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TranscriptomicsEvaluation of gene expression data generated from expired Affymetrix GeneChip® microarrays using MAQC reference RNA samples
The Affymetrix GeneChip® system is a commonly used platform for microarray analysis but the technology is inherently expensive. Unfortunately, changes in experimental planning and execution, such as the unavailability of previously anticipated samples or a shift in research focus, may render signifi...
ORGANISM(S): Homo sapiens 
2010-09-02 | E-GEOD-23906 | biostudies-arrayexpress
TranscriptomicsSEQC Toxicogenomics Study: microarray data set
The comparative advantages of RNA-Seq and microarrays in transcriptome profiling were evaluated in the context of a comprehensive study design. Gene expression data from Illumina RNA-Seq and Affymetrix microarrays were obtained from livers of rats exposed to 27 agents that comprised of seven modes o...
ORGANISM(S): Rattus norvegicus 
2014-08-08 | E-GEOD-47875 | biostudies-arrayexpress
TranscriptomicsComparing next-generation sequencing and microarray technologies in a toxicological study of the effects of aristolochic Acid on rat kidneys
RNA-Seq has been increasingly used for the quantification and characterization of transcriptomes. The ongoing development of the technology promises the more accurate measurement of gene expression. However, its benefits over widely accepted microarray technologies have not been adequately assessed,...
ORGANISM(S): Rattus norvegicus 
2012-02-02 | E-GEOD-21210 | biostudies-arrayexpress
TranscriptomicsSEQC Toxicogenomics Study: RNA-Seq data set
The comparative advantages of RNA-Seq and microarrays in transcriptome profiling were evaluated in the context of a comprehensive study design. Gene expression data from Illumina RNA-Seq and Affymetrix microarrays were obtained from livers of rats exposed to 27 agents that comprised of seven modes o...
ORGANISM(S): Rattus norvegicus 
2014-08-08 | E-GEOD-55347 | biostudies-arrayexpress
TranscriptomicsSEQC Project
This SuperSeries is composed of the SubSeries listed below. Refer to individual Series
ORGANISM(S): Rattus norvegicus 
2014-06-17 | E-GEOD-47792 | biostudies-arrayexpress
ProteomicsThe Quartet Data Portal: integration of community-wide resources for multiomics quality control (Proteomics)
The Project aims to provide resources for QC of multiple types of omic technologies and effective integration of diverse datasets from various scenarios. Large quantities of multi-omics materials, datasets, and best practice for their QC utilities were developed for whole process QC of large scale, ...
ORGANISM(S): Homo Sapiens 
PXD045065 |
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