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Genomics
(727)
Transcriptomics
(617)
Unknown
(158)
Proteomics
(50)
Metabolomics
(21)
Other
(11)
Models
(3)
Genomic
(1)
Methylation profiling
(1)
Multiomics
(1)
Organisms
Mus musculus
(194)
Homo sapiens
(164)
Arabidopsis thaliana
(36)
Saccharomyces cerevisiae
(36)
Drosophila melanogaster
(33)
Schizosaccharomyces pombe
(27)
Caenorhabditis elegans
(15)
Escherichia coli
(14)
Gallus gallus
(13)
Saccharomyces cerevisiae SK1
(12)
Dictyostelium discoideum
(12)
Plasmodium falciparum
(11)
Rattus norvegicus
(11)
Streptomyces coelicolor
(8)
Coprinopsis cinerea
(7)
Danio rerio
(7)
Vibrio harveyi
(6)
Populus trichocarpa
(4)
Mycobacterium tuberculosis
(4)
Caenorhabditis briggsae
(3)
Saccharomyces cerevisiae Sigma1278b
(3)
Laccaria bicolor S238N-H82
(3)
Saccharomyces paradoxus
(3)
Oryctolagus cuniculus
(2)
Amphimedon queenslandica
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Aspergillus parasiticus
(2)
Haliotis asinina
(2)
cellular organisms
(1)
Caenorhabditis brenneri
(1)
Prochlorococcus marinus subsp. pastoris str. CCMP1986
(1)
Organisms
Mus musculus
(181)
Homo sapiens
(138)
Drosophila melanogaster
(29)
fungus metagenome
(24)
Saccharomyces cerevisiae
(23)
Arabidopsis thaliana
(22)
Caenorhabditis elegans
(13)
Escherichia coli
(12)
Plasmodium falciparum
(12)
Rattus norvegicus
(9)
Synechococcus elongatus PCC 7942 = FACHB-805
(8)
Danio rerio
(7)
Gallus gallus
(7)
Dictyostelium discoideum
(6)
Saccharomyces cerevisiae SK1
(5)
Coprinopsis cinerea
(3)
Streptomyces coelicolor
(3)
Vibrio harveyi
(3)
Chlamydomonas reinhardtii
(3)
Glycine max
(3)
root metagenome
(3)
Coccidioides posadasii str. Silveira
(2)
Cryptococcus neoformans H99
(2)
Galdieria sulphuraria
(2)
Xenopus laevis
(2)
Xenopus tropicalis
(2)
Acanthamoeba castellanii
(2)
Galleria mellonella
(2)
Ambystoma mexicanum
(2)
Schmidtea mediterranea
(2)
Repository
ENA
(679)
geo
(373)
biostudies-arrayexpress
(303)
pride
(37)
MetabolomicsWorkbench
(17)
MassIVE
(8)
BioModels
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MetaboLights
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PeptideAtlas
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ExpressionAtlas
(2)
EGA
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GPMDB
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dbGaP
(1)
GNPS
(1)
Tissue
Cell culture
(15)
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(11)
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(10)
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(3)
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(2)
T cell
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(1)
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(1)
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(1)
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(1)
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(1)
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(1)
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(1)
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(1)
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(1)
Foreskin fibroblast cell line
(1)
Heart
(1)
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(1)
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(1)
Lung
(1)
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(1)
Milk
(1)
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(1)
Neuroendocrine tumor cell
