Tcga - OmicsDI

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Unknown (21036)
Genomics (1077)
Transcriptomics (651)
Proteomics (347)
Methylation profiling (79)
Other (38)
Genomic (11)
Multiomics (9)
Metabolomics (7)
Models (3)

Organisms

Homo sapiens (1007)
Mus musculus (98)
Bombyx mori (93)
Onchocerca volvulus (93)
Klebsiella pneumoniae (93)
Musca domestica (93)
Brugia malayi (93)
Schizosaccharomyces pombe (93)
Cnidaria (93)
Streptomyces coelicolor A3(2) (93)
Sus scrofa (93)
Human immunodeficiency virus 1 (93)
Oryza sativa Indica Group (93)
Sinorhizobium meliloti BL225C (93)
Vitis (93)
Sus scrofa domesticus (93)
Ostreococcus tauri (93)
Saccharomyces cerevisiae (93)
Synechocystis sp. PCC 6803 (93)
Olavius algarvensis Gamma 1 endosymbiont (93)
Vitis vinifera (93)
Rattus norvegicus (4)
synthetic construct (3)
Canis lupus familiaris (2)
Zea mays (1)
Expression vector lentiGuide-Puro (1)
Human endogenous retroviruses (1)
Tupaia belangeri chinensis (1)
Mus (1)
Paguma larvata (1)

Organisms

Homo sapiens (693)
Mus musculus (90)
Rattus norvegicus (4)
Canis lupus familiaris (2)
Tupaia belangeri chinensis (1)
Caenorhabditis elegans (1)
mouse metagenome (1)

Repository

ENA (944)
geo (706)
PeptideAtlas (174)
biostudies-arrayexpress (149)
pride (93)
MassIVE (48)
EGA (42)
iProX (27)
dbGaP (11)
jPOST (5)
MetaboLights (5)
BioModels (3)
GPMDB (3)
GNPS (2)
EVA (1)

Tissue

Digestive System (95)
Breast (72)
Cell culture (27)
Rectal cancer cell (21)
Colonic cancer cell (21)
Epithelial cell (11)
Female Reproductive System (5)
Brain (5)
Kidney (5)
Melanocyte (4)
Lung (3)
Ovary (2)
Macroglial cell (2)
Stomach (2)
Breast (2)
Extracellular vesicle (2)
Blood serum (2)
Cell suspension culture (2)
Fibroblast (2)
Permanent cell line cell (2)
Liver (2)
Colon (2)
Renal tubule (1)
Venous blood (1)
Gastric adenocarcinoma cell line (1)
Gastric epithelial cell (1)
Ovarian surface epithelial cell (1)
MCF-7 cell (1)
Glioblastoma cell (1)
HCT-116 cell (1)

Disease

Breast Carcinoma (36)
Rectum adenocarcinoma (21)
Colon adenocarcinoma (21)
Breast cancer (5)
Melanoma (4)
Serous Cystadenocarcinoma (3)
Not Available (3)
Glioblastoma (3)
Malignant neoplasm of ovary (3)
Uveal melanoma (2)
Stomach cancer (2)
Papillary renal cell carcinoma (2)
Head and neck squamous cell carcinoma (2)
Brain cancer (2)
Urinary bladder cancer (2)
Kidney cancer (2)
Disease free (2)
Kidney Clear Cell Carcinoma (1)
Pheochromocytoma (1)
Pancreatic carcinoma (1)
Lung squamous cell carcinoma (1)
Oral squamous cell carcinoma (1)
Diffuse gastric cancer (1)
Hepatocellular carcinoma (1)
Non-small cell lung carcinoma (1)
Brain glioblastoma multiforme (1)
Osteosarcoma (1)
Gastric adenocarcinoma (1)
Cervical cancer (1)
Wounds and Injuries (1)

Technology Type

Mass Spectrometry (93)
Shotgun proteomics (56)
Bottom-up proteomics (13)
Data-dependent acquisition (11)
Gel-based experiment (6)
Top-down proteomics (5)
SWATH MS (4)
Data-independent acquisition (4)
Affinity purification coupled with mass spectrometry proteomics (4)
Mass spectrometry (3)
Mass spectrometry assay (2)
Glycoproteomics (2)
Illumina HiSeq 2500, Illumina HiSeq 4000, ILLUMINA, NextSeq 500 (1)
Illumina HiSeq 2000 (1)
Illumina MiSeq (1)
MSE (1)
All-ion fragmentation (1)
DiaPASEF (1)

