Torpedo - OmicsDI

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Transcriptomics (1377)
Unknown (246)
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Organisms

Homo sapiens (1127)
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synthetic construct (3)
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Organisms

Arabidopsis thaliana (7)
Homo sapiens (6)
Saccharomyces cerevisiae (3)
Schizosaccharomyces pombe (2)
Torpedo suessii (1)
Acidocella aluminiidurans (1)
Liriodendron hybrid cultivar (1)
Theobroma cacao (1)
Vitis vinifera (1)
Mus musculus (1)

Repository

biostudies-arrayexpress (1472)
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geo (17)
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Tissue

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Disease

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Breast cancer (2)
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Refractory cytopenia with multilineage dysplasia and ringed sideroblasts (1)
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Invasive lobular carcinoma (1)
Giant Cell Glioblastoma (1)
Cervical carcinoma (1)
Cancer (1)
Melanoma (1)
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Technology Type

Fluorescence intensity (6)
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Illumina HiSeq 2500, ILLUMINA (2)
Illumina MiSeq (2)
Bottom-up proteomics (2)
Illumina HiSeq 2500, Illumina HiSeq 2000 (ILLUMINA), Illumina HiSeq 2000, Illumina (1)
ABI_SOLID, Illumina HiSeq 2000, Illumina 450K, AB 5500xl Genetic Analyzer, AB 5500 Genetic Analyzer, ILLUMINA (1)
Illumina HiSeq 4000, Illumina HiSeq 2500, ILLUMINA (1)
ILLUMINA, Illumina MiSeq (1)
AB 5500 Genetic Analyzer (1)
HiSeq X Ten, Illumina HiSeq 2500, ILLUMINA (1)
ILLUMINA, Illumina HiSeq 2000 (1)
Microwestern (1)
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Affinity purification coupled with mass spectrometry proteomics (1)
Chemical cross-linking coupled with mass spectrometry proteomics (1)
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HDMSE (1)

Instrument Platform

Illumina NovaSeq 6000 (52)
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None (1)
NEB Next Ultra RNA Library Prep Kit for Illumina (1)

Publication Date

2015 (188)
2013 (185)
2014 (170)
2012 (168)
2016 (129)
2010 (126)
2011 (110)
2008 (81)
2021 (58)
2009 (55)
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2018 (42)
2022 (40)
2017 (34)
2007 (33)
2020 (30)
2025 (29)
2019 (26)
2026 (9)
2006 (8)
2005 (5)
2004 (1)

UNIPROT ID/AC

A0A024R563 (2)
A0A024R8H9 (2)
A0A024RAN2 (2)
A0A024RC46 (2)
A0A087WUD1 (2)
A0A087WVZ5 (2)
A0A087WWK8 (2)
A0A087WXI0 (2)
A0A087X1S3 (2)
A0A0A0MR66 (2)
A0A0A0MS51 (2)
A0A0A0MSA7 (2)
A0A0C4DG89 (2)
A0A0C4DGT3 (2)
A0AV96 (2)
A0AVT1 (2)
A0FGR8 (2)
A0FGR8-2 (2)
A0FGR8-6 (2)
A0MZ66 (2)
A1KXE4 (2)
A1L0T0 (2)
A1X283 (2)
A2BFH1 (2)
A2RRP1 (2)
A2RTX5 (2)
A2RUC4 (2)
A3KMH1 (2)
A3KN83 (2)
A4D110 (2)

ENSEMBL ID

ENSG00000147251 (2)
ENSG00000170477 (2)
ENSG00000247315 (2)

CHEBI ID

CHEBI:26986 (4)
CHEBI:16449 (4)
CHEBI:22660 (3)
CHEBI:17234 (3)
CHEBI:24898 (3)
CHEBI:27266 (3)
CHEBI:15891 (3)
CHEBI:136239 (2)
CHEBI:136235 (2)
CHEBI:17822 (2)
CHEBI:18237 (2)
CHEBI:22653 (2)
CHEBI:27570 (2)
CHEBI:18186 (2)
CHEBI:16811 (2)
CHEBI:28300 (2)
CHEBI:16668 (2)
CHEBI:25017 (2)
CHEBI:17148 (2)
CHEBI:15741 (2)
CHEBI:17268 (2)
CHEBI:28044 (2)
CHEBI:17568 (2)
CHEBI:21547 (2)
CHEBI:17306 (2)
CHEBI:15366 (2)
CHEBI:14314 (2)
CHEBI:16027 (2)
CHEBI:78320 (2)
CHEBI:15355 (1)

