Tong M M - OmicsDI

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Unknown (12343)
Proteomics (341)
Transcriptomics (102)
Genomics (75)
Metabolomics (68)
Multiomics (6)
Models (2)

Organisms

Homo sapiens (234)
Mus musculus (104)
Rattus norvegicus (22)
Escherichia coli (12)
Arabidopsis thaliana (7)
Oryza sativa (7)
Saccharomyces cerevisiae (7)
Drosophila melanogaster (6)
Mycobacterium tuberculosis H37Rv_2009 (2)
Yersinia pestis CO92 (2)
Chlamydomonas reinhardtii (1)
Shewanella loihica PV-4 (1)
Brassica oleracea (1)
Brassica rapa (1)
Yersinia pestis (1)
Schizosaccharomyces pombe (1)
Oryza sativa Japonica Group (1)
Cryptococcus neoformans (1)
Triticum aestivum (1)
Danio rerio (1)
121791 (1)
Chlorocebus sabaeus (1)
Helicobacter pylori G27 (1)
Hendra virus horse/Australia/Hendra/1994 (1)
Mycolicibacterium smegmatis MC2 51 (1)
Ophiocordyceps sinensis (1)
Severe acute respiratory syndrome coronavirus 2 (1)
Spinacia oleracea (1)
unclassified Chlorella (1)
unclassified Symbiodinium (1)

Organisms

Mus musculus (19)
Homo sapiens (5)
seawater metagenome (3)
Vreelandella titanicae (2)
Yersinia pestis (1)
Mycobacterium (1)
Salmonella enterica subsp. enterica serovar Enteritidis (1)
marine sediment metagenome (1)
uncultured bacterium (1)
Macaca mulatta (1)
Solanum lycopersicum (1)

Repository

pride (244)
biostudies-arrayexpress (118)
iProX (72)
MetaboLights (66)
ENA (48)
MassIVE (19)
EGA (11)
PeptideAtlas (3)
BioModels (2)
GNPS (2)
jPOST (2)
PanoramaPublic (1)

Tissue

Cell culture (59)
Epithelial cell (17)
Lung (17)
Liver (12)
Cell suspension culture (9)
Abdominal adipose tissue (8)
Leaf (8)
Brain (7)
Heart (7)
Permanent cell line cell (6)
Testis (6)
Blood (5)
Blood cell (5)
Bone marrow (5)
Hepatocyte (5)
Plant cell (5)
Blood serum (4)
Kidney (4)
Macrophage (4)
Skin (4)
Spleen (4)
Whole body (4)
Others (3)
B cell (3)
Blood plasma (3)
Early embryonic cell (3)
Embryo (2)
Embryonic stem cell (2)
Esophagus (2)
HeLa cell (2)

Disease

Acute leukemia (6)
Breast cancer (4)
Lung cancer (4)
Disease free (3)
Rheumatoid arthritis (3)
Brain disease (2)
Colon cancer (2)
Hepatocellular carcinoma (2)
Influenza (2)
Liver cancer (2)
Non-small cell lung carcinoma (2)
Neonatal abstinence syndrome (1)
Gastric cancer (1)
Acute myocardial infarction (1)
Alzheimer's disease 1 (1)
Aortic dissection (1)
Cardiovascular system disease (1)
Chronic myeloid leukemia (1)
Dehydration (1)
Esophageal cancer (1)
Gastric body carcinoma (1)
Herpes simplex (1)
Human immunodeficiency virus infectious disease (1)
Inflammation (1)
Kidney disease (1)
Lung benign neoplasm (1)
Lung carcinoma in situ (1)
Lymphoma (1)
Malaria (1)
Malignant neoplasm of ovary (1)

Technology Type

Mass Spectrometry (244)
Shotgun proteomics (111)
Mass spectrometry (43)
Bottom-up proteomics (33)
Affinity purification coupled with mass spectrometry proteomics (32)
Data-dependent acquisition (27)
Gel-based experiment (27)
Mass spectrometry assay (21)
Data-independent acquisition (14)
SWATH MS (6)
Top-down proteomics (6)
SRM/MRM (3)
NMR spectroscopy (2)
Affinity proteomics (2)
All-ion fragmentation (2)
Chemical cross-linking coupled with mass spectrometry proteomics (2)
Affymetrix 6.0 (1)
Illumina HiSeq 2000 (1)
NMR spectroscopy assay (1)
DiaPASEF (1)
Glycoproteomics (1)
Mass spectrometry imaging (1)