(1)
Ovary
(1)
Disease
Severe acute respiratory syndrome
(9)
Normal
(8)
Cancer
(5)
Malaria
(3)
Not Available
(2)
Carcinoma
(2)
Colon carcinoma
(1)
Phytophthora capsici infected
(1)
Adenovirus infected
(1)
Disease free
(1)
Lung cancer
(1)
Multiple myeloma
(1)
Myocardial infarction
(1)
Osteoarthritis
(1)
Small intestine neuroendocrine neoplasm
(1)
Toxoplasmosis
(1)
Technology Type
Mass Spectrometry
(54)
Shotgun proteomics
(29)
ESI
(11)
EI
(6)
Bottom-up proteomics
(5)
Mass spectrometry
(3)
Data-dependent acquisition
(2)
Illumina HiSeq 2000, ILLUMINA
(1)
Multiple
(1)
Affinity purification coupled with mass spectrometry proteomics
(1)
Data-independent acquisition
(1)
SWATH MS
(1)
Top-down proteomics
(1)
Instrument Platform
Illumina NovaSeq 6000
(8)
Illumina HiSeq 2500
(6)
Axon GenePix 4000B scanning hardware
(5)
NextSeq 500
(4)
Illumina Genome Analyzer IIx
(2)
NextSeq 2000
(2)
Illumina HiSeq 2000
(2)
Instrument
(2)
Orbitrap Exploris 480
(2)
Q Exactive
(2)
TimsTOF Pro
(2)
Liquid Chromatography MS - negative - hilic
(2)
Liquid Chromatography MS - positive - hilic
(2)
Element AVITI
(1)
Agilent Drosophila Gene Expression Microarray, 4x44K arrays; Agilent Microarray Hybridization Oven (G2545A)
(1)
Agilent Scanner C
(1)
Illumina HiSeq
(1)
Axon GenePix 4000A scanning hardware
(1)
Illumina BeadArray reader
(1)
Scanning hardware
(1)
Illumina HiSeq 1500
(1)
Illumina HiSeq 4000
(1)
MaXis
(1)
Orbitrap Eclipse
(1)
Orbitrap Fusion Lumos
(1)
Q Exactive HF-X
(1)
Q Exactive Plus
(1)
QTRAP 5500
(1)
QTRAP 6500+
(1)
Liquid Chromatography MS -
(1)
Publication Date
2013
(68)
2010
(61)
2021
(45)
2014
(44)
2008
(43)
2007
(37)
2012
(36)
2015
(35)
2016
(33)
2025
(30)
2009
(29)
2026
(28)
2004
(27)
2020
(27)
2022
(26)
2018
(26)
2006
(26)
2024
(24)
2011
(24)
2005
(24)
2023
(16)
2017
(13)
2019
(8)
2003
(2)
CHEBI ID
CHEBI:36080
(2)
CHEBI:16610
(2)
CHEBI:33697
(1)
CHEBI:35222
(1)
CHEBI:136254
(1)
CHEBI:71881
(1)
CHEBI:71871
(1)
CHEBI:167224
(1)
CHEBI:71846
(1)
CHEBI:71844
(1)
CHEBI:71826
(1)
CHEBI:145855
(1)
CHEBI:167277
(1)
CHEBI:167266
(1)
CHEBI:156028
(1)
CHEBI:167229
(1)
CHEBI:167227
(1)
CHEBI:71839
(1)
CHEBI:156015
(1)
CHEBI:71833
(1)
CHEBI:167217
(1)
CHEBI:167219
(1)
CHEBI:194401
(1)
CHEBI:89824
(1)
CHEBI:74930
(1)
CHEBI:194400
(1)
CHEBI:194399
(1)
CHEBI:194398
(1)
CHEBI:64608
(1)
CHEBI:194374
(1)
Metabolite Name
Nicotinamide adenine dinucleotide phosphate (NADP+)
(1)
Beta-Nicotinamide adenine dinucleotide reduced (NADH)
(1)
Beta-Nicotinamide adenine dinucleotide (NAD+)
(1)
Adenosine 5'-triphosphate (5'-ATP)
(1)
Inosine 5'-monophosphate (5'-IMP)
(1)
Ketoleucine (4-Methyl-2-oxopentanoic acid)
(1)
S-(5'-Adenosyl)-L-methionine (SAM)
(1)
Adenosine 5'-monophosphate (5'-AMP)
(1)
L-Glutathione reduced
(1)
L-Glutathione oxidized
(1)
Spermidine IS (13C4 labeled)
(1)
L-(+)-Lactic acid
(1)
Acetyl-CoA
(1)
Pyruvic acid
(1)
Coenzyme A
(1)
Spermidine
(1)
NADPH
(1)
Alpha-Ketoglutaric acid
(1)
Taurine
(1)
Adenosine diphosphate (ADP)
(1)
First Public Date
2014
(205)
2018
(62)
2025
(47)
2021
(46)
2024
(44)
2022
(44)
2020
(40)
2026
(36)
2023
(35)
2017
(31)
2019
(28)
2015
(23)
2016
(19)
2013
(18)
2012
(1)
Modelling Approach
Ordinary differential equation model
(3)
Lab affiliation
Centre for Proteome Research, University of Liverpool, Liverpool, UK
(9)
Centre for Cancer Cell & Molecular Biology, Barts Cancer Institute, Queen Mary University of London, Charterhouse Square, London EC1M 6BQ, UK.
