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TranscriptomicsYeast background with high-concentration spikes
Microarray measurements are susceptible to error caused by cross-hybridization and bulk hybridization. To characterize the effect of these off-target interactions, we analyzed samples made from baseline (S. cerevisiae) alone or mixed with a high-concentration 1kb spike. The spike is a 1 kb sequence ...
ORGANISM(S): Saccharomyces cerevisiae 
2010-03-21 | E-GEOD-16980 | biostudies-arrayexpress
TranscriptomicsTranscription profiling of human normal primary trophoblasts from placenta
Primary cultures of human trophoblasts were established from normal, term placenta. Cells were treated five hours after plating. This sample was treated with 1 uM GW7845. RNA was extracted after 48 hours of treatment using Tri-reagent. Each sample was pooled from three individual placentas prior to ...
ORGANISM(S): Homo sapiens 
2008-06-11 | E-GEOD-1302 | biostudies-arrayexpress
UnknownTumorTracer: a method to identify the tissue of origin from the somatic mutations of a tumor specimen.
Not available
S-EPMC4590711 | biostudies-literature
Genomicsena-DATASET-SC-21-07-2014-10:55:39:527-89 - samples
NSCLC targeted.
EGAD00001000889 | EGA
Genomicsena-DATASET-SC-21-07-2014-10:52:30:961-88 - samples
NSCLC WGS.
EGAD00001000888 | EGA
Genomicsena-DATASET-GENE-CAO-08-02-2016-11:04:25:039-253 - samples
Multi-region Illumina whole-exome and/or whole-genome sequencing on tumor regions collected from early-stage NSCLC patients who underwent definitive surgical resection prior to receiving adjuvant therapy. Patients covered by this dataset: L012, L013, L015, L017
EGAD00001001918 | EGA
Genomicsena-DATASET-TRACERX-25-07-2014-12:27:19:910-271 - samples
Multi-region Illumina whole-exome and/or whole-genome sequencing on tumor regions collected from early-stage NSCLC patients who underwent definitive surgical resection prior to receiving adjuvant therapy. Detected variants were validated on Ion AmpliSeq™ Custom Panel and/or Comprehensive Cancer Gen...
EGAD00001000900 | EGA
GenomicsTRACERx: TRAcking non-small cell lung Cancer Evolution through therapy (Rx). Pilot Study. Multi-region sequencing of early-stage NSCLCs.
Deciphering the complexity of non-small cell lung cancer (NSCLC) evolutionary histories may elucidate the basis for its dismal outcome. We performed multi-region sequencing of early-stage NSCLCs. Spatial dissection revealed branched tumor evolution, with driver mutations occurring before and after s...
EGAS00001000809 | EGA
GenomicsSpatial and temporal diversity in genomic instability processes define early stage lung cancer evolution.
Deciphering the complexity of non-small cell lung cancer (NSCLC) evolutionary histories may elucidate the basis for its dismal outcome. We performed multi-region sequencing on 25 regions from seven early-stage NSCLCs. Spatial dissection revealed branched tumor evolution, with driver mutations occurr...
EGAS00001000840 | EGA
GenomicsWTSI CGP Data access committee
Data Access Committee EGAC00001000000
EGAC00001000000 | EGA
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