Instrument Platform

LTQ Orbitrap Velos (128)
Q Exactive (12)
Illumina NovaSeq 6000 (7)
Illumina HiSeq 2000 (7)
NextSeq 500 (7)
Illumina HiSeq 2500 (5)
Illumina Genome Analyzer IIx (3)
Instrument (3)
Orbitrap Fusion Lumos (3)
Illumina HiSeq (2)
Illumina Genome Analyzer II (2)
TimsTOF Pro (2)
Q Exactive Plus (2)
Liquid Chromatography MS - positive - hilic (2)
GeneChip® Scanner 3000 7G (Affymetrix) (1)
454 GS 20 (1)
Hiseq2500 (1)
Illumina HiSeq 4000 (1)
Illumina (1)
GC/MS Agilent MSD5977B (1)
MaXis (1)
LTQ Orbitrap Elite (1)
LTQ (1)
Orbitrap Fusion (1)
Q Exactive HF (1)
LTQ Orbitrap (1)
Q Exactive HF-X (1)
Liquid Chromatography MS - alternating (1)
Liquid Chromatography MS - positive - reverse-phase (1)
Liquid Chromatography MS - negative - reverse-phase (1)

Publication Date

2015 (163)
2014 (131)
2026 (121)
2024 (106)
2025 (103)
2022 (96)
2023 (73)
2016 (70)
2021 (69)
2019 (61)
2020 (54)
2017 (45)
2018 (40)
2013 (14)
2012 (13)
2011 (9)
2009 (4)
2010 (2)
2008 (1)

UNIPROT ID/AC

Q9NZN4 (174)
Q9NPP6 (174)
Q96K68 (174)
Q96DK0 (174)
Q8WY24 (174)
Q8NCL6 (174)
Q7Z374 (174)
Q6ZW64 (174)
Q6ZVX0 (174)
Q6P089 (174)
Q6N092 (174)
Q6N090 (174)
Q6MZX9 (174)
Q6MZW0 (174)
Q6MZV6 (174)
Q16363 (174)
Q01995 (174)
P51884 (174)
Q8TCJ2 (174)
Q6FG99 (174)
Q15417 (174)
P62942 (174)
P16144-3 (174)
P16144 (174)
P36955 (174)
P21810 (174)
P19823 (174)
P13611 (174)
Q9Y2T7 (174)
Q99733-2 (174)

ENSEMBL ID

ENSG00000170477 (173)
ENSG00000229353 (126)
ENSG00000147251 (95)
ENSG00000204131 (78)
ENSG00000247315 (48)
ENSG00000176092 (35)

CHEBI ID

CHEBI:36559 (1)
CHEBI:32544 (1)
CHEBI:16675 (1)
CHEBI:15763 (1)
CHEBI:17154 (1)
CHEBI:15927 (1)
CHEBI:16171 (1)
CHEBI:17380 (1)
CHEBI:18304 (1)
CHEBI:16960 (1)
CHEBI:30249 (1)
CHEBI:16828 (1)
CHEBI:16467 (1)
CHEBI:16300 (1)
CHEBI:16946 (1)
CHEBI:18361 (1)
CHEBI:18050 (1)
CHEBI:15379 (1)
CHEBI:17111 (1)
CHEBI:18367 (1)
CHEBI:18009 (1)
CHEBI:15422 (1)
CHEBI:16474 (1)
CHEBI:15846 (1)
CHEBI:16134 (1)
CHEBI:177076 (1)
CHEBI:177075 (1)
CHEBI:155825 (1)
CHEBI:83505 (1)
CHEBI:81945 (1)

Metabolite Name

Leucine (3)
Adenosine (3)
Proline (3)
Maltotriose (3)
Linoleic acid (3)
L-Tryptophan (3)
Glutamine (3)
Chelidonine (2)
Prometon (2)
Adenosine 5'-diphosphate (2)
Valsartan (2)
Fluoxetine (2)
Ciprofloxacin (2)
Thiamine monophosphate (2)
Beta-Nicotinamide adenine dinucleotide (2)
Pirimicarb (2)
1-Methylnicotinamide (2)
Crotamiton (2)
Acamprosate (2)
Histidine (2)
Allopurinol (2)
Indoleacetic acid (2)
Phloretin (2)
Trigonelline (2)
Uracil (2)
Thiamine (2)
Propranolol (2)
O-Phosphoethanolamine (2)
Niacinamide (2)
Atraton (2)

