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Unknown
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Transcriptomics
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Organisms
Homo sapiens
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human gut metagenome
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Oncorhynchus mykiss
(20)
mouse gut metagenome
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Canis lupus familiaris
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Salmo salar
(19)
Bifidobacterium breve UCC2003
(17)
Pimephales promelas
(16)
Ovis aries
(16)
Mycobacterium tuberculosis
(15)
Repository
biostudies-arrayexpress
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ENA
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pride
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geo
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Tissue
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(1)
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(138)
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(83)
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(46)
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(38)
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(34)
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(27)
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(22)
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(20)
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(18)
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(18)
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(9)
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(9)
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(7)
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(3)
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(3)
Reference
(3)
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(2)
Not applicable
(2)
Hypertension
(2)
Apparently healthy
(2)
Squamous Cell Carcinoma
(2)
Primary tumor
(2)
Transplant rejection
(1)
Andersen-Tawil syndrome
(1)
Cartilage disease
(1)
Cholesterol ester storage disease
(1)
Coronary artery disease
(1)
Complement deficiency
(1)
Neurodegenerative disease
(1)
Technology Type
Illumina HiSeq 2000
(12)
ILLUMINA, Illumina HiSeq 2500
(4)
Illumina HiSeq 2500
(4)
Illumina HiSeq 2000, ILLUMINA
(4)
ILLUMINA, Illumina HiSeq 2000
(3)
Illumina MiSeq
(3)
ILLUMINA, NextSeq 500
(2)
Illumina HiSeq 2500, ILLUMINA
(2)
Unknown
(2)
HiSeq X Ten (ILLUMINA)
(1)
NextSeq 500, ILLUMINA
(1)
Codelink Human Whole Genome Bioarray
(1)
ILLUMINA, NextSeq 500, HiSeq X Ten
(1)
OXFORD_NANOPORE, MinION
(1)
NextSeq 500, Illumina HiSeq 2500, ILLUMINA
(1)
PacBio RS II, PACBIO_SMRT
(1)
Infinium Omni2.5M
(1)
Illumina Genome Analyzer II, ILLUMINA
(1)
ABI_SOLID, Illumina HiSeq 2000, Illumina 450K, AB 5500xl Genetic Analyzer, AB 5500 Genetic Analyzer, ILLUMINA
(1)
ILLUMINA, Illumina HiSeq 4000, Illumina HiSeq 2500
(1)
Illumina MiSeq, ILLUMINA
(1)
Illumina Exome 250K
(1)
Illumina HiSeq 4000, ILLUMINA
(1)
Illumina 450K
(1)
Illumina HiSeq 4000, Illumina HiSeq 2500, ILLUMINA
(1)
Illumina Omni 2.5, Illiumina Omni 2.5
(1)
HiSeq X Ten, ILLUMINA
(1)
Agilent 180K, Affymetrix GeneChip Human Exon 1.0 ST, Liquid chromatography–mass spectrometry, Illumina 1M SNP Array, Agilent SurePrint Human miRNA Microarray, Illumina HiSeq 2000, Agilent 244K, Agilent 44K, Illumina Genome Analyzer II
(1)
HiSeq X Ten
(1)
Illumina Genome Analyzer IIx, Illumina Genome Analyzer II
(1)
Instrument Platform
Illumina NovaSeq 6000
(296)
NextSeq 500
(120)
Illumina HiSeq 2500
(101)
Illumina HiSeq 4000
(96)
Illumina HiSeq 2000
(89)
Scanning hardware
(37)
Illumina NovaSeq X
(29)
NextSeq 2000
(29)
Illumina MiSeq
(29)
NextSeq 550
(27)
NA
(16)
GenePix 4000B [Axon Instruments]
(13)
Other
(10)
Axon- GenePix4000B
(10)
G2565BA DNA microarray scanner [Agilent]
(10)
DNBSEQ-G400
(10)
HiSeq X Ten
(10)
Variable Atmosphere Incubator
(9)
Agilent 2100 Bioanalyzer
(8)
ScanArray 4000 [PerkinElmer]
(8)
G2565AA DNA microarray scanner [Agilent]
(8)
Illumina Genome Analyzer IIx
(8)
ScanArray Express HT
(8)
Illumina Genome Analyzer II
(8)
Illumina HiSeq 3000
(8)
Dell PowerEdge R750; CPU: 2 × Intel Xeon Gold 6346 (32 Cores / 64 Threads); RAM: 188 GB
(7)
Spectronic Helios Alpha UV-Vis spectrophotometer
(7)
Bioanalyser
(7)
Illumina HiSeq 1500
(7)
NucleoSpin RNA/Protein kit lysis buffer (350 µL per tube; Macherey‑Nagel).
