
Organisms
Sus scrofa
(2293)
Homo sapiens
(130)
Sus scrofa domesticus
(129)
Mus musculus
(91)
Bos taurus
(65)
Rattus norvegicus
(39)
Gallus gallus
(32)
Ovis aries
(29)
Oryctolagus cuniculus
(24)
Canis lupus familiaris
(22)
Macaca mulatta
(22)
Macaca fascicularis
(10)
Mesocricetus auratus
(8)
Staphylococcus aureus
(7)
Monodelphis domestica
(7)
Macaca nemestrina
(5)
Actinobacillus pleuropneumoniae
(4)
Drosophila melanogaster
(4)
Streptococcus suis
(3)
Sus scrofa scrofa
(3)
Actinobacillus pleuropneumoniae serovar 1 str. 4074
(2)
Bordetella bronchiseptica
(2)
Ascaris suum
(1)
Ornithodoros moubata
(1)
Campylobacter jejuni
(1)
Yersinia enterocolitica
(1)
Hymenolepis microstoma
(1)
Echinococcus granulosus
(1)
Salmo salar
(1)
Saccharomyces cerevisiae
(1)
Organisms
Sus scrofa
(2352)
Sus scrofa domesticus
(158)
Sus scrofa scrofa
(62)
pig gut metagenome
(12)
Brucella suis bv. 2
(4)
feces metagenome
(4)
pig metagenome
(2)
Callithrix jacchus
(2)
Canis lupus familiaris
(2)
Mus musculus
(2)
Homo sapiens
(2)
Corynebacterium silvaticum
(1)
Oesophagostomum dentatum
(1)
Leptospira fainei serovar Hurstbridge str. BUT 6
(1)
Cervus elaphus elaphus
(1)
Sus scrofa affinis
(1)
Campylobacter hyointestinalis subsp. hyointestinalis
(1)
Sus scrofa leucomystax
(1)
Lactiplantibacillus plantarum subsp. plantarum
(1)
Parabacteroides distasonis
(1)
Macaca fascicularis
(1)
Escherichia coli O157
(1)
Macaca mulatta
(1)
oral metagenome
(1)
Bacillus subtilis
(1)
Escherichia coli
(1)
food fermentation metagenome
(1)
Gallus gallus
(1)
Repository
ENA
(2741)
geo
(1765)
biostudies-arrayexpress
(609)
pride
(393)
PeptideAtlas
(320)
MetaboLights
(70)
iProX
(66)
MassIVE
(52)
EVA
(33)
jPOST
(9)
MetabolomicsWorkbench
(9)
GNPS
(6)
PAXDB
(6)
EGA
(4)
PanoramaPublic
(4)
ExpressionAtlas
(3)
GPMDB
(1)
Tissue
Spleen
(8)
Colon
(5)
Blood
(4)
Jejunum
(2)
Alveolus of lung
(1)
Corpus callosum
(1)
Mesenteric lymph node
(1)
Brainstem
(1)
Hippocampal formation
(1)
Occipital cortex
(1)
Tonsil
(1)
Omentum
(1)
Caecum
(1)
Penis
(1)
Duodenum
(1)
Epididymis
(1)
Medulla oblongata
(1)
Pons
(1)
Stomach
(1)
Frontal cortex
(1)
Cortex of kidney
(1)
Pituitary gland
(1)
Uterus
(1)
Skeletal muscle tissue
(1)
Ileum
(1)
Heart left ventricle
(1)
Dorsal plus ventral thalamus
(1)
Cerebellum
(1)
Amygdala
(1)
Vaginal epithelium
(1)
Disease
Disease free
(9)
Cardiovascular system disease
(7)
Wounds and Injuries
(7)
Duchenne muscular dystrophy
(6)
Myocardial ischemia
(5)
Sepsis
(3)
Breast cancer
(3)
Influenza
(3)
Male infertility
(3)
Permanent neonatal diabetes mellitus
(3)
Colon cancer
(2)
Diabetes mellitus
(2)
Infertility
(2)
Laron syndrome
(2)
Pseudorabies virus infected
(1)
Cutaneous melanoma
(1)
None
(1)
Control
(1)
Normal
(1)
Not Available
(1)
Anemia
(1)
Atherosclerosis
(1)
Atrial fibrillation
(1)
Bacterial sepsis
(1)
Bovine tuberculosis
(1)
Cartilage disease
(1)
Cervix carcinoma
(1)
Charcot-Marie-Tooth disease
(1)
Ciliopathy
(1)
Coronavirus infectious disease
(1)
Technology Type
Mass Spectrometry
(401)
Shotgun proteomics
(222)
Bottom-up proteomics
(56)
Mass spectrometry
(49)
Data-dependent acquisition
(47)
Gel-based experiment
