Tir1 - OmicsDI

Show results for

Unknown (183)
Genomics (74)
Transcriptomics (42)
Proteomics (16)
Metabolomics (2)
Models (1)

Organisms

Arabidopsis thaliana (16)
Andropogon gerardi (16)
Archaea (16)
Bacteria (16)
Borrelia (16)
Botrytis cinerea (16)
Candida albicans (16)
Clostridium perfringens (16)
Cnidaria (16)
Eukaryota (16)
Fasciola (16)
Fungi (16)
Hepatitis B virus (16)
Human betaherpesvirus 5 (16)
Influenza C virus (16)
Japanese encephalitis virus group (16)
Miscanthus x giganteus (16)
Mycobacterium tuberculosis (16)
Orthoflavivirus (16)
Panicum virgatum (16)
Platyhelminthes (16)
Rickettsia (16)
Saccharomyces cerevisiae (11)
Caenorhabditis elegans (6)
Toxoplasma gondii (6)
Mus musculus (5)
Arabidopsis (1)
Citrus maxima (1)
Citrus sinensis (1)
Schizosaccharomyces pombe (1)

Organisms

Homo sapiens (13)
Mus musculus (10)
Caenorhabditis elegans (9)
Toxoplasma gondii (7)
Arabidopsis thaliana (4)
Saccharomyces cerevisiae (3)
Toxoplasma (1)
Citrus maxima (1)
Schizosaccharomyces pombe (1)
Citrus sinensis (1)

Repository

ENA (69)
biostudies-arrayexpress (28)
geo (18)
pride (16)
MetaboLights (2)
ExpressionAtlas (1)
BioModels (1)

Tissue

Cell culture (3)
Plant cell (3)
Embryo (2)
Root (2)
Seedling (2)
Cell in vitro (1)
Embryonic stem cell (1)
Stem cell (1)
Thyroid gland (1)

Disease

Disease free (2)
Colon cancer (1)
Toxoplasmosis (1)

Technology Type

Mass Spectrometry (16)
Shotgun proteomics (7)
Affinity purification coupled with mass spectrometry proteomics (4)
Mass spectrometry (2)
Bottom-up proteomics (2)
All-ion fragmentation (1)
Chemical cross-linking coupled with mass spectrometry proteomics (1)
Data-dependent acquisition (1)
Data-independent acquisition (1)
DiaPASEF (1)
Gel-based experiment (1)
SRM/MRM (1)

Instrument Platform

Illumina NovaSeq 6000 (2)
NextSeq 500 (2)
Gas Chromatography MS - positive (2)
Liquid Chromatography MS - positive - reverse phase (2)
Liquid Chromatography MS - negative - reverse phase (2)
NextSeq 550 (1)
Illumina HiSeq 2000 (1)

Publication Date

2020 (8)
2023 (8)
2024 (6)
2022 (5)
2025 (4)
2021 (4)
2011 (4)
2009 (4)
2016 (3)
2012 (3)
2008 (3)
2007 (3)
2017 (3)
2026 (2)
2015 (2)
2010 (2)
2013 (1)
2019 (1)

UNIPROT ID/AC

Q9XFM0 (1)
Q940U6 (1)

CHEBI ID

CHEBI:141588 (2)
CHEBI:42111 (2)
CHEBI:24266 (2)
CHEBI:27997 (2)
CHEBI:16113 (2)
CHEBI:44215 (2)
CHEBI:16856 (2)
CHEBI:18237 (2)
CHEBI:17533 (2)
CHEBI:7676 (2)
CHEBI:28867 (2)
CHEBI:16668 (2)
CHEBI:17311 (2)
CHEBI:28875 (2)
CHEBI:15741 (2)
CHEBI:37024 (2)
CHEBI:16865 (2)
CHEBI:17929 (2)
CHEBI:7916 (2)
CHEBI:17549 (2)
CHEBI:15891 (2)
CHEBI:18183 (2)
CHEBI:16919 (2)
CHEBI:28716 (2)
CHEBI:183249 (1)
CHEBI:72426 (1)
CHEBI:134487 (1)
CHEBI:134575 (1)
CHEBI:65294 (1)
CHEBI:65302 (1)

Metabolite Name

Beta-Nicotinamide adenine dinucleotide (2)
PC 40:6|PC 18:1_22:5 (1)
PC 38:4|PC 18:1_20:3 (1)
PC 33:1|PC 17:0_16:1 (1)
PC 31:1|PC 15:0_16:1 (1)
PC 31:0|PC 14:0_17:0 (1)
PC 29:0|PC 14:0_15:0 (1)
S-Hydroxymethylglutathione (1)
PC 32:2|PC 16:1_16:1 (1)
Glutathione (reduced) (1)
LPI 16:0 (1)
PC 40:7|PC 18:2_22:5 (1)
PC 34:2|PC 16:1_18:1 (1)
PC 30:0|PC 14:0_16:0 (1)
PC 30:1|PC 14:0_16:1 (1)
PC 28:0|PC 14:0_14:0 (1)
PE 34:2|PE 16:1_18:1 (1)
PE 36:2|PE 18:1_18:1 (1)
PC 38:5|PC 18:1_20:4 (1)
Gamma-Glutamylglutamine (1)
Glutamylaspartic acid (1)
Gamma-Glutamylisoleucine (1)
Isobutyrylcarnitine (1)
N-Acetyl-DL-methionine (1)
Cytidine triphosphate (1)
D-Erythrose-4-phosphate (1)
Palmitylcarnitine (1)
D-Sedoheptulose 7-phosphate (1)
Catelaidic acid (1)
5-Thymidylic acid (1)