Instrument Platform

Liquid Chromatography MS - negative - reverse phase (25)
Liquid Chromatography MS - positive - reverse phase (25)
Liquid Chromatography MS - negative - reverse-phase (8)
Liquid Chromatography MS - positive - reverse-phase (7)
Liquid Chromatography MS - negative - hilic (6)
Illumina NovaSeq 6000 (5)
Orbitrap Exploris 120 (4)
Q Exactive Plus (4)
Liquid Chromatography MS - positive - hilic (4)
MS:1000031 (3)
Q Exactive HF-X (3)
Gas Chromatography MS - positive (3)
Illumina HiSeq 2500 (2)
Illumina HiSeq 2000 (2)
Orbitrap Exploris 480 (2)
Q Exactive (2)
6540 Q-TOF LC/MS (Agilent) (2)
API 4000 QTRAP (AB Sciex) (2)
Bruker (2)
Exactive (Thermo Scientific) (2)
Liquid Chromatography MS - (2)
Vortex (1)
HiSeq X Ten (1)
Illumina HiSeq 4000 (1)
NextSeq 500 (1)
Orbitrap Elite mass spectrometer(Thermo) (1)
Orbitrap Fusion Lumos (1)
Q Exactive HF (1)
Synapt G2 MS (1)
TripleTOF 5600 (1)

Publication Date

2025 (77)
2026 (61)
2022 (53)
2024 (46)
2023 (45)
2021 (37)
2014 (27)
2020 (26)
2016 (26)
2015 (18)
2013 (16)
2018 (16)
2019 (16)
2012 (15)
2017 (14)
2010 (10)
2008 (8)
2011 (4)
2006 (3)
2005 (2)
2007 (2)
2004 (2)
2009 (1)

UNIPROT ID/AC

A0A024R563 (3)
A0A024R8H9 (3)
A0A024RAN2 (3)
A0A024RC46 (3)
A0A087WUD1 (3)
A0A087WVZ5 (3)
A0A087WWK8 (3)
A0A087WXI0 (3)
A0A087WZE9 (3)
A0A087X1S3 (3)
A0A0A0MR66 (3)
A0A0A0MS51 (3)
A0A0A0MSA7 (3)
A0A0B4J220 (3)
A0A0C4DG89 (3)
A0A0C4DGT3 (3)
A0AV96 (3)
A0AVT1 (3)
A0FGR8 (3)
A0FGR8-2 (3)
A0FGR8-6 (3)
A0JLT2 (3)
A0JNW5 (3)
A0MZ66 (3)
A0PJW6 (3)
A0PK00 (3)
A1A4S6 (3)
A1L0T0 (3)
A1L170 (3)
A1L390 (3)

ENSEMBL ID

ENSG00000147251 (3)
ENSG00000170477 (3)
ENSG00000247315 (3)

CHEBI ID

CHEBI:30769 (18)
CHEBI:16704 (15)
CHEBI:15428 (14)
CHEBI:16708 (14)
CHEBI:16750 (14)
CHEBI:25017 (14)
CHEBI:29016 (14)
CHEBI:30915 (14)
CHEBI:15741 (13)
CHEBI:15756 (13)
CHEBI:17368 (13)
CHEBI:17596 (13)
CHEBI:18012 (13)
CHEBI:32816 (13)
CHEBI:78320 (13)
CHEBI:15611 (12)
CHEBI:15891 (12)
CHEBI:16335 (12)
CHEBI:16449 (12)
CHEBI:16737 (12)
CHEBI:16919 (12)
CHEBI:17509 (12)
CHEBI:17750 (12)
CHEBI:17822 (12)
CHEBI:26986 (12)
CHEBI:17154 (11)
CHEBI:30746 (11)
CHEBI:15354 (10)
CHEBI:15940 (10)
CHEBI:16027 (10)

Metabolite Name

Hypoxanthine (19)
Taurine (16)
Adenine (15)
Inosine (14)
Guanosine (13)
Adenosine (12)
Cytosine (12)
L-Tryptophan (12)
Pyridoxine (12)
Uridine (12)
L-Threonine (11)
Allantoin (10)
Choline (10)
Creatine (10)
Creatinine (10)
Glycine (10)
L-Serine (10)
L-Tyrosine (10)
L-Valine (10)
Leucine (10)
Benzoic acid (9)
Betaine (9)
Indole (9)
L-Lysine (9)
L-Phenylalanine (9)
L-Proline (9)
Oleamide (9)
Xanthine (9)
Alanine (8)
Asparagine (8)