(2)
Assistant Professor of Microbiology, Immunology, and Cancer Biology Associate Director for Diversity, Equity, and Inclusio at the Carter Immunology Center University of Virginia Charlottesville, VA
(1)
Australian Institute for Bioengineering and Nanotechnology, The University of Queensland
(1)
Bioinformatic
(1)
CENTD, Instituto Butantan
(1)
Cambridge Institute for Medical Research, University of Cambridge, Cambridge, CB2 0XY, UK.
(1)
Department of Biochemistry, University of Missouri, Columbia, Missouri
(1)
Department of Cell Biology, Blavatnik Institute, Harvard Medical School, 240 Longwood Ave, Boston MA 02115, USA Aligning Science Across Parkinson’s (ASAP) Collaborative Research Network, Chevy Chase, MD 20815, USA
(1)
Department of Cell Biology, Harvard Medical School, USA
(1)
Department of Laboratory Medicine and Helen Diller Family Comprehensive Cancer Center, University of California San Francisco, United States of America
(1)
Department of oncology and pathology, Karolilnska Institutet, Stockholm, Sweden
(1)
Departments of Chemistry, Biological Sciences, Microbiology and Immunology, Vanderbilt University
(1)
Dept. Oncology Pathology, Science for Life Laboratory, Karolinska Institutet, Sweden
(1)
Global Health Institute EPFL Switzerland
(1)
Laboratory for Aging and Infertility Research, Department of Biology, Northeastern University
(1)
MRC Protein Phosphorylation and Ubiquitylation Unit, University of Dundee, Dow St, Dundee, DD1 5EH, Scotland, UK
(1)
MRC-Laboratory of Molecular Biology Cell Biology Division
(1)
MRC-Laboratory of Molecular Biology Francis Crick Avenus Cambridge CB20QH
(1)
McKetta Department of Chemical Engineering, The University of Texas at Austin, USA
(1)
Principle Investigator
(1)
Roy J. Carver Dept. of Biochemistry, Biophysics, and Molecular Biology Iowa State University Ames, IA USA
(1)
SPHERE research group, School of Biomolecular and Biomedical Science, Conway Institute, University College Dublin
(1)
Salk Institute, La Jolla, CA USA
(1)
School of Life Sciences, University of Nevada Las Vegas, USA
(1)
The Francis Crick Institute Signalling in Apicomplexan Parasites Laboratory London NW1 1AT United Kingdom
(1)
University of Cambridge
(1)
University of Victoria
(1)
Tags
pathogen
(53)
pathogen:bacterium
(24)
pathogen:protozoan
(22)
xref:PubMed:16626502
(10)
xref:PubMed:32101750
(9)
pathogen:fungus
(7)
xref:PubMed:16469056
(6)
xref:PubMed:35879318
(5)
xref:PubMed:34480152
(5)
xref:PubMed:37460697
(4)
xref:PubMed:17565378
(4)
xref:PubMed:41844614
(4)
xref:PubMed:22318145
(3)
xref:PubMed:29237075
(3)
xref:PubMed:35392965
(3)
xref:PubMed:24315105
(3)
xref:PubMed:24517586
(3)
xref:PubMed:15256208
(3)
xref:PubMed:33376219
(3)
xref:PubMed:23204455
(3)
xref:PubMed:41264258
(3)
xref:PubMed:40950051
(3)
