Taa - OmicsDI

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Unknown (1533)
Genomics (195)
Transcriptomics (160)
Proteomics (50)
Metabolomics (6)
Other (5)
Genomic (2)
Methylation profiling (2)
Multiomics (2)

Organisms

Homo sapiens (84)
Mus musculus (78)
Rattus norvegicus (17)
Danio rerio (6)
Caenorhabditis elegans (4)
Arabidopsis thaliana (4)
Drosophila melanogaster (3)
Schizosaccharomyces pombe (2)
Bos taurus (2)
synthetic construct (2)
Cichorium intybus (1)
Tetrahymena thermophila (1)
Notophthalmus viridescens (1)
Leishmania mexicana (1)
Pan troglodytes (1)
Toxoplasma gondii (1)
Bacillus subtilis (1)
Enterococcus faecalis (1)
Butyrivibrio sp. AE3003 (1)
Staphylococcus epidermidis AG42 (1)
Lachnoclostridium phytofermentans KNHs2132 (1)
Exiguobacterium antarcticum DSM 14480 (1)
Exiguobacterium oxidotolerans JCM 12280 (1)
Exiguobacterium acetylicum DSM 20416 (1)
Exiguobacterium aurantiacum DSM 6208 (1)
Clostridioides mangenotii LM2 (1)
Lachnospiraceae bacterium AC2012 (1)
Flavimarina sp. Hel_I_48 (1)
Prevotella sp. HUN102 (1)
Exiguobacterium chiriqhucha (1)

Organisms

Mus musculus (56)
Homo sapiens (37)
Rattus norvegicus (12)
Danio rerio (4)
mouse gut metagenome (4)
Tetropium staudingeri (1)
Terriglobus sp. TAA 43 (1)
synthetic Escherichia coli Syn61 (1)
Arge bella (1)
Analcellicampa danfengensis (1)
Acidobacteriaceae bacterium TAA 166 (1)
Anthaxia chinensis (1)
Melanabropsis tianmuica (1)
Libelloides sibiricus (1)
Amphiophiura penichra (1)
Verrucosispora sp. TAA-831 (1)
Sus scrofa (1)
Saccharomyces cerevisiae (1)
Canis lupus familiaris (1)
Escherichia coli (1)

Repository

ENA (166)
biostudies-arrayexpress (99)
geo (93)
pride (22)
MassIVE (11)
EGA (9)
jPOST (8)
MetaboLights (6)
dbGaP (2)
iProX (2)
NODE (1)
PanoramaPublic (1)
PeptideAtlas (1)

Tissue

Cell culture (4)
Liver (3)
Cell suspension culture (2)
Hepatocyte (2)
Epithelial cell (2)
Aorta thoracica (1)
Aorta (1)
Breast cancer cell (1)
Pancreatic islet (1)
Sperm (1)
Breast (1)
HEK-293T cell (1)
Breast cancer cell line (1)
Skin (1)
Islet of Langerhans (1)
Diploid cell (1)
Blood plasma (1)
Testis (1)
Primary cell (1)
Permanent cell line cell (1)
Blood cell (1)
Blood (1)

Disease

Cholangiocarcinoma (2)
Cardiovascular system disease (2)
Breast cancer (2)
Aortic aneurysm (1)
HPV positive (1)
4T1 tumor-bearing (1)
Rett syndrome (1)
Phyllodes tumor (1)
Giant cell glioblastoma (1)
Abdominal aortic aneurysm (1)
Leukemia (1)
Lung cancer (1)
Dilatation of the ascending aorta (1)
Hepatitis B (1)
Infertility (1)
Hepatocellular carcinoma (1)
Thoracic aortic aneurysm (1)
Multiple myeloma (1)
Melanoma (1)
Acute leukemia (1)

Technology Type

Mass Spectrometry (22)
Shotgun proteomics (10)
Affinity purification coupled with mass spectrometry proteomics (6)
Mass spectrometry (4)
SWATH MS (2)
Illumina 450K array, ILLUMINA, Illumina HiSeq 2000, NextSeq 500 (1)
ZCall, Illumina HumanExome-12v1_A-GenCall (1)
Illumina HiSeq 2500 (1)
NMR spectroscopy (1)
Mass spectrometry assay (1)
Proteogenomics (1)
Immunopeptidomics (1)
HDMSE (1)
SRM/MRM (1)
Gel-based experiment (1)
Data-dependent acquisition (1)
Bottom-up proteomics (1)