Metabolite Name

Alanine (3)
Creatine (3)
Nevadensin (2)
Pro-hyp (2)
Myristoyl-l-carnitine (2)
Glu-Ala-Arg (2)
Cyhalothrin (2)
4-hydroxy-l-isoleucine (2)
3-methyl-l-histidine (2)
Lpc 18:2 (2)
DL-phenylalanine (2)
2-methylbutyryl-l-carnitine (2)
1,2-diamino-2-methylpropane (2)
Lys-Pro (2)
Pro-leu (2)
Oleoyl-l-carnitine (2)
Hexanoyl-l-carnitine (2)
5-aminovaleric acid betaine (2)
1h-indole-5-sulfonamide, n-(3-chlorophenyl)-3-[[3,5-dimethyl-4-[(4-methyl-1-piperazinyl)carbonyl]-1h-pyrrol-2-yl]methylene]-2,3-dihydro-n-methyl-2-oxo-, (3z)- (2)
1-oleoyl-sn-glycero-3-phosphocholine (2)
1-palmitoyl-2-docosahexaenoyl-sn-glycero-3-phosphocholine (2)
Gliotoxin (2)
1-palmitoyl-sn-glycero-3-phosphocholine (2)
Primaquine (2)
Thiamine monophosphate (2)
Pheniramine (2)
3-hydroxybutyrylcarnitine (2)
2-linoleoylglycerol (2)
1-heptadecanoyl-sn-glycero-3-phosphocholine (2)
3-methylhistidine (2)

First Public Date

2025 (7)
2014 (5)
2019 (4)
2017 (4)
2026 (3)
2023 (3)
2020 (3)
2022 (2)
2021 (2)
2024 (1)
2018 (1)
2015 (1)
2013 (1)

Modelling Approach

Ordinary differential equation model (2)

Lab affiliation

Center for Genetic Medicine Research (1)
Department of Biochemistry, University of Oxford, OX13QU, Oxford, United Kingdom (1)
Laboratório de Biotecnologia, Centro de Biociências e Biotecnologia Universidade Estadual do Norte Fluminense Darcy Ribeiro Av. Alberto Lamego 2000 Campos dos Goytacazes-RJ, Brazil 28013-602 (1)

IsPrivate

False (2)

Modification

15.994915 (1)
42.010565 (1)
57.021464 (1)

Study type

Transcription profiling by array (928)
RNA-seq of coding RNA (181)
ChIP-seq (74)
Comparative genomic hybridization by array (54)
Methylation profiling by array (28)
RNA-seq of coding RNA from single cells (25)
Other (22)
Unknown experiment type (20)
DNA-seq (15)
RNA-seq of non coding RNA (15)
Cell line - High-throughput sequencing (14)
Genotyping by array (13)
ChIP-chip by tiling array (8)
MicroRNA profiling by array (7)
Proteomic profiling by array (7)
ChIP-chip by array (6)
Methylation profiling by high throughput sequencing (6)
RNA-seq of total RNA (6)
Human - High-throughput sequencing (4)
Cell line - One-color microarray (4)
Cell line - Single-cell sequencing (3)
High-throughput sequencing (3)
Transcription profiling by tiling array (3)
ATAC-seq (3)
One-color microarray (2)
Human - One-color microarray (2)
Animal - High-throughput sequencing (2)
Hi-C (2)
CUT&TAG (1)
Transcription profiling by SAGE (1)

Release Date

2015 (199)
2013 (196)
2012 (175)
2014 (171)
2010 (134)
2016 (130)
2011 (116)
2008 (92)
2009 (64)
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2007 (36)
2019 (35)
2017 (31)
2025 (23)
2006 (12)
2005 (10)
2026 (9)
2003 (5)
2004 (2)
2000 (2)
1998 (2)
2002 (1)
1999 (1)
1993 (1)

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Torpedo suessii isolate:NMW 88240

Torpedo suessii isolate:NMW 88240 Genome sequencing and assembly

PRJNA1008877 | ENA

Expression data of wild-type and dcl1-15 torpedo-staged embryos

Severe loss-of-function alleles of DCL1 are embryonic lethal. Defects in cell division were seen as early as the globular stage in the strong loss-of-function allele dcl1-15. Phenotypic work with dcl1-15 and the null allele dcl1-5 suggested that, in addition to the severe patterning defects, the m...

ORGANISM(S): Arabidopsis thaliana

2011-02-17 | E-GEOD-24887 | biostudies-arrayexpress

Expanded Spectrum Torpedo Retinopathy: A Case Series.

Not available

S-EPMC10176189 | biostudies-literature

Multimodal Imaging of Choroidal Structural in Torpedo Maculopathy.

Not available

S-EPMC9996047 | biostudies-literature

Expression data of wild-type and dcl1-15 torpedo-staged embryos

ORGANISM(S): Arabidopsis thaliana

2011-02-17 | GSE24887 | GEO

Intravenous versus oral antibiotics for eradication of Pseudomonas aeruginosa in cystic fibrosis (TORPEDO-CF): a randomised controlled trial.

Not available

S-EPMC7606906 | biostudies-literature

Genomic data for Torpedo marmorata

PRJEB88649 | ENA

sTorMar1

Torpedo marmorata, genomic assembly, sTorMar1

PRJEB88667 | ENA

A unified allosteric/torpedo mechanism for transcriptional termination on human protein-coding genes

PRJNA566400 | ENA

A unified allosteric/torpedo mechanism for transcriptional termination on human protein-coding genes

The so-called allosteric and torpedo models have been used for the past thirty years to explain how transcription terminates on protein-coding genes. The former invokes conformational changes in the transcription complex and the latter involves degradation of the downstream product of poly(A) signal...

ORGANISM(S): Homo sapiens

2020-01-21 | GSE137727 | GEO

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2003 Results

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