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Unknown (6130)
Transcriptomics (722)
Proteomics (124)
Genomics (100)
Metabolomics (28)
Models (3)
Genomic (2)

Organisms

Homo sapiens (389)
Mus musculus (240)
Drosophila melanogaster (54)
Rattus norvegicus (36)
Saccharomyces cerevisiae (23)
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Methanococcus maripaludis S2 (15)
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Danio rerio (6)
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Oncorhynchus nerka (1)
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Turnip mosaic virus (1)
Cocksfoot streak virus (1)

Organisms

Homo sapiens (8)
Mus musculus (5)
Rattus norvegicus (3)
Saccharomyces cerevisiae (2)
Carassius auratus (2)
Alcaligenes ammonioxydans (1)
Agrobacterium fabrum str. C58 (1)
Oncorhynchus mykiss (1)
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Repository

biostudies-arrayexpress (770)
pride (87)
ENA (29)
MetaboLights (27)
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geo (12)
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Tissue

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Disease

Disease free (4)
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Pre-tumoral lesion in a mouse model of human adamantinomatous craniopharyngioma (ACP) (1)
Internal Carotid Artery Stenosis (NCI Metathesaurus C0340569) has DiseaseStaging Asymptomatic (1)
Carotid artery disease: ASYMPTOMATIC high-grade inner carotid artery stenosis (1)
ARR7ox-4-11 (1)
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Nephrolithiasis (1)
Osteosarcoma (1)

Technology Type

Mass Spectrometry (87)
Shotgun proteomics (38)
Mass spectrometry (24)
Bottom-up proteomics (21)
Data-dependent acquisition (12)
Gel-based experiment (7)
Affinity purification coupled with mass spectrometry proteomics (6)
Top-down proteomics (5)
Chemical cross-linking coupled with mass spectrometry proteomics (4)
Mass spectrometry assay (2)
SRM/MRM (2)
SWATH MS (2)
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NMR spectroscopy assay (1)
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Instrument Platform

Illumina HiSeq 4000 (12)
Illumina HiSeq 2000 (11)
NextSeq 500 (11)
Illumina NovaSeq 6000 (10)
Illumina HiSeq 2500 (7)
AB SOLiD System 3.0 (2)
GenePix 4000B [Axon Instruments] (2)
Illumina HiSeq 3000 (2)
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(Make:PerkinElmer,Model:ScanArray 4000XL) (1)
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Unspecified (1)
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ScanArray [PerkinElmer] (1)
ScanArray 5000 [PerkinElmer] (1)
GenePix 4000A [Axon Instruments] (1)
Spectronic Helios Alpha UV-Vis spectrophotometer (1)
Illumina Genome Analyzer IIx (1)
ScanArray Express HT [PerkinElmer] (1)
Illumina Genome Analyzer II (1)

Publication Date

2010 (114)
2013 (100)
2012 (86)
2014 (78)
2015 (67)
2011 (67)
2008 (52)
2009 (47)
2016 (40)
2021 (36)
2025 (31)
2007 (31)
2023 (28)
2022 (27)
2017 (21)
2020 (20)
2005 (19)
2024 (17)
2026 (14)
2019 (14)
2018 (12)
2006 (7)
2004 (3)
2003 (1)

UNIPROT ID/AC

A0A024RC46 (3)
A0A087WTX5 (3)
A0A087WVW2 (3)
A0A087WYL9 (3)
A0A087X130 (3)
A0A087X1V9 (3)
A0A0A0MS07 (3)
A0A0A0MS51 (3)
A0M8Q6 (3)
A0N5G5 (3)
A2BFH1 (3)
A2NI60 (3)
A2NUT2 (3)
A4F255 (3)
A5A3E0 (3)
A6NHL2 (3)
A6NNZ2 (3)
A8MTJ3 (3)
A8MUU1 (3)
B1AK88 (3)
B1N7B8 (3)
B2RXF3 (3)
O00187 (1)
P01024 (1)
P02741 (1)
P04003 (1)
P06681 (1)
P0C0L4 (1)
P0C0L5 (1)
Q15485 (1)

