Tan Michael M - OmicsDI

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Unknown (207)
Proteomics (53)
Metabolomics (51)
Genomics (38)
Transcriptomics (13)
Models (1)
Multiomics (1)

Organisms

Homo sapiens (45)
Mus musculus (9)
Caenorhabditis elegans (1)
Candida albicans (1)

Repository

GNPS (48)
MassIVE (48)
EGA (34)
biostudies-arrayexpress (17)
MetaboLights (3)
pride (3)
BioModels (1)
iProX (1)
PeptideAtlas (1)

Tissue

Others (1)
Bone (1)
Breast cancer cell (1)
Osteoblast (1)

Disease

Papillary renal cell carcinoma (1)
Osteogenesis imperfecta (1)
Proteus syndrome (1)

Technology Type

Mass Spectrometry (3)
Mass spectrometry (2)
Shotgun proteomics (2)
Illumina HiSeq 2000 (1)
NMR spectroscopy (1)
Data-independent acquisition (1)

Instrument Platform

LTQ Orbitrap Velos (46)
GC-MS (21)
GC MS (12)
LTQ Orbitrap (6)
Agilent 7890A GC with 5975C inert XL MSD (2)
LTQ Orbitrap Elite (2)
6110 Quadrupole LC/MS (1)
Agilent GC-MS (1)
LTQ Orbitrap Velos Pro (1)
Agilent GC/MSD 5975C (1)
Exactive (1)
LTQ Velos (1)
Q Exactive Plus (1)
TripleTOF 6600 (1)
Flow injection analysis MS - (1)
Liquid Chromatography MS - negative - reverse phase (1)
Liquid Chromatography MS - positive - reverse phase (1)
Nuclear Magnetic Resonance (NMR) - (1)
Q Exactive (1)
LTQ FT (1)

Publication Date

2016 (39)
2015 (20)
2017 (17)
2018 (11)
2019 (9)
2014 (5)
2024 (4)
2023 (4)
2022 (3)
2012 (2)
2010 (2)
2007 (2)
2013 (1)
2020 (1)

UNIPROT ID/AC

A0A024R563 (1)
A0A087WTX5 (1)
A0A087WYL9 (1)
A0A087X130 (1)
A0A087X1V9 (1)
A0A0A0MS07 (1)
A0A0A0MSA7 (1)
A0M8Q6 (1)
A0MZ66 (1)
A2NUT2 (1)
A5A3E0 (1)
A5YM69 (1)
A6ND36 (1)
A6NI28 (1)
A6NNZ2 (1)
A8MQ03 (1)
B4DPR2 (1)
B4E3A4 (1)
B7Z2G3 (1)
B7Z2U2 (1)
B7Z9B7 (1)
B7ZME8 (1)
B9A064 (1)
C9JM50 (1)
C9JSZ1 (1)
C9JZR2 (1)
D6RE86 (1)
E5RK69 (1)
E7ESL9 (1)
E7EVA0 (1)

ENSEMBL ID

ENSG00000170477 (1)

CHEBI ID

CHEBI:15354 (2)
CHEBI:15355 (2)
CHEBI:15428 (2)
CHEBI:15611 (2)
CHEBI:15741 (2)
CHEBI:15891 (2)
CHEBI:16359 (2)
CHEBI:16449 (2)
CHEBI:16704 (2)
CHEBI:16811 (2)
CHEBI:16919 (2)
CHEBI:17234 (2)
CHEBI:17268 (2)
CHEBI:17368 (2)
CHEBI:17568 (2)
CHEBI:17596 (2)
CHEBI:17750 (2)
CHEBI:18012 (2)
CHEBI:18132 (2)
CHEBI:18186 (2)
CHEBI:18237 (2)
CHEBI:22653 (2)
CHEBI:22660 (2)
CHEBI:24898 (2)
CHEBI:25017 (2)
CHEBI:25094 (2)
CHEBI:26271 (2)
CHEBI:26986 (2)
CHEBI:27266 (2)
CHEBI:27570 (2)