(29)
Affinity purification coupled with mass spectrometry proteomics
(22)
Data-independent acquisition
(21)
Top-down proteomics
(19)
Mass spectrometry assay
(16)
SWATH MS
(15)
Chemical cross-linking coupled with mass spectrometry proteomics
(12)
ESI
(6)
HDMSE
(6)
SRM/MRM
(5)
NMR spectroscopy
(4)
All-ion fragmentation
(4)
MSE
(4)
Mass spectrometry imaging
(4)
EI
(2)
Metaproteomics
(2)
Proteogenomics
(2)
NMR spectroscopy assay
(1)
NMR
(1)
DiaPASEF
(1)
Instrument Platform
Illumina HiSeq 2500
(28)
Illumina NovaSeq 6000
(19)
Illumina HiSeq 2000
(17)
Illumina HiSeq 4000
(10)
NextSeq 2000
(4)
NextSeq 500
(4)
Illumina Genome Analyzer II
(3)
Illumina HiScanSQ
(3)
Ion Torrent S5 XL
(2)
NextSeq 550
(2)
10x Genomics Chromium Controller, PCR thermocycler, Agilent 2100 Bioanalyzer with High Sensitivity DNA chip (for quality control)
(1)
Water bath (for enzymatic dissociation), cell strainer (70-μm), benchtop centrifuge, automated cell counter/hemocytometer, biological safety cabinet
(1)
Sterile surgical instrument set (scalpels, tissue forceps, dissection scissors), animal operating table, biological safety cabinet
(1)
Macbook Pro 2018
(1)
BRB-seq tool and pipeline
(1)
NucleoSpin RNA kit (Macherey-Nagel)
(1)
Gilson Minipuls 3
(1)
Nanodrop 2000c spectrophotometer
(1)
NEB
(1)
UC
(1)
Lightwave
(1)
Truseq RNA v2
(1)
None
(1)
Affymetrix GeneChip Scanner 3000 7G
(1)
Illumina Genome Analyzer IIx
(1)
Axon- GenePix4000B
(1)
ScanArray Express HT [PerkinElmer]
(1)
GenePix 4000B [Axon Instruments]
(1)
Illumina NovaSeq X
(1)
Ion Torrent PGM
(1)
Publication Date
2025
(261)
2023
(249)
2022
(222)
2021
(217)
2024
(191)
2020
(188)
2026
(172)
2013
(149)
2016
(147)
2014
(142)
2015
(140)
2019
(137)
2012
(131)
2018
(127)
2017
(117)
2010
(112)
2011
(103)
2009
(77)
2008
(50)
2007
(26)
2006
(10)
2005
(6)
2004
(6)
2003
(3)
UNIPROT ID/AC
1433E_SHEEP
(6)
1433Z_SHEEP
(6)
6PGD_SHEEP
(6)
A1AT_SHEEP
(6)
A8DR93_SHEEP
(6)
AL1A1_SHEEP
(6)
ALBU_SHEEP
(6)
ANT3_SHEEP
(6)
ANXA2_SHEEP
(6)
CERU_SHEEP
(6)
COF1_SHEEP
(6)
FETUA_SHEEP
(6)
G3P_SHEEP
(6)
HBB_SHEEP
(6)
IDHC_SHEEP
(6)
PDXK_SHEEP
(6)
PLMN_SHEEP
(6)
SODC_SHEEP
(6)
THIO_SHEEP
(6)
TTHY_SHEEP
(6)
W5NPN4_SHEEP
(6)
W5NQ45_SHEEP
(6)
W5NUE3_SHEEP
(6)
W5NUN8_SHEEP
(6)
W5NUX8_SHEEP
(6)
W5NVC9_SHEEP
(6)
W5NXN2_SHEEP
(6)
W5NY95_SHEEP
(6)
W5NYA7_SHEEP
(6)
W5P1X9_SHEEP
(6)
ENSEMBL ID
ENSSSCG00000030893
(4)
CHEBI ID
CHEBI:15891
(13)
CHEBI:16919
(12)
CHEBI:17368
(12)
CHEBI:16335
(10)
CHEBI:17750
(10)
CHEBI:16704
(10)
CHEBI:17596
(10)
CHEBI:16040
(9)
CHEBI:18257
(9)
CHEBI:16708
(9)
CHEBI:17562
(9)
CHEBI:15428
(9)
CHEBI:17154
(9)
CHEBI:16235
(9)
CHEBI:16015
(9)
CHEBI:16737
(9)
CHEBI:15611
(8)
CHEBI:16742
(8)
CHEBI:17754
(8)
CHEBI:15741
(8)
CHEBI:17268
(8)
CHEBI:71466
(8)
CHEBI:17821
(8)
CHEBI:15727
(8)
CHEBI:17568
(8)
CHEBI:17509
(8)
CHEBI:7916
(8)
CHEBI:17203
(8)
CHEBI:36274
(8)
CHEBI:16359
(8)
Metabolite Name
Hypoxanthine
(14)
Betaine
(12)
Taurine
(12)
Creatine
(12)
Creatinine
(11)
Cytosine
(10)
Glycerophosphocholine
(10)
Carnosine
(9)
L-Proline
(9)
L-Arginine
(9)
Cholic acid
(9)
Pipecolic acid
(9)
Propionylcarnitine
(8)
Niacinamide
(8)