ENSEMBL ID

ENSG00000170477 (3)
ENSG00000229353 (1)

CHEBI ID

CHEBI:16737 (12)
CHEBI:16919 (12)
CHEBI:17268 (11)
CHEBI:17368 (11)
CHEBI:17568 (11)
CHEBI:30769 (11)
CHEBI:15428 (10)
CHEBI:15741 (10)
CHEBI:16708 (10)
CHEBI:16750 (10)
CHEBI:17596 (10)
CHEBI:17750 (10)
CHEBI:18050 (10)
CHEBI:18183 (10)
CHEBI:30915 (10)
CHEBI:32816 (10)
CHEBI:7916 (10)
CHEBI:15603 (9)
CHEBI:15756 (9)
CHEBI:15891 (9)
CHEBI:16015 (9)
CHEBI:16414 (9)
CHEBI:16704 (9)
CHEBI:16755 (9)
CHEBI:16857 (9)
CHEBI:17115 (9)
CHEBI:17196 (9)
CHEBI:17562 (9)
CHEBI:18132 (1)
CHEBI:506227 (1)

Metabolite Name

Creatine (6)
Creatinine (6)
AMP (5)
Creatinine (5)
Glycine (5)
Hypoxanthine (5)
Ornithine (5)
Taurine (5)
Uracil (5)
Uracil (5)
Xanthosine (5)
Adenine (4)
Betaine (4)
D-Fructose (4)
GMP (4)
Guanosine (4)
Hypoxanthine (4)
Inosine (4)
L-Arginine (4)
L-Asparagine (4)
L-Cystine (4)
L-Glutamine (4)
L-Isoleucine (4)
L-Leucine (4)
L-Methionine (4)
L-Phenylalanine (4)
L-Proline (4)
L-Tryptophan (4)
L-Valine (4)
Palmitic acid (4)

First Public Date

2026 (6)
2025 (5)
2024 (5)
2023 (3)
2022 (3)
2014 (3)
2020 (2)
2015 (2)

Modelling Approach

Ordinary differential equation model (2)
Constraint-based model (1)