xref:PubMed:41073798
(3)
xref:PubMed:30274593
(2)
xref:PubMed:38693268
(2)
xref:PubMed:37973953
(2)
xref:PubMed:37386214
(2)
xref:PubMed:37306293
(2)
xref:PubMed:34790902
(2)
xref:PubMed:15336692
(2)
IsPrivate
False
(3)
Classification
bacteria
(24)
protozoa
(22)
fungi
(7)
Modification
15.994915
(1)
42.010565
(1)
58.005479
(1)
Study type
Transcription profiling by array
(212)
RNA-seq of coding RNA
(30)
Unknown experiment type
(12)
RNA-seq of coding RNA from single cells
(10)
ChIP-seq
(6)
RNA-seq of non coding RNA
(6)
ChIP-chip by array
(5)
Transcription profiling by tiling array
(3)
Cell line - High-throughput sequencing
(2)
Other
(2)
ScATAC-seq
(2)
GRO-seq
(1)
ChIP-chip by tiling array
(1)
Plant - High-throughput sequencing
(1)
Translation profiling
(1)
Animal - High-throughput sequencing
(1)
RNAi profiling by array
(1)
Comparative genomic hybridization by array
(1)
DNA-seq
(1)
Proteomic profiling by array
(1)
Methylation profiling by high throughput sequencing
(1)
Release Date
2013
(55)
2010
(49)
2016
(33)
2015
(29)
2014
(28)
2012
(27)
2011
(23)
2021
(21)
2008
(20)
2004
(18)
2024
(18)
2022
(16)
2023
(16)
2007
(15)
2019
(14)
2020
(13)
2025
(12)
2009
(12)
2017
(11)
2005
(11)
2018
(7)
2026
(6)
2006
(5)
2003
(2)
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Xenopus tropicalis regeneration timecourse
Not available
ORGANISM(S):
Xenopus tropicalis
ST002271
|
MetabolomicsWorkbench
Cite
Rat Retinal Detachment Metabolomics Timecourse
Not available
ORGANISM(S):
Rattus norvegicus
ST000832
|
MetabolomicsWorkbench
Cite
Timecourse of palmitate isotopomers in LNCaP Cells
Not available
ORGANISM(S):
Homo sapiens
ST000494
|
MetabolomicsWorkbench
Cite
Timecourse of TCA isotopomers in LNCaP Cells
Not available
ORGANISM(S):
Homo sapiens
ST000507
|
MetabolomicsWorkbench
Cite
Timecourse of TCA panel in LNCaP Cells
Not available
ORGANISM(S):
Homo sapiens
ST000506
|
MetabolomicsWorkbench
Cite
Timecourse of Amino Acid Metabolites in LNCaP Cell pellets
Not available
ORGANISM(S):
Homo sapiens
ST000505
|
MetabolomicsWorkbench
Cite
Timecourse exometabolome analysis of glucose grown Rubrivivax benzoatilyticus cells
Not available
ORGANISM(S):
Rubrivivax benzoatilyticus
ST001956
|
MetabolomicsWorkbench
Cite
Timecourse of TCA isotopomers in LNCaP Cells and Media
Not available
ORGANISM(S):
Homo sapiens
ST000504
|
MetabolomicsWorkbench
Cite
Peroxide antimalarial treatment timecourse on ring-stage P. falciparum parasites
Not available
ORGANISM(S):
Plasmodium falciparum;Homo sapiens
ST001202
|
MetabolomicsWorkbench
Cite
Peroxide antimalarial treatment timecourse on trophozoite-stage P. falciparum parasites
Not available
ORGANISM(S):
Plasmodium falciparum;Homo sapiens
ST001201
|
MetabolomicsWorkbench
Cite
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