First Public Date

2026 (141)
2025 (116)
2024 (109)
2022 (95)
2023 (88)
2021 (74)
2019 (67)
2017 (57)
2020 (53)
2018 (43)
2015 (38)
2016 (27)
2014 (23)
2013 (13)

Modelling Approach

Mathematical model (1)
Boolean model (1)

Lab affiliation

Vanderbilt University (21)
changzhi medical college (3)
Institute for Research in Immunology and Cancer, Department of Biochemistry, Department of Chemistry, Université de Montréal, Québec, Canada H3T 1J4 (2)
Institute of Molecular Systems Biology, D-BIOL, ETH Zurich, Switzerland (1)
Research Center of IPO Porto (CI-IPOP)/CI-IPOP@RISE (Health Research Network), Portuguese Oncology Institute of Porto (IPO Porto)/Porto Comprehensive Cancer Center Raquel Seruca (Porto.CCC) (1)
Department of Laboratory Medicine, Institute of Biomedicine, University of Gothenburg, and 2Department of Clinical Chemistry, Sahlgrenska University Hospital, Gothenburg, Sweden (1)
Department of Internal Medicine, Virginia Commonwealth University (VCU), Richmond, VA, USA (1)
Zhejiang University,China (1)
Manager Biological Mass Spectrometry Core Dalhousie University (1)
Department of Orthopaedics, General Hospital of Ningxia Medical University, Yinchuan, Ningxia, China (1)
Associate Professor, Department of biotechnology and research, Sir Ganga ram hospital, New Delhi -110060, Delhi, India (1)
PRISM laboratory Inserm U1192, France, Lille University (1)
Department of Biochemistry Department of Oncology Robarts Research Institute Schulich School of Medicine & Dentistry Western University (1)
Brain tumor translational targets German Cancer Research Center (DKFZ) Im Neuenheimer Feld 580 69120 Heidelberg Germany (1)
Core facility for mass spectrometry and proteomics, ZMBH, University Heidelberg, IM Neuenheimer Feld 282, 69120 Heidelberg, Germany (1)
Department of Obstetrics and Gynecology, Shanghai Jiao Tong University Affiliated Sixth People’s Hospital, Shanghai Jiao Tong University School of medicine (1)
Centre for Haemato-Oncology, Barts Cancer Institute, Queen Mary University of London (1)
Professor School of Biomolecular and Biomedical Science, University College Dublin, School of Biomolecular and Biomedical Science, Conway Institute Belfield Dublin 4 (1)
University of Vienna, Faculty of Chemistry, Joint Metabolome Facility, Department of Analytical Chemistry (1)
State Key Laboratory of Microbial Metabolism, Joint International Research Laboratory of Metabolic & Developmental Sciences, School of Life Sciences and Biotechnology, Shanghai Jiao Tong University, Shanghai, 200240, China (1)
Mass Spectrometry Facility Max Planck Institute for Molecular Genetics (1)
Proteomics Lab, Dept. of Biosciences and Bioengineering, IIT Bombay, INDIA, 400076 (1)
University of Siena (1)
Research Center of IPO-Porto (CI-IPOP)/ RISE@CI-IPOP (Health Research Network), Portuguese Oncology Institute of Porto (IPO-Porto) / Porto Comprehensive Cancer Center Raquel Seruca (Porto.CCC Raquel Seruca) / GlycoMatters Biotech (1)
Department of Medical Biotechnology and Laboratory Science College of Medicine, Chang Gung University, Taoyuan, Taiwan (1)
CMMB, University of South Florida (1)
Max Planck Institute for Biochemistry Department of Proteomics and Signaltransduction Am Klopferspitz 18 D-82152 Martinsried (1)
Department of Molecular Medicine, Max Planck Institute of Biochemistry, Martinsried, Germany (1)
Cheeloo College of Medicine, Shandong University, Jinan 250002, PR.China. Department of Hepatobiliary Surgery, The First Affiliated Hospital of USTC, Division of Life Sciences and Medicine, University of Science and Technology of China, Hefei 230001, China. Anhui Province Key Laboratory of Hepatopancreatobiliary Surgery, Hefei 230001, China. Anhui Provincial Clinical Research Center for Hepatobiliary Diseases, Hefei 230001, China. (1)
Cheeloo College of Medicine, Shandong University, Jinan 250002, PR.China. Department of Hepatobiliary Surgery, The First Affiliated Hospital of USTC, Division of Life Sciences and Medicine, University of Science and Technology of China, Hefei 230001, China. Anhui Province Key Laboratory of Hepatopancreatobiliary Surgery, Hefei 230001, China. Anhui Provincial Clinical Research Center for Hepatobiliary Diseases, Hefei 230001, China. (1)