(6)
Publication Date
2010
(2427)
2015
(2267)
2013
(2237)
2025
(1974)
2014
(1954)
2011
(1926)
2012
(1887)
2026
(1667)
2024
(1491)
2022
(1436)
2023
(1362)
2021
(1245)
2016
(1142)
2020
(1023)
2008
(875)
2009
(782)
2019
(704)
2018
(650)
2017
(530)
2007
(485)
2006
(260)
2005
(231)
2004
(90)
2003
(25)
2002
(7)
2027
(3)
2001
(2)
UNIPROT ID/AC
P00742
(6)
P00734
(6)
Q9EQ21
(5)
Q921I1
(5)
P10646
(5)
P08709
(5)
P13726
(5)
Q93WK5
(4)
Q8L500
(4)
Q9LKL2
(4)
P04637
(4)
P01008
(3)
P12259
(3)
Q00987
(3)
O81713
(3)
Q13315
(3)
P00451
(2)
P00740
(2)
P27361
(2)
P01270
(2)
P29353
(2)
P62988
(2)
P05067
(2)
P60484
(2)
Q02750
(2)
P61864
(1)
P53130
(1)
A6ZP55
(1)
P14681
(1)
Q8WUJ0
(1)
ENSEMBL ID
ENSG00000170477
(4)
ENSG00000141510
(2)
ENSG00000135679
(2)
ENSG00000100234
(1)
ENSG00000102265
(1)
ENSG00000184557
(1)
ENSG00000137745
(1)
ENSG00000196611
(1)
ENSG00000177606
(1)
ENSG00000170345
(1)
ENSG00000158859
(1)
ENSG00000149968
(1)
ENSG00000147889
(1)
ENSRNOP00000009359
(1)
ENSG00000229353
(1)
CHEBI ID
CHEBI:16027
(148)
CHEBI:16761
(88)
CHEBI:16113
(77)
CHEBI:15422
(64)
CHEBI:33699
(7)
CHEBI:29034
(6)
CHEBI:24875
(5)
CHEBI:35222
(5)
CHEBI:16991
(4)
CHEBI:61448
(3)
CHEBI:4167
(3)
CHEBI:15361
(3)
CHEBI:48705
(2)
CHEBI:6801
(2)
CHEBI:26523
(2)
CHEBI:36080
(2)
CHEBI:16908
(2)
CHEBI:17835
(2)
CHEBI:17794
(2)
CHEBI:16001
(2)
CHEBI:17665
(2)
CHEBI:29108
(2)
CHEBI:16108
(2)
CHEBI:17138
(2)
CHEBI:18021
(2)
CHEBI:50509
(1)
CHEBI:31696
(1)
CHEBI:91005
(1)
CHEBI:64477
(1)
CHEBI:61995
(1)
Metabolite Name
Hypoxanthine
(220)
Creatine
(199)
Uridine
(195)
Inosine
(193)
Uracil
(189)
Taurine
(186)
Adenine
(186)
Adenosine
(184)
Creatinine
(178)
Choline
(169)
L-Tyrosine
(169)
L-Phenylalanine
(168)
Xanthine
(166)
Guanosine
(166)
L-Histidine
(152)
Cytidine
(152)
Guanine
(151)
Cytosine
(150)
L-Tryptophan
(147)
Betaine
(145)
L-Glutamine
(145)
Citric acid
(142)
Ornithine
(141)
Riboflavin
(133)
Thymine
(131)
Indole
(128)
L-Valine
(128)
L-Proline
(126)
Pantothenic acid
(125)
Citrulline
(124)
First Public Date
2014
(2025)
2024
(1389)
2025
(1262)
2026
(1085)
2023
(1079)
2022
(1061)
2021
(919)
2020
(864)
2019
(741)
2017
(629)
2018
(551)
2015
(463)
2016
(378)
2013
(299)
2010
(11)
2012
(9)
2011
(5)
Modelling Approach
Ordinary differential equation model
(85)
Computational model
(7)
Constraint-based model
(7)
Machine learning
(5)
Pharmacodynamics model
(2)
Other
(2)
Population model
(2)
Random forest procedure
(1)
Deep learning
(1)
Mathematical model
(1)
Steady-state model
(1)
Generalized logical model
(1)
Boolean model
(1)
Delayed differential equation model
(1)
Differential equation model
