Traces - OmicsDI

Show results for

Unknown (2692)
Transcriptomics (313)
Genomics (233)
Proteomics (208)
Metabolomics (26)
Models (4)
Clinical (3)
Other (2)
Methylation profiling (1)
Multiomics (1)

Organisms

Homo sapiens (209)
Mus musculus (108)
Saccharomyces cerevisiae (23)
Rattus norvegicus (22)
Escherichia coli (13)
Arabidopsis thaliana (11)
Aliivibrio salmonicida LFI1238 (9)
Drosophila melanogaster (8)
Danio rerio (7)
Podospora anserina (5)
Sus scrofa (5)
Schizosaccharomyces pombe (5)
Vitis vinifera (4)
Mycobacterium tuberculosis (3)
Glycine max (3)
Staphylococcus xylosus (2)
Pseudomonas chlororaphis subsp. aureofaciens 30-84 (2)
Pectobacterium wasabiae (2)
Cucumis melo (2)
Cyclopterus lumpus (2)
Alnus glutinosa (2)
Staphylococcus aureus (2)
Ovis aries (2)
Caenorhabditis elegans (2)
Candida albicans (2)
cellular organisms (1)
Scyliorhinus canicula (1)
Meloidogyne chitwoodi (1)
Actinobacillus pleuropneumoniae serovar 3 str. JL03 (1)
Corylus avellana (1)

Organisms

Homo sapiens (37)
Mus musculus (16)
Saccharomyces cerevisiae (5)
Vitis vinifera (4)
Rattus norvegicus (3)
Arabidopsis thaliana (2)
Plasmodium falciparum (2)
Danio rerio (2)
Francisella tularensis subsp. holarctica OSU18 (1)
Saccharomyces uvarum CLIB 533 (1)
Hoolock hoolock (1)
trap metagenome (1)
Cryphonectria parasitica (1)
Drosophila mauritiana (1)
Nitrosomonas europaea (1)
Anopheles coluzzii (1)
Trapezia bidentata (1)
Cereibacter sphaeroides (1)
Allium cepa (1)
Dreissena polymorpha (1)
Anopheles gambiae (1)
Mycolicibacterium smegmatis MC2 155 (1)
Desulfurivibrio nitratireducens (1)
Desulfurivibrio modestus (1)
Proteiniclasticum sp. C24MP (1)
Pseudomonas putida (1)
Schizosaccharomyces pombe (1)
Helicobacter pylori (1)
Mus musculus musculus (1)
Glycine max (1)

Repository

biostudies-arrayexpress (287)
pride (202)
ENA (202)
geo (55)
MetaboLights (25)
EGA (9)
BioModels (4)
jPOST (3)
MassIVE (2)
GNPS (1)
iProX (1)

Tissue

Cell culture (29)
Brain (12)
Blood plasma (9)
Epithelial cell (9)
Permanent cell line cell (8)
Plant cell (8)
Heart (7)
Blood (5)
Blood cell (5)
Kidney (5)
Cell suspension culture (4)
Saliva (4)
Skeletal muscle (4)
B cell (3)
Blood platelet (3)
Bone (3)
Colon (3)
Colon epithelial cell (3)
Extracellular vesicle (3)
Hepatocyte (3)
Leaf (3)
Liver (3)
Primary cell (3)
Seed (3)
Tooth enamel (3)
Whole body (3)
Cerebrospinal fluid (2)
Fibroblast (2)
Leukocyte (2)
Lung (2)

Disease

Colon cancer (9)
Normal (6)
Alzheimer's disease (4)
COVID-19 (3)
Disease free (3)
Primary tumor (2)
Porphyria NOS (2)
Parkinson's disease (2)
T. circumcincta infection (1)
Not applicable (1)
Squamous cell carcinoma has accession C0007137 in DiseaseStateDatabase NCI_Thesaurus (1)
Systemic juvenile idiopathic arthritis (1)
Type 1 Diabetes Mellitus (1)
Tuberculosis (1)
Pre diabetic (1)
Reference (1)
N/a (1)
Prostate carcinoma (1)
Collagen induced arthritis (1)
Type 1 diabetes mellitus (DM-1) (1)
Adenoma (1)
Bowel cancer (1)
Colorectal Neoplasms (1)
Acute leukemia (1)
Azoospermia (1)
Brain ischemia (1)
Brucella abortus brucellosis (1)
Brucella melitensis brucellosis (1)
Brucellosis (1)
Cardiovascular system disease (1)

Technology Type

Mass Spectrometry (202)
Shotgun proteomics (90)
Bottom-up proteomics (34)
SWATH MS (30)
Affinity purification coupled with mass spectrometry proteomics (21)
Data-dependent acquisition (19)
Mass spectrometry (17)
Gel-based experiment (15)
Data-independent acquisition (14)
Mass spectrometry assay (7)
SRM/MRM (7)
HDMSE (6)
DiaPASEF (5)
Top-down proteomics (5)
All-ion fragmentation (4)
Affinity proteomics (3)
Chemical cross-linking coupled with mass spectrometry proteomics (3)
MSE (3)
Applied Biosystems 3100 automated sequencer-GeneMarker v.1.6 (Softgenetics) (1)
Illumina 660K, Illumina 610K (1)
Illumina Genome Analyzer II (1)
Illumina HiSeq 2000 (1)
NMR spectroscopy (1)