First Public Date

2023 (11)
2022 (10)
2025 (9)
2020 (9)
2021 (7)
2019 (7)
2024 (5)
2026 (4)
2017 (2)
2014 (2)
2018 (1)
2016 (1)
2015 (1)

Modelling Approach

Ordinary differential equation model (1)

Lab affiliation

Associate Professor, Department of Biology, Massachusetts Institute of Technology and Whitehead Institute of Biomedical Research (3)
Associate Professor, Whitehead Institute for Biomedical Research and Massachusettes Institute of Technology (1)
Associate Professor, Whitehead Institute for Biomedical Research and Massachusetts Institute of Technology (1)
Department of Biology Boston University Boston, MA, USA (1)
Department of Microbiology & Molecular Medicine, Medical University Center, University of Geneva, Geneva, Switzerland (1)
Harvard Medical School (1)
Institute of Science and Technology Austria (ISTA), Klosterneuburg, Niederoesterreich, Austria (1)
Institute of Science and Technology, Austria, Klosterneuburg. (1)
Instituto de Fisiología, Biología Molecular y Neurociencias (IFIBYNE), CONICET-UBA, Buenos Aires, Argentina (1)
Leibniz Institute of Plant Biochemistry (1)
Luz Irina A. Calderón Villalobos, PhD. Head of Signal Integration Research Group Molecular Signal Processing Dept. Leibniz Institute of Plant Biochemistry (IPB) Weinberg 3, D-06120 Halle (Saale) Germany (1)
Proteome Analytics, Leibniz Institute of Plant Biochemistry (1)
University of Aberdeen School of Medicine, Medical Sciences and Nutrition Institute of Medical Sciences, Foresterhill Aberdeen AB25 2ZD Scotland, United Kingdom (1)
University of Edinburgh (1)

IsPrivate

False (1)

Classification

protozoa (7)

Study type

Transcription profiling by array (18)
RNA-seq of coding RNA (3)
ChIP-chip by tiling array (1)
High-throughput sequencing (1)
Animal - High-throughput sequencing (1)
Capture-C (1)
Other (1)
ChIP-seq (1)
DNA-seq (1)

Release Date

2022 (20)
2023 (19)
2020 (17)
2024 (17)
2025 (15)
2016 (13)
2021 (12)
2015 (12)
2018 (10)
2019 (9)
2012 (8)
2011 (8)
2014 (8)
2009 (7)
2017 (7)
2008 (6)
2010 (5)
2026 (4)
2013 (4)
2007 (4)
1999 (2)
2004 (1)
2003 (1)
2000 (1)
1998 (1)

Previous page
1 / 32
You're on page 1
page 2
page 3
page 4
page 5
page ...
page 32
Next page

Sort by:

Relevance

Page size

Transcription of TIR1-Controlled Genes Can be Regulated within 10 Min by an Auxin-Induced Process. Can TIR1 be the Receptor?

Not available

S-EPMC4939301 | biostudies-literature

Involvement of Snf7 and Rim101 in regulation of TIR1 and anaerobically up-regulated genes in yeast

Despite the scientific and applied interest in anaerobic metabolism of Saccharomyces cerevisiae, not all genes whose transcription is up-regulated under anaerobic conditions have yet been linked to known transcription factors. Experiments with a reporter construct in which the promoter of the anaero...

ORGANISM(S): Saccharomyces cerevisiae

2009-09-25 | GSE18128 | GEO

Capture-C experiments on auxin treated control (E14-Tir) and Scc1-AID, Ring1b-AID, Ring1b-AID-Scc1-AID and CTCF-AID (with and without a 6-hour auxin treatment) cells

The aim of the experiment was to gain a higher resolution for specific regions of interest to complement the Hi-C results. Capture-C experiments were performed on four-inducible degrons for Scc1, Ringb, Ring1b-Scc1 and CTCF, and Tir1 control, always in triplicates (three biological replicates per co...

ORGANISM(S): Mus musculus

2020-01-23 | E-MTAB-7840 | biostudies-arrayexpress

A Super Strong Engineered Auxin-TIR1 Pair.

Not available

S-EPMC6084576 | biostudies-literature

Chemical hijacking of auxin signaling with an engineered auxin-TIR1 pair.

Not available

S-EPMC5812785 | biostudies-literature

TIR1-produced cAMP as a second messenger in transcriptional auxin signalling.

Not available

S-EPMC12018254 | biostudies-literature

Genetic analysis of the Arabidopsis TIR1/AFB auxin receptors reveals both overlapping and specialized functions.