Instrument Platform

NextSeq 500 (4)
Illumina NovaSeq 6000 (3)
Q Exactive (3)
Liquid Chromatography MS - negative - reverse phase (3)
Manual (2)
10x Genomics Chromium (2)
GenePix 4000B [Axon Instruments] (2)
Illumina HiSeq 2500 (2)
LTQ (2)
LTQ XL (2)
Orbitrap Fusion Lumos (2)
Liquid Chromatography MS - positive - reverse phase (2)
CeMM HPC (1)
ScanArray 5000 [PerkinElmer] (1)
GenePix 4000A [Axon Instruments] (1)
N/a (1)
Illumina iSeq 100 (1)
Illumina MiSeq (1)
NextSeq 550 (1)
Illumina HiSeq 4000 (1)
In-house built IMS-MS with Agilent 6538 QTOF MS (1)
SLIM TWIMS-MS coupled with Agilent 6224 TOF (1)
RapidFire 365 coupled with Agilent 6560 Ion Mobility QTOF (1)
MicrOTOF-Q II (1)
Synapt G2 HDMS (1)
Bruker timsTOF Pro (1)
Orbitrap Exploris 480 (1)
Orbitrap Fusion (1)
Orbitrap Eclipse (1)
Bruker (1)

Publication Date

2023 (28)
2026 (21)
2025 (21)
2022 (21)
2014 (19)
2015 (15)
2024 (14)
2021 (13)
2013 (13)
2010 (12)
2008 (11)
2020 (10)
2016 (10)
2017 (6)
2011 (5)
2009 (4)
2012 (3)
2019 (3)
2018 (3)
2007 (2)
2006 (2)
2004 (1)

UNIPROT ID/AC

WBGene00019780 (1)
Q9XXQ9 (1)
Q9XX20 (1)
Q9XWP2 (1)
Q9XWI4 (1)
Q9XWB4 (1)
Q9XVS8 (1)
Q9XVM6 (1)
Q9U379 (1)
Q9U2B8 (1)
Q9U1X8 (1)
Q9TYL0 (1)
Q9NA40 (1)
Q9N3W5 (1)
Q9N3W2 (1)
Q9N3T3 (1)
Q9N3Q5 (1)
Q9N3P6 (1)
Q9N3C8 (1)
Q9N394 (1)
Q9GYH8 (1)
Q95Y82 (1)
Q95Y74 (1)
Q95X41 (1)
Q95QE8 (1)
Q94401 (1)
Q94277 (1)
Q94241 (1)
Q94173 (1)
Q93892 (1)

CHEBI ID

CHEBI:36259 (4)
CHEBI:9410 (4)
CHEBI:16525 (4)
CHEBI:80774 (4)
CHEBI:17687 (4)
CHEBI:28865 (4)
CHEBI:28834 (4)
CHEBI:16755 (4)
CHEBI:9907 (4)
CHEBI:16359 (4)
CHEBI:37998 (3)
CHEBI:27471 (3)
CHEBI:180956 (3)
CHEBI:16325 (3)
CHEBI:15724 (2)
CHEBI:70958 (2)
CHEBI:17724 (2)
CHEBI:30746 (2)
CHEBI:15698 (2)
CHEBI:18300 (2)
CHEBI:27480 (2)
CHEBI:43355 (2)
CHEBI:60645 (2)
CHEBI:50129 (2)
CHEBI:15891 (2)
CHEBI:15611 (2)
CHEBI:17287 (2)
CHEBI:18132 (2)
CHEBI:17752 (2)
CHEBI:16344 (2)

Metabolite Name

GLCA (3)
TLCA (3)
GDCA (3)
GCDCA (3)
TDCA (3)
TCDCA (3)
TUDCA (3)
GCA (3)
TCA (3)
LCA (3)
DCA (3)
CDCA (3)
UDCA (3)
CA (3)
N-acetylglutamate (2)
Maleate (1)
2-Hydroxy-3-methylbutyrate (1)
EBD2839740 (1)
Trans-aconitate (1)
3-Phenyllactate (1)
N-phenylacetylglycine (1)
Phenylacetyl-L-methionine (1)
Phenylacetyl-L-phenylalanine (1)
Phenylacetyl-L-tryptophan (1)
Methylamine (1)
Guanidoacetate (1)
3-Indoxylsulfate (1)
Gallate (1)
Propionate (1)
3-Hydroxybutyrate (1)

First Public Date

2023 (29)
2026 (25)
2024 (22)
2022 (20)
2025 (17)
2021 (13)
2019 (10)
2020 (9)
2014 (6)
2018 (5)
2017 (3)
2015 (3)
2013 (3)
2016 (1)

Classification

bacteria (1)

Study type

Transcription profiling by array (57)
RNA-seq of coding RNA (6)
Proteomic profiling by array (5)
RNA-seq of non coding RNA (5)
Comparative genomic hybridization by array (3)
Methylation profiling by array (3)
RNA-seq of coding RNA from single cells (3)
RNA-seq of total RNA (3)
ChIP-chip by array (2)
ChIP-seq (2)
DNA-seq (2)
Methylation profiling by high throughput sequencing (2)
ChIP-chip by tiling array (1)
Whole chromosome random sequencing (1)
Cell line - High-throughput sequencing (1)
RNAi profiling by array (1)
Ribo-seq (1)