L-Threonine
(8)
Choline
(8)
Tauroursodeoxycholic acid
(8)
Deoxycholic acid
(8)
Oleamide
(8)
Sphinganine
(8)
Guanine
(8)
L-Glutamine
(8)
Guanosine
(8)
L-Carnitine
(8)
Chavicol
(7)
PC(16:0/16:0)
(7)
Genistein
(7)
L-Lysine
(7)
Benzaldehyde
(7)
Hydroquinone
(7)
First Public Date
2014
(369)
2024
(283)
2025
(276)
2023
(250)
2022
(224)
2026
(215)
2021
(201)
2019
(180)
2020
(177)
2017
(156)
2018
(142)
2016
(102)
2015
(95)
2013
(70)
2012
(1)
Classification
bacteria
(8)
Modification
2x(15)N labeled L-lysine
(1)
4
(1)
4x(15)N labeled L-arginine
(1)
Not available
(1)
Study type
Transcription profiling by array
(406)
RNA-seq of coding RNA
(91)
RNA-seq of non coding RNA
(23)
Comparative genomic hybridization by array
(16)
Unknown experiment type
(11)
Methylation profiling by high throughput sequencing
(9)
Transcription profiling by SAGE
(6)
RNA-seq of total RNA
(6)
Transcription profiling by tiling array
(5)
Bisulfite-seq
(5)
RNA-seq of coding RNA from single cells
(5)
Genotyping by array
(4)
MicroRNA profiling by array
(4)
Other
(3)
ChIP-seq
(3)
Animal - High-throughput sequencing
(2)
ChIP-chip by array
(2)
MicroRNA profiling by high throughput sequencing
(2)
DNA-seq
(2)
Baseline
(1)
Animal - One-color microarray
(1)
ATAC-seq
(1)
CUT&RUN
(1)
Release Date
2022
(112)
2014
(101)
2021
(98)
2023
(94)
2013
(94)
2015
(93)
2016
(90)
2012
(87)
2020
(84)
2024
(77)
2010
(77)
2025
(75)
2011
(63)
2019
(55)
2018
(54)
2017
(47)
2009
(43)
2008
(26)
2026
(17)
2007
(17)
2006
(6)
2005
(5)
2004
(3)
2003
(1)
2000
(1)
Lab affiliation
Ludwig-Maximilians-Universität München Genzentrum Laboratory for Functional Genome Analysis Feodor-Lynen-Str. 25 D-81377 München
(7)
He JunJun
(5)
Laboratory for Functional Genome Analysis (LAFUGA), Gene Center, LMU Munich, 81377 Munich, Germany
(5)
LIST-ERIN-BEAP Bascharage1 Luxembourg
(4)
Department of Experimental and Translational Ophthalmology, University Medical Center, Johannes Gutenberg University, Mainz, Germany
(3)
Department of Medicine and Animal Surgery, Faculty of Veterinary Science, University of Murcia, Spain
(3)
Laboratory for Functional Genome Analysis Genzentrum Ludwig-Maximilians-Universität München Feodor-Lynen-Str. 25 D-81377 München Germany
(3)
Research Unit Protein Science, Helmholtz Center Munich, German Research Center for Environmental Health GmbH, Germany
(3)
Aalborg University
(2)
Biomolecular Mass Spectrometry and Proteomics, Bijvoet Centre for Biomolecular Research and Utrecht Institute for Pharmaceutical Sciences, Utrecht University, The Netherlands
(2)
Centro Nacional de Investigaciones Cardiovasculares Carlos III (CNIC)
(2)
China agricultural university, preventive veterinary medicine
(2)
College of Veterinary Medicine, Huazhong Agricultural University
(2)
College of Veterinary Medicine, Northwest A&F University, Yangling, Shaanxi 712100, P.R. China
(2)
DIVAS, University of Milan
(2)
Department of Animal Anatomy and Physiology, Faculty of Biology and Biotechnology, University of Warmia and Mazury
(2)
Department of Biotechnology, Stem cell and biomaterial engineering Lab, Yonsei University, Republic of Korea.
