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TranscriptomicsRandom monoallelic gene expresson in ESC and NPC from C57BL6xCAST hybrid
The goal of this experiment is to identify autosomal random monoallelic gene in ESC and NPC from a C57BL6J x CAST hybrid
ORGANISM(S): Mus musculus 
2014-02-26 | E-MTAB-1822 | biostudies-arrayexpress
TranscriptomicsSNP array in NPC and ESC from C57BL6xCAST hybrid
Genomic profiling by array to find chromosomic region with aneuploidy in NPC and ESC clones from hybride C57BL5 and CAST mouse
ORGANISM(S): Mus musculus 
2014-02-25 | E-MTAB-1823 | biostudies-arrayexpress
GenomicsTranscription Factor binding evolution in five mouse species
This study aims to compar transcription factor binding region between five mouse species.
ORGANISM(S): Mus caroli 
2013-08-30 | E-MTAB-1414 | biostudies-arrayexpress
GenomicsChip-seq of three TF in Rat liver
This study aims to study genome wide location of HNF4a, FoxA1 and CEBPA in wild type rat liver. Please note that all raw data files for this study were replaced with new versions on 12 March 2014 because the previous versions are corrupted. The corrupted files are associated with ENA run accession...
ORGANISM(S): Rattus norvegicus 
2013-08-30 | E-MTAB-1415 | biostudies-arrayexpress
TranscriptomicsGenome variation and conserved regulation identify genomic regions responsible for strain specific phenotypes of metabolic syndrome in rats
We developed a method to prioritise strain-specific haplotypes by integrating genomic variation and genomic regulatory data predicted to be involved in specific phenotypes. To identify genomic regions associated with metabolic syndrome (MetS), a disorder of energy utilization and storage affecting s...
ORGANISM(S): Rattus norvegicus 
2017-08-03 | E-MTAB-5939 | biostudies-arrayexpress
GenomicsChIP-Seq analysis of CCCTC-binding factor (CTCF) binding in rodents
We explored the microevolutionary trends of CTCF binding evolution by preforming ChIP-seq experiments in five closely related Mus strains, subspecies and species: Mus musculus domesticus, Mus musculus castaneus, Mus spretus, Mus caroli and Mus pahari. All experiments were performed in adult male liv...
ORGANISM(S): Mus musculus domesticus 
2018-03-06 | E-MTAB-5769 | biostudies-arrayexpress
TranscriptomicsMethylation profiling by array of human and TC1 and TC0 mouse strain livers and testes to study human repetitive elements on human chromosome 21 in a heterologous mouse environment
The aim of this project is to study human repetitive elements on human chromosome 21 in a heterologous mouse environment (Tc1 mouse). To determine the unbiased regulation of the human genome, suppressed regions of human chromosome 21 were identified in vivo in liver and testes of human and Tc1 mouse...
ORGANISM(S): Mus musculus 
2012-12-13 | E-MTAB-1304 | biostudies-arrayexpress
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