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Transcriptomics[E-MTAB-502] Citrobacter rodentium transcriptomics (Regulation)
Whole genome trancription study of Citrobacter rodentium grown in rich media. Publication Title: Citrobacter rodentium is an Unstable Pathogen Showing Evidence of Significant Genomic Flux Publication Author List: Nicola K. Petty, Theresa Feltwell, Derek Pickard, Simon Clare, Ana L. Toribio, Maria Fo...
ORGANISM(S): Citrobacter rodentium 
2011-07-14 | GSE30610 | GEO
MetabolomicsExometabolomic profiling of bacterial strains cultivated using Arabidopsis root extract as the sole carbon source
The ability of microorganisms to use root-derived metabolites as growth substrates is a key trait for success in the rhizospheric niche. However, few studies describe which specific metabolites are consumed, or to what degree microbial strains differ in their substrate consumption patterns. Here we ...
2018-10-16 | MTBLS555 | MetaboLights
GenomicsCitrobacter rodentium
[E-MTAB-502] Citrobacter rodentium transcriptomics (Regulation)
PRJNA144515 | ENA
GenomicsChanges in histone modifications H3K4me2, H3k27me3 and H3K36me3 due to phenobarbital in mice
29-32 days old male mice where either treated with Phenobarbital or untreated Replicated control/treated study with IP and Input per group and antibody
ORGANISM(S): Mus musculus 
2012-11-10 | E-GEOD-41399 | biostudies-arrayexpress
TranscriptomicsRNA-Seq of C. rodentium
Whole genome trancription study of Citrobacter rodentium grown in rich media.
ORGANISM(S): Citrobacter rodentium 
2011-02-12 | E-MTAB-502 | biostudies-arrayexpress
TranscriptomicsRapid reprogramming of epigenetic and transcriptional profiles in mammalian culture systems
Gene expression in mouse embryonic fibroblasts (MEFS) during adaptation to cell culture conditions was analysed, and revealed rapid reprogramming of the transcription in culture.
ORGANISM(S): Mus musculus 
2014-12-17 | E-MTAB-3172 | biostudies-arrayexpress
TranscriptomicsRapid reprogramming of epigenetic and transcriptional profiles in mammalian culture systems
Comparison of the methylation profile of mouse embryonic fibroblasts (MEFs) before and during adaptation to cell culture conditions. Matched expression data is deposited under accession: E-MTAB-3172
ORGANISM(S): Mus musculus 
2014-12-17 | E-MTAB-3176 | biostudies-arrayexpress
GenomicsRapid reprogramming of epigenetic and transcriptional profiles in mammalian culture systems (hmeDIP-seq)
5hmC profiling of mouse embryonic fibroblasts before and during adaptation to cell culture conditions using 5hmC-Seq. Related data sets for this study have also been deposited in ArrayExpress under accessions E-MTAB-3172 (expression profiling by microarray), E-MTAB-3176 (methylation profiling of 5-m...
ORGANISM(S): Mus musculus 
2014-12-19 | E-MTAB-3183 | biostudies-arrayexpress
TranscriptomicsRapid reprogramming of epigenetic and transcriptional profiles in mammalian culture systems
5-hmC profiling of mouse embryonic fibroblasts before and during adaptation to cell culture conditions using hMeDIP-chip
ORGANISM(S): Mus musculus 
2014-12-17 | E-MTAB-3177 | biostudies-arrayexpress
MetabolomicsRapid Evaporative Ionisation Mass Spectrometry (REIMS) Provides Accurate Direct from Culture Species Identification within the Genus Candida
Members of the genus Candida, such as C. albicans and C. parapsilosis, are important human pathogens. Other members of this genus, previously believed to carry minimal disease risk, are increasingly recognised as important human pathogens, particularly because of variations in susceptibilities to wi...
2017-11-01 | MTBLS383 | MetaboLights
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