Metabolite Name

(R)-3-hydroxybutyrylcarnitine (1)
1-(1-enyl-palmitoyl)-2-arachidonoyl-GPC (P-16:0/20:4)* (1)
1-(1-enyl-palmitoyl)-2-arachidonoyl-GPE (P-16:0/20:4)* (1)
1-(1-enyl-palmitoyl)-2-linoleoyl-GPC (P-16:0/18:2)* (1)
1-(1-enyl-palmitoyl)-2-linoleoyl-GPE (P-16:0/18:2)* (1)
1-(1-enyl-palmitoyl)-2-palmitoleoyl-GPC (P-16:0/16:1)* (1)
1-(1-enyl-palmitoyl)-2-palmitoyl-GPC (P-16:0/16:0)* (1)
1-(1-enyl-palmitoyl)-GPE (P-16:0)* (1)
1-(1-enyl-stearoyl)-GPE (P-18:0)* (1)
1-arachidonoyl-GPI (20:4)* (1)
1-lignoceroyl-GPC (24:0) (1)
1-linoleoyl-GPE (18:2)* (1)
1-linoleoyl-GPI (18:2)* (1)
1-methyl-4-imidazoleacetate (1)
1-methylguanidine (1)
1-methylhistidine (1)
1-methylnicotinamide (1)
1-myristoyl-2-palmitoyl-GPC (14:0/16:0) (1)
1-oleoyl-2-docosahexaenoyl-GPC (18:1/22:6)* (1)
1-oleoyl-2-linoleoyl-GPE (18:1/18:2)* (1)
1-oleoyl-GPI (18:1) (1)
1-palmitoyl-2-arachidonoyl-GPE (16:0/20:4)* (1)
1-palmitoyl-2-arachidonoyl-GPI (16:0/20:4)* (1)
1-palmitoyl-2-docosahexaenoyl-GPC (16:0/22:6) (1)
1-palmitoyl-2-docosahexaenoyl-GPE (16:0/22:6)* (1)
1-palmitoyl-2-linoleoyl-GPE (16:0/18:2) (1)
1-palmitoyl-2-oleoyl-GPC (16:0/18:1) (1)
1-palmitoyl-2-oleoyl-GPI (16:0/18:1)* (1)
1-palmitoyl-2-palmitoleoyl-GPC (16:0/16:1)* (1)
1-palmitoyl-2-stearoyl-GPC (16:0/18:0) (1)

IsPrivate

False (1)

Submitter Keywords

Machine Learning Model (1)

Modelling Approach

Other (1)

Study type

Transcription profiling by array (7)
RNA-seq of coding RNA (5)
ChIP-seq (4)
Unknown experiment type (1)

Release Date

2024 (34)
2023 (31)
2022 (20)
2021 (20)
2025 (18)
2018 (17)
2017 (13)
2015 (11)
2016 (11)
2014 (10)
2020 (9)
2019 (8)
2012 (5)
2026 (5)
2013 (3)
2010 (3)
2008 (2)
2007 (1)
2011 (1)
2009 (1)
2003 (1)

Lab affiliation

Canada's Michael Smith Genome Sciences Centre, BC Cancer Agency, Vancouver V5Z 1L3, Canada. (1)
Department of Orthopaedics and Traumatology, The University of Hong Kong-Shenzhen Hospital, Shenzhen, China (1)
Monash Biomedicine Discovery Institute, Department of Microbiology, Monash University, Australia (1)

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Responses to P. aeruginosa infection - Shapira

Synchronized C. elegans cultures were prepared using standard techniques (http://cmgm.stanford.edu/~kimlab/index_methods.html). Live young adult worms were split between NG plates pre-seeded with the non-pathogenic E. coli strain OP50 or the Pseudomonas aeruginosa clinical isolate PA14 and incubated...

ORGANISM(S): Caenorhabditis elegans

2010-07-01 | E-GEOD-5584 | biostudies-arrayexpress

Acetylated histone H3K56 interacts with Oct4 to promote mouse embryonic stem cell pluripotency

The presence of acetylated histone H3K56 in human embryonic stem cells (ESCs) correlates positively with the binding of Nanog, Sox2 and Oct4 (NSO) transcription factors at their target gene promoters. However, the function of H3K56ac there has been unclear. We now report that Oct4 interacts with K56...

ORGANISM(S): Mus musculus

2013-06-25 | E-GEOD-47387 | biostudies-arrayexpress

The Devastating Rice Blast Airborne Pathogen Magnaporthe oryzae-A Review on Genes Studied with Mutant Analysis.

Not available

S-EPMC10055536 | biostudies-literature

Elucidating causative gene variants in hereditary Parkinson's disease in the Global Parkinson's Genetics Program (GP2).

Not available

S-EPMC10300084 | biostudies-literature

Structure of Main Protease from Human Coronavirus NL63: Insights for Wide Spectrum Anti-Coronavirus Drug Design.

Not available

S-EPMC4780191 | biostudies-literature

Understanding monogenic Parkinson's disease at a global scale.

Not available

S-EPMC10962747 | biostudies-literature

CK2 regulates transcriptional elongation

CK2 binds to actively transcribed regions in the genome and regulates transcriptional elongation. Identification of genome-wide binding sites of CK2?, and examination of the effect of Pol II binding upon CK2 inhibition in LNCaP cells

ORGANISM(S): Homo sapiens

2014-09-30 | E-GEOD-58607 | biostudies-arrayexpress

Prevalence of Gastric Intestinal Metaplasia in a Multiethnic US Veterans Population.

Not available

S-EPMC7890574 | biostudies-literature

High-throughput sequencing of Brf1 (Zfp36l1) and Brf2 (Zfp36l2) targets

We conducted RNA/RNA binding protein immunoprecipitation (RIP) followed by high throughput sequencing to identify mRNA targets of Brf1 (Zfp36l1) and Brf2 (Zfp36l2) in mouse embryonic stem cells. We collected over 190 million sequencing reads and identified many highly enriched protein coding mRNAs. ...

ORGANISM(S): Mus musculus

2014-04-30 | E-GEOD-40104 | biostudies-arrayexpress

Effects of selenomethionine on acute toxicities from concurrent chemoradiation for inoperable stage III non-small cell lung cancer.

Not available

S-EPMC4600190 | biostudies-literature

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363 Results

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