Tong Tong T - OmicsDI

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Unknown (10039)
Proteomics (268)
Genomics (226)
Transcriptomics (91)
Metabolomics (44)
Multiomics (6)
Other (2)
Genomic (1)

Organisms

Homo sapiens (189)
Mus musculus (78)
Rattus norvegicus (17)
Arabidopsis thaliana (9)
Yersinia pestis CO92 (9)
Oryza sativa (7)
Escherichia coli (7)
Drosophila melanogaster (5)
Bos taurus (4)
Bombyx mori (4)
Thermococcus eurythermalis (4)
Sus scrofa domesticus (3)
Saccharomyces cerevisiae (2)
Mycobacterium tuberculosis H37Rv_2009 (2)
Severe acute respiratory syndrome coronavirus 2 (2)
Staphylococcus aureus (2)
Trypanosoma brucei (2)
Hypophthalmichthys nobilis (1)
Yersinia pestis (1)
Oryza sativa Indica Group (1)
Candida albicans (1)
Danio rerio (1)
Caenorhabditis elegans (1)
Chlorocebus sabaeus (1)
Helicobacter pylori G27 (1)
Mycolicibacterium smegmatis MC2 51 (1)
Oryctolagus cuniculus (1)
Ovis aries (1)
Vibrio cholerae O1 biovar El Tor str. N16961 (1)
Actinosynnema pretiosum (1)

Organisms

Mus musculus (93)
Homo sapiens (62)
Trichoderma sp. LZ117 (1)
Tulipa fosteriana (1)
Trichoderma reesei QM6a (1)
Macaca fascicularis (1)
uncultured bacterium (1)
Mus (1)
Mus musculus musculus (1)
Oryza sativa (1)
Oryza sativa Japonica Group (1)
Solanum lycopersicum (1)
Drosophila melanogaster (1)

Repository

ENA (208)
pride (132)
iProX (99)
biostudies-arrayexpress (98)
MetaboLights (44)
MassIVE (17)
PeptideAtlas (14)
EGA (11)
jPOST (4)
GPMDB (2)
PanoramaPublic (2)
dbGaP (1)

Tissue

Cell culture (23)
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Cell suspension culture (5)
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Blood (2)
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Blood plasma (2)
Blood serum (2)
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HeLa cell (2)
Hepatocyte (2)
Permanent cell line cell (2)
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Synovium (2)
Anterior chamber of the eye (1)

Disease

Disease free (4)
Acute leukemia (3)
Rheumatoid arthritis (3)
Not Available (2)
Breast cancer (2)
Colon cancer (2)
Septic peritonitis (1)
Acute kidney failure (1)
Cardiovascular system disease (1)
Dehydration (1)
Esophageal cancer (1)
Hepatocellular carcinoma (1)
Human immunodeficiency virus infectious disease (1)
Kidney disease (1)
Lung benign neoplasm (1)
Lymphoma (1)
Malaria (1)
Malignant pleural mesothelioma (1)
Myopia (1)
Non-small cell lung carcinoma (1)
Osteoarthritis (1)
Parkinson's disease (1)
Polycystic Kidney (1)
Proliferative diabetic retinopathy (1)
Pulmonary fibrosis (1)
Rhabdomyosarcoma (1)
Severe acute respiratory syndrome (1)
Trypanosomiasis (1)
Uveal melanoma (1)
Wounds and Injuries (1)

Technology Type

Mass Spectrometry (132)
Shotgun proteomics (78)
Mass spectrometry (23)
Mass spectrometry assay (20)
Affinity purification coupled with mass spectrometry proteomics (17)
Bottom-up proteomics (11)
Data-dependent acquisition (10)
Gel-based experiment (8)
Data-independent acquisition (5)
Top-down proteomics (5)
SWATH MS (3)
SRM/MRM (2)
Affymetrix 6.0 (1)
Illumina HiSeq 2000 (1)
Illumina HiSeq 2500 (1)
NMR spectroscopy (1)
NMR spectroscopy assay (1)
Chemical cross-linking coupled with mass spectrometry proteomics (1)
DiaPASEF (1)
Glycoproteomics (1)
Proteogenomics (1)

