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TranscriptomicsTonsil Atlas FASTQ files
This repository contains all the FASTQ files for the five data modalities (scRNA-seq, scATAC-seq, Multiome, CITE-seq+scVDJ-seq, and spatial transcriptomics) used in the article \\"An Atlas of Cells in The Human Tonsil,\\" published in Immunity in 2024. Inspired by the TCGA barcodes, we have named ea...
ORGANISM(S): Homo sapiens 
2024-05-02 | E-MTAB-13687 | biostudies-arrayexpress
TranscriptomicsSingle cell RNA-sequencing of human tonsil Innate lymphoid cells (ILCs)
Single cell RNA-sequencing of human tonsil Innate lymphoid cells (ILCs) from three independent tonsil donors. Sequencing libraries were prepared from FACS sorted individual ILCs with the Smart-Seq2 protocol (Picelli et al. Nature Methods 2013)
ORGANISM(S): Homo sapiens 
2016-01-27 | E-GEOD-70580 | biostudies-arrayexpress
ProteomicsDeciphering functional tumor-immune crosstalk through highly multiplexed imaging and deep visual proteomics
Deciphering the intricate tumor-immune interactions within the microenvironment is crucial for advancing cancer immunotherapy. Here, we introduced mipDVP, an advanced approach integrating highly multiplexed imaging, single-cell laser microdissection, and sensitive mass spectrometry to spatially prof...
ORGANISM(S): Homo sapiens (Human) 
2024-12-19 | PXD057118 | Pride
Cancer Multiplex staining Mass spectrometry Deep visual proteomics Tumor microenvironment 
TranscriptomicsGene expression signatures of human plasma cells isolated from different territories
In vivo antigen (Ag)-induced differentiation of B lymphocytes into plasma cells (PCs) takes place in extra-follicular foci and germinal centers of the secondary lymphoid organs (SLOs). Most of these SLO PCs are short-living and only relatively few PCs, characterized by secreting high-affinity antibo...
ORGANISM(S): Homo sapiens 
2015-01-05 | E-GEOD-59697 | biostudies-arrayexpress
TranscriptomicsTranscription profiling of human lymph node (sinuses) and tonsil (no sinuses) to identify signature genes that are prime candidates for mediating adhesion of tumor cells to sinusoidal cells
Lymph node vs. tonsil
ORGANISM(S): Homo sapiens 
2007-09-12 | E-GEOD-2665 | biostudies-arrayexpress
GenomicsTonsil cancer compared with normal tonsil tissue
Tonsil cancer compared with normal tonsil tissue
PRJNA306762 | ENA
GenomicsTonsil Sequencing dataset
Human tonsil tissue sequencing datasets, which include spatial antigen receptor repertoire profiling and spatial transcriptomics (Visium). This study includes two samples.
EGAS00001007337 | EGA
TranscriptomicsTranscription profiling of human head and neck squamous cell carcinoma (HNSCC) samples vs. normal tonsil samples
This SuperSeries is composed of the following subset Series: GSE13397: HNSCC samples vs. normal tonsil samples: self-self hybridization design GSE13398: HNSCC samples vs. normal tonsil samples: reference design Refer to individual Series
ORGANISM(S): Homo sapiens 
2009-01-21 | E-GEOD-13399 | biostudies-arrayexpress
TranscriptomicsTranscription profiling of human tonsil and oral epithelia
To study characteristics of the orapharyngeal epithelia which may influence susceptibility or resistance to HIV, we performed microarray analysis of the tonsil and gingival epithelium.Tonsil epithelium has been implicated in HIV pathogenesis, but its role in oral transmission remains controversial. ...
ORGANISM(S): Homo sapiens 
2008-06-15 | E-GEOD-7224 | biostudies-arrayexpress
TranscriptomicsHNSCC samples vs. normal tonsil samples: self-self hybridization design
transcription profiling of human head and neck squamous cell carcinoma (HNSCC) samples vs. normal tonsil samples using a self-self hybridization experimental design on two-color arrays. Used to identify differentially expressed genes in tumor/normal samples, and compare the result to that of the sam...
ORGANISM(S): Homo sapiens 
2010-05-06 | E-GEOD-13397 | biostudies-arrayexpress
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