Tachyzoites - OmicsDI

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Unknown (501)
Genomics (137)
Transcriptomics (98)
Proteomics (85)
Metabolomics (7)
Other (4)
Methylation profiling (1)

Organisms

Toxoplasma gondii (77)
Schizophyllum commune H4-8 (77)
Mycobacterium tuberculosis SP7 (77)
Mycobacterium tuberculosis SP10 (77)
Mycobacterium tuberculosis SP13 (77)
Mycobacterium tuberculosis SP22 (77)
Chlamydomonas reinhardtii (77)
Enterococcus mundtii CRL35 (77)
Oncorhynchus tshawytscha (77)
Pseudomonas canadensis (77)
Influenza A virus (A/California/04/2009(H1N1)) (77)
Pseudomonas aeruginosa PAO1H2O (77)
Human alphaherpesvirus 1 strain 17 (77)
Mycobacterium tuberculosis SP1 (77)
Marchantia polymorpha subsp. ruderalis (77)
Methylocystis sp. (77)
Exiguobacterium sp. SH31 (77)
Homo sapiens (19)
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synthetic construct (2)
Toxoplasma (2)
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cellular organisms (2)
Locusta migratoria (1)
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Organisms

Toxoplasma gondii (63)
Homo sapiens (9)
Mus musculus (4)
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Toxoplasma (2)
Besnoitia besnoiti (1)
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Toxoplasma gondii RH (1)
Sus scrofa (1)
Rattus norvegicus (1)
Bos taurus (1)

Repository

ENA (120)
pride (77)
geo (72)
biostudies-arrayexpress (48)
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jPOST (2)

Tissue

Cell culture (16)
Fibroblast (9)
Tachyzoite (7)
Whole body (4)
Foreskin fibroblast cell line (2)
Macrophage (2)
Blood serum (2)
HFF-1 cell (1)
Foreskin fibroblast (1)
Secretion (1)
Excretion (1)
Seedling (1)
Blood cell (1)

Disease

Toxoplasmosis (18)
Congenital toxoplasmosis (1)
Disease free (1)

Technology Type

Mass Spectrometry (77)
Shotgun proteomics (47)
Affinity purification coupled with mass spectrometry proteomics (18)
Bottom-up proteomics (7)
Mass spectrometry (5)
Gel-based experiment (3)
Mass spectrometry assay (2)
Proteogenomics (1)
Mass spectrometry imaging (1)
HDMSE (1)
Data-independent acquisition (1)
Data-dependent acquisition (1)

Instrument Platform

Liquid Chromatography MS - negative - reverse phase (4)
Gas Chromatography MS - positive (3)
Liquid Chromatography MS - positive - reverse phase (3)
Illumina HiSeq 4000 (2)
Liquid Chromatography MS - negative - hilic (2)
Agilent 2100 Bioanalyzer (1)
Illumina HiSeq 2000 (1)
Hybrid Quadrupole-Orbitrap high resolution mass spectrometer (Q Exactive Orbitrap; Thermo Scientific) (1)
Liquid Chromatography MS - negative - HILIC (1)
Liquid Chromatography MS - positive - HILIC (1)
Liquid Chromatography MS - positive - hilic (1)

Publication Date

2024 (26)
2023 (25)
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2011 (15)
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2005 (12)
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2019 (8)
2012 (6)
2010 (6)
2014 (5)
2018 (5)
2017 (5)
2013 (4)
2008 (4)
2015 (3)
2007 (2)
2006 (2)
2016 (2)
2009 (1)

CHEBI ID

CHEBI:7916 (4)
CHEBI:30769 (4)
CHEBI:15891 (3)
CHEBI:16865 (3)
CHEBI:37024 (3)
CHEBI:16856 (3)
CHEBI:15741 (3)
CHEBI:6650 (3)
CHEBI:18237 (3)
CHEBI:17533 (3)
CHEBI:28846 (2)
CHEBI:42111 (2)
CHEBI:17549 (2)
CHEBI:141588 (2)
CHEBI:15531 (2)
CHEBI:30831 (2)
CHEBI:24266 (2)
CHEBI:7125 (2)
CHEBI:18183 (2)
CHEBI:27997 (2)
CHEBI:28875 (2)
CHEBI:18066 (2)
CHEBI:17311 (2)
CHEBI:15468 (2)
CHEBI:28716 (2)
CHEBI:16113 (2)
CHEBI:17200 (2)
CHEBI:44215 (2)
CHEBI:33508 (2)
CHEBI:15784 (2)