Instrument Platform

Liquid Chromatography MS - positive - reverse phase (15)
Liquid Chromatography MS - negative - reverse phase (14)
TripleTOF 5600 (12)
Liquid Chromatography MS - negative - hilic (5)
Liquid Chromatography MS - negative - reverse-phase (5)
Liquid Chromatography MS - positive - hilic (5)
Liquid Chromatography MS - positive - reverse-phase (5)
Q Exactive HF-X (4)
Q Exactive Plus (4)
Liquid Chromatography MS - alternating - hilic (4)
Illumina NovaSeq 6000 (3)
Illumina HiSeq 4000 (3)
MS:1000031 (3)
Instrument (2)
Orbitrap Exploris 480 (2)
Q Exactive (2)
6540 Q-TOF LC/MS (Agilent) (2)
API 4000 QTRAP (AB Sciex) (2)
Exactive (Thermo Scientific) (2)
TSQ Quantum XLS (Thermo Scientific) (2)
Vortex (1)
Illumina HiSeq 2500 (1)
NextSeq 500 (1)
Orbitrap Elite mass spectrometer(Thermo) (1)
Q Exactive HF (1)
TimsTOF HT (1)
5975C Series GC/MSD (Agilent) (1)
6460 Triple Quadrupole LC/MS (Agilent) (1)
Agilent 5975E GC/MSD (Agilent) (1)
Bruker (1)

Publication Date

2023 (43)
2025 (41)
2022 (41)
2026 (39)
2021 (37)
2024 (36)
2020 (25)
2016 (24)
2015 (23)
2014 (17)
2012 (16)
2013 (14)
2010 (12)
2017 (9)
2011 (7)
2008 (7)
2018 (7)
2019 (5)
2007 (3)
2006 (2)
2009 (1)
2004 (1)

UNIPROT ID/AC

A0A024RC46 (14)
B3KML9 (14)
B3KT93 (14)
B4DRV9 (14)
B4E3A4 (14)
E9PB61 (14)
G5E972 (14)
G8JLB6 (14)
H0YAR2 (14)
H0YJH7 (14)
I3L4N8 (14)
J9JID7 (14)
O00148 (14)
O00571 (14)
O15523 (14)
O43143 (14)
O43390 (14)
O60506 (14)
O60832 (14)
O94973 (14)
O95678 (14)
O95782 (14)
O95782-2 (14)
P02533 (14)
P02538 (14)
P02545 (14)
P02545-2 (14)
P02545-3 (14)
P02786 (14)
P04259 (14)

ENSEMBL ID

ENSG00000170477 (12)
ENSG00000247315 (7)
ENSG00000147251 (4)

CHEBI ID

CHEBI:15756 (11)
CHEBI:16708 (10)
CHEBI:30769 (10)
CHEBI:15428 (9)
CHEBI:16704 (9)
CHEBI:16750 (9)
CHEBI:17368 (9)
CHEBI:17596 (9)
CHEBI:25017 (9)
CHEBI:29016 (9)
CHEBI:15611 (8)
CHEBI:15741 (8)
CHEBI:16335 (8)
CHEBI:16737 (8)
CHEBI:16811 (8)
CHEBI:16919 (8)
CHEBI:17154 (8)
CHEBI:17509 (8)
CHEBI:17750 (8)
CHEBI:26986 (8)
CHEBI:30805 (8)
CHEBI:78320 (8)
CHEBI:15891 (7)
CHEBI:15963 (7)
CHEBI:16040 (7)
CHEBI:16235 (7)
CHEBI:16449 (7)
CHEBI:16695 (7)
CHEBI:16856 (7)
CHEBI:17568 (7)

Metabolite Name

Adenine (15)
Inosine (14)
Taurine (13)
Hypoxanthine (12)
Uridine (10)
Adenosine (9)
Allantoin (9)
Betaine (9)
Glycine (9)
Guanosine (9)
L-Serine (9)
Asparagine (8)
Creatine (8)
Creatinine (8)
Glutamine (8)
L-Tryptophan (8)
Pyridoxine (8)
Choline (7)
Cytidine (7)
Cytosine (7)
Diethanolamine (7)
Glycolic acid (7)
L-Alanine (7)
L-Phenylalanine (7)
L-Threonine (7)
L-Tyrosine (7)
L-Valine (7)
Methionine (7)
Pyroglutamic acid (7)
Riboflavin (7)