Lab affiliation

Department of Microbiology and Immunology, University of Melbourne at the Peter Doherty Institute for infection and immunity, Melbourne, 3000, Australia (10)
Institute of Pharmaceutical Chemistry, Goethe University, Max-von-Laue-Str. 9, 60438 Frankfurt am Main, Germany Structural Genomics Consortium (SGC), Buchmann Institute for Life Sciences, Max-von-Laue-Str. 15, 60438 Frankfurt am Main, Germany German Cancer Consortium (DKTK) Mainz/Frankfurt, German Cancer Research Center (DKFZ), 69120 Heidelberg, Germany (3)
Cardiovascular and Metabolic Diseases, Duke-NUS Medical School, Singapore (2)
Department of Biochemistry & Molecular Biology, University of Southern Denmark, Campusvej 55, DK-5230 Odense M, Denmark (2)
Philip Morris International R&D, Philip Morris Products S.A., Quai Jeanrenaud 5, 2000 Neuchâtel, Switzerland (part of Philip Morris International group of companies) (2)
University of Bayreuth, Universitätsstrasse 30, 95447 Bayreuth, Germany (2)
(Monash University). Y. T. Candace Ho: yee.ho@monash.edu (Monash University) (1)
Academia Sinica Institute of Biological Chemistry(IBC), Dr. Shih-Hsiung Wu's lab, Taipei, Taiwan (R.O.C.) (1)
Advanced Water Managment Center, The University of Queensland (1)
Bernhard Nocht Institute for Tropical Medicine, Hamburg, Germany (1)
Biomedicine Discovery Institute, Monash University, Clayton 3800, Victoria, Australia (1)
Biomolecular Mass Spectrometry and Proteomics, Bijvoet Center for Biomolecular Research and Utrecht Institute for Pharmaceutical Sciences, Utrecht University, Padualaan 8, 3584 CH Utrecht, The Netherlands Netherlands Proteomics Centre, Padualaan 8, 3584 CH Utrecht, The Netherlands (1)
Biomolecular characterization unit, Center for Sustainable Resource Science, RIKEN (1)
Biotherapeutics Translational Research Center, Korea Research Institute of Bioscience and Biotechnology (KRIBB), 125 Gwahak-ro, Yuseong-gu, Daejeon, Korea (1)
Boston University (1)
Cancer Science Institute of Singapore, National University of Singapore (1)
Cardiovascular & Metabolic Disorders, Duke-NUS Medical School, Singapore (1)
Centre for Addiction and Mental Health (1)
Chair, Cancer Biology & Genetics Program, SKI; Chair, Geoffrey Beene Cancer Research Center; Investigator, Howard Hughes Medical Institute; (1)
College of Pharmacy, Seoul National University (1)
Core facility for mass spectrometry and proteomics ZMBH, University Heidelberg Im Neuenheimer Feld 282 69120 Heidelberg Germany (1)
Dana-Farber Cancer Institute 450 Brookline Avenue, Longwood Center 3217 Boston, MA 02215 (1)
Department of Biology State Key Laboratory of Environmental and Biological Analysis Hong Kong Baptist University, Hong Kong (1)
Department of Biology, University of Konstanz, Universitaetsstrasse 10, 78457 Konstanz, Germany (1)
Department of Biomedical Science and Environmental Biology, College of Life Science, Kaohsiung Medical University (1)
Department of Cancer Research and Molecular Medicine Faculty of Medicine Laboratory Centre, 5th floor. Erling Skjalgssons gt. 1 Norwegian University of Science and Technology NTNU 7006 Trondheim, Norway Tel: +47 72573076; Fax: +47 72576400 Cell. phone: +47 91825455 (1)
Department of Chemistry, University of Missouri-Columbia (1)
Department of Developmental Biology, University of Pittsburgh, USA (1)
Department of Infectious Disease, Imperial College London (1)
Department of Medical Biotechnology, Faculty of Biochemistry, Biophysics and Biotechnology, Jagiellonian University, Kraków, Poland (1)

IsPrivate

False (3)

Model Flag

Non Kinetic (1)

Classification

bacteria (1)

Study type

Transcription profiling by array (501)
RNA-seq of coding RNA (72)
ChIP-seq (45)
RNA-seq of non coding RNA (40)
Unknown experiment type (16)
Transcription profiling by tiling array (15)
RNA-seq of coding RNA from single cells (10)
Cell line - High-throughput sequencing (9)
ChIP-chip by array (8)
Comparative genomic hybridization by array (7)
Other (7)
Methylation profiling by high throughput sequencing (6)
ChIP-chip by tiling array (5)
MicroRNA profiling by array (5)
Methylation profiling by array (5)
Proteomic profiling by array (4)
Transcription profiling by SAGE (3)
Cell line - One-color microarray (2)
RNAi profiling by array (2)
DNA-seq (2)
Plant - High-throughput sequencing (1)
Human - One-color microarray (1)
Animal - High-throughput sequencing (1)
ScATAC-seq (1)
Genotyping by high throughput sequencing (1)
RNA-seq of total RNA (1)

Release Date

2022 (762)
2025 (727)
2021 (674)
2023 (664)
2024 (651)
2020 (492)
2019 (374)
2018 (341)
2015 (274)
2017 (266)
2016 (265)
2014 (250)
2013 (216)
2010 (187)
2012 (182)
2011 (144)
2009 (106)
2026 (99)
2008 (87)
2007 (58)
2005 (26)
2006 (21)
2004 (11)
2003 (9)
2000 (4)
1999 (4)
2002 (3)
1998 (2)
2001 (1)

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Gene expression signatures of HO-1 in BeWo cells

Heme Oxygenase-1 (HO-1) is expressed in many cancers and influences the growth, survivall and metastasis of tumors, however, the molecular mechanisms remains largely unknown. To identify a common mechanism of action of HO-1 in cancer, we studied the global effect of HO-1 on the transcriptome of mul...