Release Date

2021 (217)
2022 (186)
2023 (167)
2019 (149)
2020 (139)
2025 (124)
2024 (124)
2016 (96)
2018 (92)
2017 (89)
2014 (50)
2015 (35)
2012 (27)
2013 (26)
2026 (24)
2010 (22)
2011 (16)
2008 (12)
2009 (11)
2006 (8)
2007 (6)
2004 (2)
2005 (2)
2003 (2)
2001 (2)
1997 (2)
2000 (1)
1998 (1)

Lab affiliation

King's British Heart Foundation Centre, King's College London, London, UK (1)
Department of Cardiovascular Surgery, University Heart & Vascular Center Hamburg, Germany (1)
Department of Fundamental Neurosciences, University of Lausanne, Lausanne, Switzerland (1)
School of Natural Sciences, and ARC Centre of Excellence in Synthetic Biology, Macquarie University, Sydney, Australia. The Australian Genome Foundry, Sydney, Australia. (1)
Hepatology Program, CIMA, University of Navarra. Avda. Pio XII, n55. 31008 Pamplona, Spain. (1)
Department of Biochemistry, Ghent University, Belgium (1)
BGI-Shenzhen, Shenzhen, 518083,China (1)
King Faisal Specialist Hospital and Research Center (1)
Assistant Professor, Cedars-Sinai Medical Center, Cardiology (1)
Leiden University Medical Center, Center for Proteomics and Metabolomics, PO Box 9600, Postal zone P1-Q, 2300 RC Leiden, The Netherlands (1)
School of Basic Medical Sciences, Anhui Medical University, (1)
School of Medicine, University of St Andrews, St Andrews, Fife, KY16 9TF, Scotland, UK. (1)
Molecular Cell Biolody, Weizmann Institute of Science. (1)
The University of Texas, MD Anderson Cancer Center, Department of Melanoma Med Oncology, Houston, TX 77045 (1)
Dep. of Oncology-Pathology, Karolinska Institutet, Scilifelab, Stockholm, Sweden (1)
Department of pathophysiology, School of Basic Medical Sciences, Wuhan University, Wuhan 430071, China (1)
Proteomics Unit CNIC, Madrid, Spain (1)
Experiment Center for Teaching and Learning, Shanghai University of Traditional Chinese Medicine, Shanghai 201210, China. (1)
Fudan University (1)
Oncology-Pathology, Scilifelab, Karolinska Institutet, Stockholm, Sweden (1)
Proteomics Center, Erasmus MC (1)
Department of oncology UNIL CHUV Ludwig Institute for Cancer Research Lausanne Office B25A/04/94 Rue du Bugnon 25a, CH-1005 Lausanne (1)

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Verrucosispora sp. TAA-831

Verrucosispora sp. TAA-831 Genome sequencing

PRJNA1261680 | ENA

A time-course study of thioacetamide (TAA)-induced liver fibrosis in rats

The aim is to characterize rat liver fibrosis induced by thioacetamide (TAA). To induce hepatic fibrosis, Male Sprague Dawley rats (9-12 weeks of age and 380-420 g of weight upon arrival, supplied by Beijing Vital River laboratory animal Co., Ltd.) were treated with thioacetamide (TAA). Rat liver sa...

ORGANISM(S): Rattus norvegicus

2021-09-29 | E-MTAB-10547 | biostudies-arrayexpress

Acidobacteriaceae bacterium TAA 166

PRJNA190839 | ENA

TAA Cyprus

Novel variants in TAA patinets

PRJEB29481 | ENA

Terriglobus sp. TAA 43

Terriglobus sp. TAA 43 Genome sequencing and assembly

PRJNA208396 | ENA

The effect of vitamin D supplementation on tumorigenesis in a thioacetamide (TAA)-induced rat intrahepatic cholangiocarcinoma model

In this study, we investigated the effect of vitamin D supplementation on tumorigenesis in a thioacetamide (TAA)-induced rat intrahepatic cholangiocarcinoma model as vitamin D is known to have a spectrum of anticancer activities. Using PET, we found that tumor formation and progression were suppress...

ORGANISM(S): Rattus norvegicus

2015-08-01 | E-GEOD-48961 | biostudies-arrayexpress

Advanced Study of Aortic Pathology (ASAP)

BACKGROUND: The vast majority of thoracic aortic aneurysms (TAAs) are observed either together with a bicuspid aortic valve (BAV), a common congenital disorder, or in idiopathic cases such as patients with a normal tricuspid aortic valve (TAV). The main objective of our study was to identify shared ...

ORGANISM(S): Homo sapiens

2016-01-15 | E-GEOD-26155 | biostudies-arrayexpress

Transcriptomic profile of zebrafish liver cells in thioacetamide (TAA) model

PRJNA607563 | ENA

A time-course study of thioacetamide (TAA)-induced liver fibrosis in rats

PRJEB45544 | ENA

Next Generation Sequencing Facilitates Quantitative Analysis of Control and rhCYGB treated liver transcriptomes [TAA]

PRJNA659012 | ENA