First Public Date

2024 (11)
2023 (11)
2025 (6)
2022 (4)
2021 (3)
2020 (3)
2026 (2)
2019 (2)
2017 (2)
2014 (2)
2018 (1)
2013 (1)

Modelling Approach

Ordinary differential equation model (1)

Lab affiliation

Shanghai Jiao Tong University (11)
Bio-X Institutes, Key Laboratory for the Genetics of Developmental and Neuropsychiatric Disorders (Ministry of Education), Shanghai Jiao Tong University, Shanghai, China (5)
School of Automation and Intelligent Sensing, Shanghai Jiao Tong University (5)
Laboratory of Microbiology Oceanography, State Key Laboratory of Microbial Metabolism, School of Life Sciences and Biotechnology, State Key Laboratory of Ocean Engineering, Shanghai Jiao Tong University, School of Oceanography, Shanghai JiaoTong University (4)
Shanghai Center for Systems Biomedicine, Key Laboratory of Systems Biomedicine (Ministry of Education), Shanghai Jiao Tong University, Shanghai 200240, China (3)
Shanghai Institute of Hematology, State Key Laboratory of Medical Genomics, Collaborative Innovation Center of Hematology, National Research Center for Translational Medicine at Shanghai, Ruijin Hospital, Shanghai Jiao Tong University School of Medicine, Shanghai 200000, China (3)
State Key Laboratory of Microbial Metabolism, Joint International Research Laboratory of Metabolic & Developmental Sciences, School of Life Sciences and Biotechnology, Shanghai Jiao Tong University, China. (3)
State Key Laboratory of Microbial Metabolism, Joint International Research Laboratory of Metabolic & Developmental Sciences, School of Life Sciences and Biotechnology, Shanghai Jiao Tong University, Shanghai, 200240, China (3)
1 Interdisciplinary Research Center on Biology and Chemistry, State Key Laboratory of Chemical Biology, Shanghai Institute of Organic Chemistry, Chinese Academy of Sciences, Shanghai 201210, China 2 Shanghai Academy of Natural Sciences (SANS), Shanghai Institute of Organic Chemistry, Chinese Academy of Sciences, Shanghai 201210, China (2)
1. Department of Biochemistry and Molecular Cell Biology, State Key Laboratory of Oncogenes and Related Genes, Shanghai Key Laboratory for Tumor Microenvironment and Inflammation, Key Laboratory of Cell Differentiation and Apoptosis of Chinese Ministry of Education, Shanghai Jiao Tong University School of Medicine. (2)
1VIB Center for Medical Biotechnology, VIB, Ghent, 9052, Belgium 2Department of Biomolecular Medicine, Ghent University, Ghent, 9052, Belgium (2)
Beijing Key Laboratory for Dairy Cow Nutrition, Beijing University of Agriculture (2)
Brain Injury Center, Renji Hospital, School of Medicine, Shanghai Jiao Tong University; Shanghai Institute of Head Trauma, Shanghai, China, 200127. (2)
College of Veterinary Medicine, Northwest A&F University, Yangling, Shaanxi 712100, P.R. China (2)
Department of Laboratory Medicine, Ren Ji Hospital, School of Medicine, Shanghai Jiao Tong University, Shanghai, China. (2)
Department of Medicine, Nephrology and Pharmacological Sciences, Icahn School of Medicine at Mount Sinai (2)
Division of Medical Inflammation Research, Dept. Medical Biochemistry and Biophysics, Karolinska Institute, Sweden (2)
Institute of Molecular Medicine (IMM), Renji Hospital, School of Medicine, Shanghai Jiao Tong University, Shanghai 200240, China. (2)
Institute of Tropical Bioscience and Biotechnology, Chinese Academy of Tropical Agricultural Sciences, Haikou, 571101, China. (2)
Ph.D., Professor, Vice Dean (2)
Ruijin Hospital, Shanghai Jiao Tong University School of Medicine (2)
School of Biomedical Sciences, The Chinese University of Hong Kong (2)
Shanghai Center for Systems Biomedicine Shanghai Jiao Tong University (2)
Shanghai Institute of Rheumatology, Renji Hospital, Shanghai Jiao Tong University School of Medicine (SJTUSM) (2)
Shanghai Institute of Thoracic Oncology, Shanghai Chest Hospital, Shanghai Jiao Tong University, Shanghai 200030 (2)
Shanghai Jiao Tong University Affiliated Sixth People's Hospital (2)
State Key Laboratory of Microbial Metabolism, School of Life Sciences and Biotechnology, Shanghai Jiao Tong University, Shanghai 200240, China (2)
State Key Laboratory of Reproductive Medicine and Offspring Health， Nanjing Medical University, Nanjing, China. (2)
The Fifth Affiliated Hospital of Guangzhou Medical University (2)
The Hospital For Sick Children, Program in Molecular Structure and Function, Princess Margaret Cancer Centre, and Department of Molecular Genetics, University of Toronto. Peter Gilgan Centre for Research and Learning, 686 Bay Street, Toronto M5G 0A4, Canada (2)