(1)
Study status
Completed
(397)
Recruiting
(229)
Not yet recruiting
(121)
Not provided
(76)
Active, not recruiting
(60)
Terminated
(42)
Withdrawn
(13)
Enrolling by invitation
(8)
Ongoing
(7)
Suspended
(1)
Lab affiliation
Department of Cancer Biology, Dana-Farber Cancer Institute, Boston, MA 02215, USA., Department of Biological Chemistry and Molecular Pharmacology, Harvard Medical School, Boston, MA 02115, USA
(46)
University of Victoria
(41)
Proteomics Core Facility and Research Group Proteomics, CEITEC-MU, Masaryk University, Brno, Czech Republic
(40)
Department of Biochemistry, Albert Einstein College of Medicine, Bronx, NY 10461, United States
(26)
Head of the Curie Institute Mass Spectrometry Platform
(20)
Instituto de Investigaciones Sanitarias de Santiago de Compostela
(19)
CRUK - Beatson Institute for Cancer Research - Switchback Rd, Bearsden, Glasgow G61 1BD - United Kingdom
(15)
OncoProteomics Laboratory, Dept of Medical Oncology, VU University Medical Center, Amsterdam, The Netherlands
(13)
Department of Biochemistry and Functional Proteomics, Institute of Biology II, Faculty of Biology and BIOSS Centre for Biological Signalling Studies, University of Freiburg, 79104 Freiburg im Breisgau, Germany
(13)
Chair of Biochemistry II, Theodor Boveri-Institute, Biocenter, University of Würzburg, Würzburg, Germany
(13)
Analytics Core Facility Essen (ACE), Chemische Biologie, Universität Duisburg-Essen, ZMB, Germany
(12)
Department of Glycobiology, Institute of Chemistry, Slovak Academy of Sciences
(11)
Amsterdam UMC, Vrije Universiteit Amsterdam, Medical Oncology, Cancer Center Amsterdam, OncoProteomics Laboratory, Amsterdam, Netherlands
(11)
Ruhr University Bochum, Germany
(10)
Max-Planck-Institute for Biology of Ageing Department of Mitochondrial Proteostasis Joseph-Stelzmann-Str. 9b 50931 Cologne
(9)
Staff Scientist Biological Systems & Engineering Division Lawrence Berkeley National Laboratory Berkeley CA 94720
(9)
Department of Ecology & Evolutionary Biology, University of California, Los Angeles, CA
(8)
Center for Structural Biology, Center for Cancer Research, National Cancer Institute (NCI), National Institutes of Health, Frederick, MD 21702-1201, USA
(7)
CRUK Scotland Institute for Cancer Research - Switchback Rd, Bearsden, Glasgow G61 1BD - United Kingdom
(7)
Ghent University, Department of Plant Biotechnology and Bioinformatics, Technologiepark 71, 9052 Ghent, Belgium VIB Center for Plant Systems Biology, Technologiepark 71, 9052 Ghent, Belgium
(7)
CRUK Beatson Institute, Switchback Road, Glasgow G61 1BD, UK.