(2)
Department of Chemistry and Biochemistry, The University of Texas at Dallas
(2)
Department of Microbiology and Immunology, College of Veterinary Medicine, China Agricultural University, Beijing, China.
(2)
ETH Zurich, Department of Biology, Institute of Molecular Health Sciences
(2)
Faculty of Medicine and Health Technology, Tampere University, Tampere, Finland, and Department of Cardiothoracic Surgery, Jena University Hospital, Jena, Germany
(2)
Friedrich-Loeffler-Institut
(2)
III. Department of Medicine, University Medical Center Hamburg-Eppendorf, Hamburg, Germany
(2)
Institute of Diabetes and Regeneration Research, Helmholtz Munich, Neuherberg, Germany
(2)
Institute of Molecular Virology and Cell Biology, Friedrich-Loeffler-Institut, Federal Research Institute for Animal Health, Südufer 10, 17493 Greifswald-Insel Riems,Germany
(2)
Internal Diseases Clinic, Faculty of Veterinary Medicine, University of Zagreb, Zagreb, Croatia
(2)
King's College London - Cardiovascular Division
(2)
Lanzhou Veterinary Research Institute
(2)
Nanjing Agricultural University
(2)
South China Agricultural University
(2)
Tags
xref:PubMed:33758196
(8)
pathogen
(8)
pathogen:bacterium
(8)
xref:PubMed:38262957
(7)
xref:PubMed:24699212
(6)
xref:PubMed:33798453
(5)
xref:PubMed:32341164
(5)
xref:PubMed:35550009
(4)
xref:PubMed:29906208
(4)
xref:PubMed:34678203
(4)
xref:PubMed:36175587
(4)
xref:PubMed:34490028
(4)
xref:PubMed:37311769
(4)
xref:PubMed:28821716
(4)
xref:PubMed:28327084
(4)
xref:PubMed:36768720
(3)
xref:PubMed:31373884
(3)
xref:PubMed:29050212
(3)
xref:PubMed:37821590
(3)
xref:PubMed:42140199
(3)
xref:PubMed:35503431
(3)
xref:PubMed:27561200
(3)
xref:PubMed:40091686
(3)
xref:PubMed:25189197
(3)
xref:PubMed:22759919
(3)
xref:PubMed:22617290
(3)
xref:PubMed:34871328
(3)
xref:PubMed:41643676
(3)
xref:PubMed:31150541
(3)
xref:PubMed:33911273
(3)
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Sus scrofa
Sus scrofa microRNA sequencing
PRJNA276745
|
ENA
Cite
Sus scrofa
Sus scrofa Genome sequencing
PRJNA254936
|
ENA
Cite
Sus scrofa
Sus scrofa Genome sequencing
PRJNA886395
|
ENA
Cite
Sus scrofa
Sus scrofa Metagenomic assembly
PRJNA980129
|
ENA
Cite
Sus scrofa scrofa
Sus scrofa Raw sequence reads
PRJNA723116
|
ENA
Cite
Sus scrofa scrofa
Sus scrofa scrofa Transcriptome or Gene expression
PRJNA321932
|
ENA
Cite
Sus scrofa
Sus scrofa Raw sequence reads
PRJNA318543
|
ENA
Cite
Sus scrofa
Sus scrofa Raw sequence reads
PRJNA316369
|
ENA
Cite
Sus scrofa
Sus scrofa Raw sequence reads
PRJNA1006786
|
ENA
Cite
Sus scrofa
Sus scrofa Raw sequence reads
PRJNA1249214
|
ENA
Cite
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