Metabolite Name

PC 32:2|PC 16:1_16:1 (2)
PC 28:0|PC 14:0_14:0 (2)
PE 34:2|PE 16:1_18:1 (2)
PE 36:2|PE 18:1_18:1 (2)
Acetyl-CoA (2)
Beta-Nicotinamide adenine dinucleotide (2)
Pantothenate (2)
DCDP (2)
Acetylcarnitine (2)
Succinate (2)
Pyruvate (2)
Malate (2)
Lactate (2)
Fumarate (2)
Citrate (2)
CDP (2)
Pyroglutamic acid (2)
Methylnicotinamide (1)
Ribose-phosphate (1)
D-sedoheptulose-1-phosphate (1)
N-acetyl-glucosamine-6-phosphate (1)
Thiamine-phosphate (1)
Xanthosine-5-phosphate (1)
Orotidine-5'-phosphate (1)
Octulose Bisphosphate (1)
Cyclic bis(3'->5') dimeric GMP (1)
Guanosine 5'-diphosphate-3'-diphosphate (1)
Trans,trans-farnesyl diphosphate (1)
Butyryl-CoA (1)
Adenosine 5'-phosphosulfate (1)

First Public Date

2023 (19)
2025 (16)
2014 (15)
2024 (12)
2026 (11)
2022 (9)
2017 (9)
2021 (8)
2019 (6)
2020 (5)
2018 (3)
2015 (2)
2013 (2)
2011 (2)
2016 (1)

Classification

protozoa (66)

Study type

Transcription profiling by array (30)
Unknown experiment type (6)
RNA-seq of coding RNA (3)
ChIP-chip by tiling array (2)
Comparative genomic hybridization by array (2)
Differential (1)
Cell line - One-color microarray (1)
RNA-seq of coding RNA from single cells (1)
RNA-seq of total RNA (1)
RNA-seq of non coding RNA (1)

Release Date

2020 (49)
2021 (42)
2023 (40)
2024 (39)
2019 (38)
2022 (36)
2025 (36)
2013 (30)
2017 (26)
2016 (25)
2011 (24)
2014 (23)
2018 (23)
2015 (19)
2005 (17)
2012 (16)
2010 (15)
2026 (10)
2008 (9)
2007 (7)
2009 (6)
1998 (5)
2006 (4)
2003 (3)
2000 (3)
2004 (2)
2002 (2)