IsPrivate

False (3)

Modification

2x(15)N labeled L-lysine (1)
4x(15)N labeled L-arginine (1)

Study type

Transcription profiling by array (52)
RNA-seq of coding RNA (25)
Methylation profiling by array (22)
Comparative genomic hybridization by array (13)
Genotyping by array (10)
RNA-seq of non coding RNA (4)
Transcription profiling by RT-PCR (3)
MicroRNA profiling by high throughput sequencing (3)
ChIP-seq (3)
DNA-seq (2)
Methylation profiling by high throughput sequencing (2)
RNA-seq of non coding RNA from single cells (1)
MicroRNA profiling by high-throughput sequencing (1)
Translation profiling (1)
High-throughput sequencing (1)
Human - One-color microarray (1)
Cell line - High-throughput sequencing (1)
ChIP-chip by array (1)
Other (1)
MicroRNA profiling by array (1)
RNA-seq of coding RNA from single cells (1)

Release Date

2022 (4186)
2021 (3344)
2023 (2894)
2025 (2612)
2024 (2309)
2020 (2115)
2019 (1257)
2018 (718)
2017 (550)
2016 (419)
2015 (262)
2026 (233)
2014 (151)
2013 (72)
2012 (36)
2011 (14)
2009 (6)
2010 (2)
2008 (1)
2004 (1)

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TCGA - The Cancer Genome Atlas

PRJNA74949 | ENA

The Cancer Genome Atlas (TCGA)

The Cancer Genome Atlas (TCGA) is a comprehensive and coordinated effort to accelerate our understanding of the molecular basis of cancer through the application of genome analysis technologies, including large-scale genome sequencing. TCGA is a joint effort of the National Cancer Institute (NCI)...

phs000178 | dbGaP

An Integrated TCGA Pan-Cancer Clinical Data Resource to Drive High-Quality Survival Outcome Analytics.

Not available

S-EPMC6066282 | biostudies-literature

Gastric adenocarcinoma whole genome sequencing data - TCGA-STAD sample

Gastric adenocarcinoma WGS - TCGA-STAD sample

PRJEB121353 | ENA

TCGA WGS Variants Across 18 Cancer Types

PRJNA912837 | ENA

TCGA WGS Variants Across 18 Cancer Types

PRJNA912838 | ENA

Transcriptomal Diversity of Long-Term Glioblastoma Survivors

Glioblastoma (GBM) is a highly aggressive type of glioma with poor prognosis. However, a small number of patients live much longer than the median survival. A better understanding of these long-term survivors (LTS) may provide important insight into the biology of GBM. We identified 7 patients with ...

ORGANISM(S): Homo sapiens

2014-05-02 | E-GEOD-54077 | biostudies-arrayexpress

caArray_laird-00224: TCGA Ovarian: Analysis of DNA Methylation for Ovarian Using Illumina Infinium Human DNA Methylation 27 platform (HumanMethylation27) (USC)

TCGA Analysis of DNA Methylation Using Illumina Infinium Human DNA Methylation 27 platform laird-00224 Assay Type: Methylation Provider: Illumina Array Designs: jhu-usc.edu_OV.HumanMethylation27.1.adf, jhu-usc.edu_OV.HumanMethylation27.v2 Organism: Homo sapiens (ncbitax) Tissue Sites: Ovary, Ovary, ...

ORGANISM(S): Homo sapiens

2015-11-21 | E-GEOD-75268 | biostudies-arrayexpress

Homo sapiens

TCGA - CCLE Collaboration

PRJNA169425 | ENA

Blood somatic mutations in TCGA donors suffering from solid tumors

PRJNA823800 | ENA

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23249 Results

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