ORGANISM(S): Homo sapiens

2011-02-15 | E-GEOD-20404 | biostudies-arrayexpress

The effect of HO-1 overexpression on microRNA transcriptome in NCI-H292 lung cancer cells

The aim was to determine the effect of heme oxygenase-1 (HO-1) overexpression on microRNA transcriptome in human non-small cell lung carcinoma cell line (NCI-H292). Since the cells of different HO-1 genotypes were used (cells are after retroviral transduction with empty vector with normal level of H...

ORGANISM(S): Homo sapiens

2013-04-27 | E-GEOD-37779 | biostudies-arrayexpress

HO-1 modulates the expression of genes involved in inflammation, angiogenesis, proliferation, apoptosis and cell adhesion in human lung cancer cells.

The enzymatic activity of HO-1 results in decreased oxidative stress, attenuated inflammatory response, and very often in a lower rate of apoptosis. This is due to removal of heme, a potent prooxidant and proinflammatory agent, but mainly because of generation of biologically active products such as...

ORGANISM(S): Homo sapiens

2011-10-18 | E-GEOD-22030 | biostudies-arrayexpress

siRNAs 15-29 nucleotides long with 100 percent hit to Turnip mosaic virus clone GBR98

Mustard (Brassica juncea) was tested for Turnip mosaic virus infection. Small RNA of the plant was extracted and converted to DNA according to Ho, T., et al. (2006) Journal of Virological Methods 136:217-223, with primers modified to contain 454 adapter nucleotide sequences. The DNA then passed qua...

ORGANISM(S): Turnip mosaic virus

2008-09-11 | E-GEOD-12053 | biostudies-arrayexpress

siRNAs 15-29 nucleotides long with 100 percent hit to Cocksfoot streak virus

Cocksfoot grass (Dactylis glomerata) collected from Wytham, Oxford, UK, was tested for Cocksfoot streak virus infection. Small RNA of the grass was extracted and converted to DNA according to Ho, T., et al. (2008) Biochem Biophys Res Commun. 368:433-7, with primers modified to contain 454 adapter n...

ORGANISM(S): Cocksfoot streak virus

2008-09-11 | E-GEOD-12052 | biostudies-arrayexpress

Transcriptome data of Alcaligenes sp. HO-1 in response to ammonium stimulation at several time points.

A heterotrophic ammonia-oxidizing bacterium Alcaligenes sp. HO-1 was isolated from the activated sludge of a bioreactor treating ammonia-rich piggery wastewater. The goal and objectives of this experiment are to analyze the transcriptome profiles of nitrogen-metabolism-related genes of Alcaligenes s...

ORGANISM(S): Alcaligenes ammonioxydans

2022-05-20 | GSE174685 | GEO

Transcriptome data of Alcaligenes sp. HO-1 in response to ammonium stimulation at several time points.

PRJNA731116 | ENA

An Innovative Method for BTEX Emission Inventory and Development of Mitigation Measures in Developing Countries-A Case Study: Ho Chi Minh City, Vietnam.

Not available

S-EPMC9738250 | biostudies-literature

HO-1197 as a Multifaceted Therapeutic: Targeting the Cell Cycle, Angiogenesis, Metastasis, and Tumor Immunity in Hepatocellular Carcinoma.

Not available

S-EPMC12609843 | biostudies-literature

Global transcriptomic profiles of blood monocytes from Hmox1 homozygous knockout mice compared to wild type controls following Mtb infection

Since whole blood transcriptome profiling has been proposed as a reliable measure of immune responses in TB patients and because the plasma levels of HO-1 have been suggested as a potential TB diagnostic marker, we wanted to see the differences in the global transcriptomic profiles and the downstrea...

ORGANISM(S): Mus musculus

2019-03-05 | E-MTAB-7221 | biostudies-arrayexpress

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