Lab affiliation

State Key Laboratory of Veterinary Etiological Biology, Key Laboratory of Veterinary Parasitology of Gansu Province, Lanzhou Veterinary Research Institute, Chinese Academy of Agricultural Sciences, Lanzhou, Gansu Province 730046, PR China (6)
Department of Biochemistry and Molecular Biology, University of Georgia, Athens (GA), USA. (5)
EDyP (5)
Whitehead Institute for Biomedical Research and Massachusetts Institute of Technology (4)
Department of Biochemistry and Molecular Biology, University of Georgia, Athens (GA), USA (3)
Department of Biochemistry, University of Cambridge, UK (2)
Laboratoire de Spectrométrie de Masse BioOrganique (LSMBO), Université de Strasbourg, CNRS, IPHC UMR 7178, 67087 Strasbourg, France (2)
Associate Professor, Department of Biology, Massachusetts Institute of Technology and Whitehead Institute of Biomedical Research (2)
Universite de Montpellier LPHI UMR5235, France (2)
Associate Professor, Department of Biology, Massachusetts Institute of Technology and Whitehead Institute for Biomedical Research (2)
Department of Biochemistry, Center for Biomedical Mass Spectrometry, Boston University School of Medicine, Boston, MA 02118, USA (1)
Key Laboratory of Animal Infectious Diseases in Northeast China, Ministry of Education; Key Laboratory of Zoonosis, Shenyang Agricultural University, 120 Dongling Road, Shenyang 110166, China. (1)
College of Veterinary Medicine, Gansu Agricultural University (1)
Associate Professor, Whitehead Institute for Biomedical Research and Massachusettes Institute of Technology (1)
Professor and Deputy Director, Center for Systems Biology and Molecular Medicine, Yenepoya Research Centre, Yenepoya (Deemed to be University), Mangalore 575018, India (1)
Signalling in Apicomplexan Parasites Laboratory, The Francis Crick Institute, London NW1 1AT, UK (1)
University of Cambridge Department of Biochemistry Hopkins Building Downing Site Tennis Court Road Cambridge CB2 1QW (1)
Glasgow Centre for Parasitology, School of Infection and Immunity, University of Glasgow, Glasgow, UK (1)
CNRS UMR 7178 IPHC-DSA-LSMBO (1)
Associate Professor, Department of Biology, Massachusetts Institute of Technology and Whitehead Institute of Biomedical Research (lab head) (1)
Professor and Head, Department of Parasitology, Lanzhou Veterinary Research Institute, Chinese Academy of Agricultural Sciences, Lanzhou, Gansu Province 730046,The People's Republic of China (1)
Department of Biochemistry, Cinvestav-IPN. (1)
Univ. Bordeaux, CNRS, Microbiologie Fondamentale et Pathogénicité, UMR 5234, F-33000 Bordeaux, France (1)
Department of Infection Biology, School of Medicine, Zoonosis Research Center, Wonkwang University, Iksan, Republic of Korea (1)
Institute of Integrative Biology, University of Liverpool, Liverpool, UK. (1)
Associate Professor, Department of Biology, Massachusetts Institute of Technology Whitehead Institute of Biomedical Research (1)
Lanzhou Veterinary Research Institute, Chinese Academy of Agricultural Sciences (LVRI, CAAS) (1)
Department of Parasitology, School of Basic Medical Sciences, Wenzhou Medical University, Wenzhou (1)
Department of Internal Medicine Division of Infectious Diseases and International Medicine Morsani College of Medicine University of South Florida Tampa, FL (1)
University of Geneva, Department of Microbiology and Molecular Medicine (1)

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Transcriptional signatures of clonally derived Toxoplasma tachyzoites

PRJNA789894 | ENA

Toxoplasma gondii RH strain tachyzoites Transcriptome or Gene expression

PRJNA471259 | ENA

AP2XI-3-dependent gene regulation in Toxoplasma gondii tachyzoites (Complementary data)

PRJNA1301952 | ENA

AP2XI-3-dependent gene regulation in Toxoplasma gondii tachyzoites [RNA-seq]

PRJNA1203215 | ENA

Cross-lineage m5C methylome profiling reveals methylated divergence in Toxoplasma tachyzoites

PRJNA1250472 | ENA

AP2XII-2-dependent gene regulation in Toxoplasma gondii tachyzoites

PRJNA897929 | ENA

Proteomic identification of a Toxoplasma gondii sporozoite-specific antigen using HDAC3 inhibitor-treated tachyzoites as surrogate

The apicomplexan parasite Toxoplasma gondii has a complex life cycle involving multiple host species. Access to sexual stages and sporozoite-containing oocysts, essential for the parasite’s environmental transmission, is limited and requires animal experiments with cats. In vitro alternatives and re...

ORGANISM(S): Toxoplasma gondii Homo sapiens (Human)

2025-05-07 | PXD055279 | Pride

Thiouracil Pulse-chase, Tachyzoites and Bradyzoites mRNA stability data

Pulse chase measurements using thiouracil (DTU) labeling via UPRT and chasing with uracil Data from tachyzoites is labeled "DTU Pulse Chase". Two independent pulse chase experiments were performed in tachyzoites, pulse chase 1 and 2. Duplicate arrays at each timepoint were performed for pulse chase ...

ORGANISM(S): Toxoplasma gondii

2005-07-16 | GSE2947 | GEO

Thiouracil Pulse-chase, Tachyzoites and Bradyzoites mRNA stability data

ORGANISM(S): Toxoplasma gondii

2005-07-16 | E-GEOD-2947 | biostudies-arrayexpress

Toxoplasma gondii RH strain tachyzoites Transcriptome or Gene expression

Toxoplasma gondii is a globally distributed obligate intracellular parasite which can cause zoonotic toxoplasmosis with great harms. The average death time of mice that infected with Toxoplasma gondii RH strain tachyzoites recovered from the liquid nitrogen was shortened after multiple generations. ...

ORGANISM(S): Toxoplasma gondii RH

2021-05-14 | GSE114386 | GEO

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