IsPrivate

False (2)

Model Flag

Non Kinetic (1)

Classification

bacteria (3)

Modification

Not available (1)

Study type

Transcription profiling by array (60)
RNA-seq of coding RNA (20)
ChIP-seq (14)
Unknown experiment type (5)
ChIP-chip by tiling array (4)
RNA-seq of coding RNA from single cells (4)
Human - High-throughput sequencing (2)
ChIP-chip by array (2)
Methylation profiling by high throughput sequencing (2)
Spatial transcriptomics by high-throughput sequencing (1)
Other (1)
Single nucleus RNA sequencing (1)
Methylation profiling by array (1)
RNA-seq of non coding RNA (1)

Release Date

2025 (1890)
2022 (1792)
2023 (1560)
2024 (1454)
2021 (1390)
2020 (902)
2019 (669)
2018 (525)
2017 (448)
2016 (409)
2015 (326)
2026 (311)
2014 (255)
2013 (154)
2012 (105)
2011 (75)
2010 (60)
2009 (45)
2008 (36)
2006 (15)
2007 (12)
2004 (10)
2005 (7)
2002 (4)
2001 (2)
2003 (1)
2000 (1)
1999 (1)
1998 (1)
1997 (1)

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Effects of Yulin Tong Bu formula on modulating gut microbiota and fecal metabolite interactions in mice with polycystic ovary syndrome

BACKGROUND: Polycystic ovarian syndrome (PCOS) is a common endocrine disorder characterized by hyperandrogenism, ovarian dysfunction and polycystic ovarian morphology. Gut microbiota dysbiosis and metabolite are associated with PCOS clinical parameters. Yulin Tong Bu formula (YLT...

2023-02-02 | MTBLS6736 | MetaboLights

Circular RNA circBNC2 regulates epithelial cell G2-M arrest to prevent fibrotic maladaptive repair

Epithelial cells arrested in G2/M phase of the cell cycle after injury is a key checkpoint for determining the wound-healing to either normal cell proliferation or fibrosis. The mechanism that regulates the fibrogenic response after injury is not well understood. Here, we identified a kidney- and li...

ORGANISM(S): Homo Sapiens

2022-04-18 | PXD033284 |

Identification of Serine 119 as an Effective Inhibitor Binding Site of M. tuberculosis Ubiquitin-like Protein Ligase PafA Using Purified Proteins and M. smegmatis.

Not available

S-EPMC5952411 | biostudies-literature

De Novo Mutation of m.3243A>G together with m.16093T>C Associated with Atypical Clinical Features in a Pedigree with MIDD Syndrome.

Not available

S-EPMC6476128 | biostudies-literature

Identification and Mapping of a New Soybean Male-Sterile Gene, mst-M.

Not available

S-EPMC6372514 | biostudies-literature

CAMK2D recruits RNF8-MAD2 complex to RNA splicing proteins for mitotic checkpoint activation in GBM

Glioblastoma (GBM) is a lethal brain tumor with remarkable intra-tumoral heterogeneity and therapeutic resistance which is linked to glioma stem cell (GSC). GSC contains unstable genome and elevated genomic instability could impair GSC self-renewal and tumorigenicity. In addition, GSC displays great...

ORGANISM(S): Homo Sapiens (human)

2023-07-21 | PXD038123 | JPOST Repository

Absorption-Dominant mmWave EMI Shielding Films with Ultralow Reflection using Ferromagnetic Resonance Frequency Tunable M-Type Ferrites.

Not available

S-EPMC10050308 | biostudies-literature

M. barkeri biohybrid with silicate modified nZVI

PRJNA1262350 | ENA

Histone methylation modification patterns and relevant M-RiskScore in acute myeloid leukemia.

Not available

S-EPMC9508520 | biostudies-literature

FEN1 Promotes Hepatocellular Carcinoma Progression by Activating Cell Cycle Transition from G2 To M Phase.

Not available