First Public Date

2026 (42)
2024 (42)
2025 (37)
2023 (31)
2022 (17)
2021 (11)
2020 (5)
2019 (5)
2014 (5)
2018 (4)
2017 (4)
2015 (3)
2016 (2)

Modification

Not available (1)

Study type

Transcription profiling by array (63)
RNA-seq of coding RNA (15)
ChIP-seq (6)
Unknown experiment type (4)
RNA-seq of coding RNA from single cells (4)
ChIP-chip by tiling array (2)
RNA-seq of non coding RNA (2)
ChIP-chip by array (1)
Methylation profiling by high throughput sequencing (1)

Release Date

2025 (1521)
2022 (1470)
2023 (1302)
2024 (1200)
2021 (1166)
2020 (795)
2019 (538)
2018 (415)
2017 (331)
2016 (301)
2026 (259)
2015 (240)
2014 (185)
2013 (114)
2012 (91)
2011 (64)
2010 (51)
2008 (27)
2009 (24)
2007 (13)
2006 (12)
2005 (7)
2004 (4)
2000 (2)
1998 (2)
2003 (1)
1999 (1)

Lab affiliation

Laboratory of Microbiology Oceanography, State Key Laboratory of Microbial Metabolism, School of Life Sciences and Biotechnology, State Key Laboratory of Ocean Engineering, Shanghai Jiao Tong University, School of Oceanography, Shanghai JiaoTong University (4)
Shanghai Jiao Tong University (4)
Biological Science Research Center, Southwest University, Chongqing, 400715, China (3)
1VIB Center for Medical Biotechnology, VIB, Ghent, 9052, Belgium 2Department of Biomolecular Medicine, Ghent University, Ghent, 9052, Belgium (2)
College of Veterinary Medicine, Northwest A&F University, Yangling, Shaanxi 712100, P.R. China (2)
Department of Laboratory Medicine, Ren Ji Hospital, School of Medicine, Shanghai Jiao Tong University, Shanghai, China. (2)
Department of Medicine, Nephrology and Pharmacological Sciences, Icahn School of Medicine at Mount Sinai (2)
Division of Gastroenterology and Hepatology; Shanghai Institute of Digestive Disease; NHC Key Laboratory of Digestive Diseases; State Key Laboratory for Oncogenes and Related Genes; Renji Hospital, School of Medicine, Shanghai Jiao Tong University, Shanghai 200001, China (2)
Division of Medical Inflammation Research, Dept. Medical Biochemistry and Biophysics, Karolinska Institute, Sweden (2)
Shanghai Center for Systems Biomedicine Shanghai Jiao Tong University (2)
Shanghai Institute of Rheumatology, Renji Hospital, Shanghai Jiao Tong University School of Medicine (SJTUSM) (2)
Shanghai Jiao Tong University School of Medicine (2)
State Key Laboratory of Reproductive Medicine and Offspring Health， Nanjing Medical University, Nanjing, China. (2)
The Fifth Affiliated Hospital of Guangzhou Medical University (2)
Tsinghua University Institute for Immunology (2)
University of Florida (2)
1 Department of Cardiology, Zhongshan Hospital, Fudan University, Shanghai Institute of Cardiovascular Diseases, China. 2 Department of Cardiovascular Medicine, Ruijin Hospital, Shanghai Jiao Tong University School of Medicine, Shanghai, China. (1)
1 National Institute of Parasitic Diseases, Chinese Center for Disease Control and Prevention (Chinese Center for Tropical Diseases Research); NHC Key Laboratory of Parasite and Vector Biology; WHO Collaborating Center for Tropical Diseases; National Center for International Research on Tropical Diseases, Shanghai 200025, China 2 The School of Global Health, Chinese Center for Tropical Diseases Research, Shanghai Jiao Tong University School of Medicine, Shanghai 200025, China (1)
1 VIB Center for Medical Biotechnology, VIB, Ghent, East Flanders, 9052, Belgium 2 Department of Biomolecular Medicine, Ghent University, Ghent, East Flanders, 9052, Belgium (1)
1.Department of Otolaryngology-Head and Neck Surgery, Shanghai Ninth People's Hospital, Shanghai Jiao Tong University School of Medicine, Shanghai, China 2.Ear Institute, Shanghai Jiao Tong University School of Medicine, Shanghai, China 3.Shanghai Key Laboratory of Translational Medicine on Ear and Nose Diseases, Shanghai, China (1)
1State Key Laboratory of Digital Medical Engineering, Department of Otolaryngology Head and Neck Surgery, Zhongda Hospital, School of Life Sciences and Technology, School of Medicine, Advanced Institute for Life and Health, Jiangsu Province High-Tech Key Laboratory for Bio-Medical Research, Southeast University, Nanjing 210096, China.2 Co-Innovation Center of Neuroregeneration, Nantong University, Nantong 226001, China. (1)
Aarhus University, Denmark (1)
Beijing Key Laboratory for Dairy Cow Nutrition, Beijing University of Agriculture (1)
Bio-X Institutes, Key Laboratory for the Genetics of Development and Neuropsychiatric Disorders (Ministry of Education), Shanghai Key Laboratory of Psychotic Disorders, and Brain Science and Technology Research Center, Shanghai Jiao Tong University, 800 Dongchuan Road, Shanghai 200240, China. (1)
Biochemistry, YLL School of Medicine, NUS (1)
Bioheat and mass transfer laboratory, Med-X Research Institute, Shanghai Jiao Tong University (1)
Biological Science Research Center, Southwest University, Chongqing, 400715, China. (1)
Charles Perkins Centre, School of Medical Sciences, University of Sydney, Sydney, Australia. (1)
China (1)
China National Rice Research Institute (1)