(7)
University of Edinburgh
(7)
Department of Leukemia, Division of Cancer Medicine, The University of Texas MD Anderson Cancer Center, Houston, TX
(7)
Whitehead Institute for Biomedical Research and Massachusetts Institute of Technology
(6)
Laboratório de Biotecnologia, Centro de Biociências e Biotecnologia (CBB), Universidade Estadual do Norte Fluminense Darcy Ribeiro (UENF), Av. Alberto Lamego, Campos dos Goytacazes, RJ, Brazil. Unidade de Biologia Integrativa, Setor de Genômica e Proteômica, UENF, Campos dos Goytacazes, RJ, Brazil.
(6)
University of Florida
(6)
Mendel University in Brno
(6)
Mass Spectrometry/Proteomics Facility, Netherlands Cancer Institute, Amsterdam, Netherlands.
(6)
Carnegie Mass Spectrometry Facility
(6)
Moffitt Cancer Center Tampa, FL, USA
(6)
Tags
pathogen
(471)
pathogen:bacterium
(372)
pathogen:fungus
(36)
pathogen:virus
(35)
covid19
(26)
pathogen:protozoan
(25)
wastewater
(5)
pathogen:helminth
(3)
Keyword
Colonoscopy
(40)
Screening
(34)
Colorectal cancer screening
(18)
Oxaliplatin
(18)
Fluorouracil
(16)
Colorectal
(15)
Irinotecan
(15)
Bevacizumab
(14)
Cetuximab
(14)
Capecitabine
(13)
Fecal immunochemical test
(11)
Leucovorin
(11)
Neoplasm
(10)
Colorectal Cancer Screening
(10)
Immunotherapy
(10)
Intestinal Neoplasms
(9)
CRC
(9)
Colon
(9)
Cancer screening
(9)
Colorectal Neoplasm
(8)
Neoplasms by Site
(8)
Gastrointestinal Neoplasms
(8)
Digestive System Neoplasms
(8)
Metastatic
(8)
Chemotherapy
(8)
FIT
(7)
Rectal Diseases
(7)
Rectal cancer
(7)
Levoleucovorin
(7)
Fecal occult blood test
(6)
IsPrivate
False
(125)
Model Flag
Non Kinetic
(4)
Submitter Keywords
Machine Learning Model
(14)
Ersilia
(9)
FAIR-AIML
(9)
FROG
(6)
Immuno-oncology
(4)
TransQST
(1)
COVID-19
(1)
Classification
bacteria
(372)
fungi
(36)
viruses
(35)
protozoa
(25)
helminths
(3)
Modification
2x(15)N labeled L-lysine
(15)
4x(15)N labeled L-arginine
(15)
N6
(9)
15.994915
(5)
Not available
(5)
N6-dimethyl-L-lysine
(4)
57.021464
(4)
4-tetrahydrothiazine-3-carboxylic acid
(4)
4
(3)
4x(2)H labeled dimethylated residue
(2)
42.010565
(2)
6x(2)H labeled dimethylated L-arginine
(2)
+3amu)
(2)
227.126991
(1)
9.030194
(1)
4-dinitrophenyl modified residue
(1)
6-dioxaoctanediamine derivatized cysteine
(1)
-18.010565
(1)
-17.026549
(1)
4x(2)H labeled dimethylated L-lysine
(1)
Study type
Transcription profiling by array
(10764)
RNA-seq of coding RNA
(1479)
Comparative genomic hybridization by array
(723)
Unknown experiment type
(349)
ChIP-chip by tiling array
(317)
ChIP-seq
(279)
Methylation profiling by array
(260)
RNA-seq of non coding RNA
(223)
Other
(214)
Transcription profiling by RT-PCR
(115)
RNA-seq of coding RNA from single cells
(112)
Transcription profiling by tiling array
(80)
Proteomic profiling by array
(68)
Methylation profiling by high throughput sequencing
(66)
ChIP-chip by array
