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TranscriptomicsRepertoire of miRNAs in epithelial ovarian cancer determined by next generation sequencing of small RNA cDNA libraries
Background: MicroRNAs (miRNAs) are small regulatory RNAs that are implicated in cancer pathogenesis and have recently shown promise as blood-based biomarkers for cancer detection. Epithelial ovarian cancer is a deadly disease for which improved outcomes could be achieved by successful early detectio...
ORGANISM(S): Homo sapiens 
2009-03-12 | E-GEOD-15190 | biostudies-arrayexpress
GenomicsFusionSeq: a modular framework for finding gene fusions by analyzing Paired-End RNA-Sequencing data

We have developed FusionSeq to identify fusion transcripts from paired-end RNA-sequencing. FusionSeq includes filters to remove spurious candidate fusions with artifacts such as misalignments or random pairing of transcript fragments and it ranks candidates according to several statistics. It a...

phs000311.v1.p1 | EGA
UnknownType III TGF-β receptor promotes FGF2-mediated neuronal differentiation in neuroblastoma.
Not available
S-EPMC3809791 | biostudies-literature
GenomicsEpigenomic alterations in localized and advanced prostate cancer
Here we used Illumina NGS for high-throughput profiling of the DNA methylome in seven human benign prostate tissues, seven human primary prostate cancer and six human castration resistant prostate cancer patient samples. These data were used to profile the CpG cytosine methylation pattern at single ...
ORGANISM(S): Homo sapiens 
2013-07-03 | E-GEOD-41701 | biostudies-arrayexpress
UnknownMast Cells Promote Nitrogen Mustard-Mediated Toxicity in the Lung Associated With Proinflammatory Cytokine and Bioactive Lipid Mediator Production.
Not available
S-EPMC8557475 | biostudies-literature
GenomicsHistone Modifications by ChIP-seq from ENCODE/University of Washington
This data was generated by ENCODE. If you have questions about the data, contact the submitting laboratory directly (Richard Sandstrom mailto:sull@u.washington.edu). If you have questions about the Genome Browser track associated with this data, contact ENCODE (mailto:genome@soe.ucsc.edu). This tra...
ORGANISM(S): Homo sapiens 
2012-06-07 | E-GEOD-35583 | biostudies-arrayexpress
UnknownProfiling the quantitative occupancy of myriad transcription factors across conditions by modeling chromatin accessibility data.
Not available
S-EPMC9248881 | biostudies-literature
UnknownEpigenomic alterations in localized and advanced prostate cancer.
Not available
S-EPMC3612910 | biostudies-literature
UnknownRepertoire of microRNAs in epithelial ovarian cancer as determined by next generation sequencing of small RNA cDNA libraries.
Not available
S-EPMC2668797 | biostudies-literature
UnknownEvidence for molecular differences in prostate cancer between African American and Caucasian men.
Not available
S-EPMC4167562 | biostudies-literature
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