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Effects of Yulin Tong Bu formula on modulating gut microbiota and fecal metabolite interactions in mice with polycystic ovary syndrome

BACKGROUND: Polycystic ovarian syndrome (PCOS) is a common endocrine disorder characterized by hyperandrogenism, ovarian dysfunction and polycystic ovarian morphology. Gut microbiota dysbiosis and metabolite are associated with PCOS clinical parameters. Yulin Tong Bu formula (YLT...

2023-02-02 | MTBLS6736 | MetaboLights

Two new species of the genus <i>Trilacuna</i> Tong & Li, 2007 (Araneae, Oonopidae) from the Nangunhe Nature Reserve, Yunnan Province, China.

Not available

S-EPMC12673334 | biostudies-literature

Mg2+ in drinking water exacerbates Salmonella Typhimurium T6SS-mediated intestinal bacterial competition through affecting metabolic reprogramming

By establishing a model of enteritis in mice infected with Salmonella Typhimurium, this study investigates the effects of ion concentration in drinking water on intestinal metabolites and microbiota structure in mice, as well as its influence on pathogen susceptibility and the host-patho...

2025-12-30 | MTBLS12690 | MetaboLights

Qu-Zhuo-Tong-Bi Decoction Alleviates Gouty Arthritis by Regulating Butyrate-Producing Bacteria in Mice.

Not available

S-EPMC7884811 | biostudies-literature

Taxonomic studies on the genus Trilacuna (Araneae, Oonopidae) from Myanmar.

Not available

S-EPMC7445191 | biostudies-literature

Two new species of the genus Trilacuna from Chongqing, China (Araneae, Oonopidae).

Not available

S-EPMC6043632 | biostudies-literature

Fractions of Shen-Sui-Tong-Zhi Formula Enhance Osteogenesis Via Activation of β-Catenin Signaling in Growth Plate Chondrocytes.

Not available

S-EPMC8498212 | biostudies-literature

Dissecting the Underlying Pharmaceutical Mechanism of Chinese Traditional Medicine Yun-Pi-Yi-Shen-Tong-Du-Tang Acting on Ankylosing Spondylitis through Systems Biology Approaches.

Not available

S-EPMC5647417 | biostudies-literature

Qu-zhuo-tong-bi decoction exerts gouty arthritis therapy by skewing macrophage polarization through butanoate metabolism.

Not available

S-EPMC12281712 | biostudies-literature

Proteomic Profiling and Functional Analysis of B Cell-Derived Exosomes upon Pneumocystis Infection

Pneumocystis is a life-threatening fungal pathogen frequently causing fatal pneumonia (PCP) in immunocompromised individuals with high mortality. Recently, B cells have been reported to play a crucial role in the pathogenesis of PCP through producing antibodies and activating CD4+ T cell response. E...

ORGANISM(S): Mus musculus (Mouse)

2022-04-26 | PXD030103 | Pride

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