(60)
Genotyping by array
(46)
Transcription profiling by SAGE
(43)
RNA-seq of total RNA
(43)
DNA-seq
(42)
MicroRNA profiling by array
(40)
Animal - High-throughput sequencing
(21)
RNAi profiling by array
(18)
Cell line - High-throughput sequencing
(16)
ATAC-seq
(16)
Animal - One-color microarray
(13)
Cell line - One-color microarray
(12)
Human - One-color microarray
(9)
High-throughput sequencing
(8)
MicroRNA profiling by high throughput sequencing
(8)
Single nucleus RNA sequencing
(8)
Release Date
2022
(28662)
2023
(24990)
2021
(24240)
2025
(22598)
2024
(20905)
2020
(18637)
2019
(14148)
2018
(12388)
2017
(9642)
2015
(8689)
2016
(8656)
2014
(7506)
2013
(5872)
2012
(4828)
2010
(4359)
2011
(4278)
2026
(2876)
2009
(2293)
2008
(2030)
2007
(1244)
2006
(841)
2005
(641)
2004
(373)
2003
(250)
2002
(165)
2001
(165)
2000
(129)
1999
(112)
1998
(77)
1997
(16)
Location
United States
(256)
China
(174)
United Kingdom
(78)
Australia
(71)
Italy
(47)
France
(41)
Spain
(36)
Netherlands
(36)
Japan
(32)
Canada
(30)
Germany
(26)
India
(25)
Denmark
(22)
South Korea
(18)
Belgium
(17)
Iran
(14)
New Zealand
(14)
Taiwan
(11)
Sweden
(9)
Israel
(9)
Czechia
(8)
Hong Kong
(7)
Norway
(6)
Singapore
(6)
Poland
(6)
Austria
(6)
Switzerland
(6)
Turkey
(5)
Brazil
(5)
Finland
(4)
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test test
test test testtest test testtest test test test testtest test test
ORGANISM(S):
Caenorhabditis Remanei (ncbitaxon:31234)
Test
2020-11-02
|
MSV000086398
|
MassIVE
Cite
CHEAR Pooled Plasma Reference Material Proficiency Test
Not available
ORGANISM(S):
Homo sapiens
ST000531
|
MetabolomicsWorkbench
Cite
CHEAR Plasma Reference Material Proficiency Test Biocrates
Not available
ORGANISM(S):
Homo sapiens
ST000545
|
MetabolomicsWorkbench
Cite
CHEAR Urine Reference Material Proficiency Test Biocrates
Not available
ORGANISM(S):
Homo sapiens
ST000544
|
MetabolomicsWorkbench
Cite
Pilot Human Muscle oral glucose tolerance test (OGTT)
Not available
ORGANISM(S):
Homo sapiens
ST000836
|
MetabolomicsWorkbench
Cite
CHEAR Urine Reference Material Proficiency Test NMR (Part II)
Not available
ORGANISM(S):
Homo sapiens
ST000538
|
MetabolomicsWorkbench
Cite
CHEAR Urine Reference Material Proficiency Test NMR (Part I)
Not available
ORGANISM(S):
Homo sapiens
ST000535
|
MetabolomicsWorkbench
Cite
CHEAR Plasma Extraction Reference Material Proficiency Test NMR (Part II)
Not available
ORGANISM(S):
Homo sapiens
ST000537
|
MetabolomicsWorkbench
Cite
CHEAR Plasma Dilution Reference Material Proficiency Test NMR (Part II)
Not available
ORGANISM(S):
Homo sapiens
ST000536
|
MetabolomicsWorkbench
Cite
CHEAR Plasma Extraction Reference Material Proficiency Test NMR (Part I)
Not available
ORGANISM(S):
Homo sapiens
ST000534
|
MetabolomicsWorkbench
Cite
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