Instrument Platform

Illumina HiSeq 2500 (14)
NextSeq 500 (7)
Liquid Chromatography MS - positive - reverse phase (6)
GenePix 4000B [Axon Instruments] (4)
Illumina NovaSeq 6000 (4)
Illumina HiSeq 2000 (4)
Illumina HiSeq 4000 (4)
Illumina MiSeq (3)
Illumina Genome Analyzer IIx (2)
Axon GenePix 4000B scanning hardware (2)
Q Exactive (2)
Exactive (Thermo Scientific) (2)
Gas Chromatography MS - positive (2)
Liquid Chromatography MS - negative - hilic (2)
Liquid Chromatography MS - negative - reverse phase (2)
Axon GenePix4000B (1)
Illumina Genome Analyzer (1)
GenePix Professional 4200A [Axon Instruments] (1)
G2565AA DNA microarray scanner [Agilent] (1)
Generation III Array Scanner [Amersham] (1)
Bioanalyser (1)
Axon- GenePix4000B (1)
NA (1)
GenePix 4000B (1)
NextSeq 550 (1)
LTQ Orbitrap Elite (1)
API 4000 QTRAP (AB Sciex) (1)
Agilent 5975E GC/MSD (Agilent) (1)
Bruker (1)
Capillary electrophoresis MS - (1)

Publication Date

2026 (50)
2020 (40)
2010 (39)
2023 (37)
2025 (36)
2015 (36)
2024 (35)
2021 (34)
2022 (33)
2014 (32)
2011 (26)
2008 (25)
2013 (24)
2019 (21)
2012 (20)
2009 (20)
2016 (18)
2018 (16)
2017 (14)
2006 (10)
2005 (6)
2007 (5)
2003 (2)
2004 (1)

CHEBI ID

CHEBI:15428 (6)
CHEBI:18186 (5)
CHEBI:25017 (5)
CHEBI:27897 (5)
CHEBI:28044 (5)
CHEBI:15366 (4)
CHEBI:15756 (4)
CHEBI:16449 (4)
CHEBI:16811 (4)
CHEBI:22653 (4)
CHEBI:24898 (4)
CHEBI:25094 (4)
CHEBI:26271 (4)
CHEBI:27266 (4)
CHEBI:28300 (4)
CHEBI:30769 (4)
CHEBI:6650 (4)
CHEBI:15354 (3)
CHEBI:15741 (3)
CHEBI:16010 (3)
CHEBI:16335 (3)
CHEBI:15858 (1)
CHEBI:16077 (1)
CHEBI:16551 (1)
CHEBI:17665 (1)
CHEBI:17925 (1)
CHEBI:18066 (1)
CHEBI:18283 (1)
CHEBI:28087 (1)
CHEBI:29223 (1)

Metabolite Name

Adenosine (5)
Adenine (4)
Cytidine (4)
Alanine (3)
Arginine (3)
Asparagine (3)
Butyric acid (3)
CDP (3)
Creatine (3)
Fructose-6-phosphate (3)
GMP (3)
Glucose (3)
Glutamine (3)
Guanine (3)
Guanosine (3)
Isoleucine (3)
Leucine (3)
Lysine (3)
Methionine (3)
Phenylalanine (3)
Taurine (3)
Threonine (3)
UMP (3)
2-Phenylethanol (2)
5-Methylcytosine (2)
ADP (2)
AMP (2)
ATP (2)
Acetic acid (2)
Allantoin (2)

First Public Date

2024 (30)
2025 (28)
2026 (26)
2020 (22)
2018 (16)
2023 (14)
2022 (14)
2013 (13)
2014 (10)
2021 (9)
2019 (8)
2015 (6)
2017 (3)
2016 (2)
2011 (1)

Modelling Approach

Ordinary differential equation model (3)

Study status

Recruiting (2)
Completed (1)

Lab affiliation

Instituto de Investigaciones Sanitarias de Santiago de Compostela (8)
Centre for Cancer Cell & Molecular Biology Barts Cancer Institute Queen Mary University of London Charterhouse Square London EC1M 6BQ U.K. (3)
Core Facility Proteomics, Department of Clinical Chemistry, University Medical Center Goettingen, Germany (3)
Imperial College London (3)
Basic Immune System of Plants / Protein Mass Spectrometry Max Planck Institute for Plant Breeding Research Carl-von-Linne-Weg 10, 50829 Cologne, Germany (2)
Biomedical Research Center, Slovak Academy of Sciences (2)
CEA-Marcoule, ProGénoMIX platform, DRF-Li2D, 30207 Bagnols-sur-Cèze, France (2)
Department of Chemistry, King’s College London, SE1 1DB, London, UK Faculty of Biology, Medicine and Health, School of Biological Sciences, The University of Manchester, M13 9PT, Manchester, UK Manchester Institute of Biotechnology, The University of Manchester, M1 7DN, Manchester, UK (2)
EDyP (2)
German Center for Neurodegenerative Diseases (DZNE) Otfried-Müller-Strasse 23 72076 Tübingen Germany (2)
Proteomics, Leibniz-Institut für analytische Wissenschaften -ISAS - e.V., Germany (2)
School of Biological Sciences, Building 85, University of Southampton, Southampton, SO17 1BJ (2)
University Medical Center Goettingen, Department of Clinical Chemistry, Core Facility Proteomics (2)
1-Institut de Génétique et de Biologie Moléculaire et Cellulaire, 67404 Illkirch, France; 2-Centre National de la Recherche Scientifique (CNRS), UMR7104, 67404 Illkirch, France; 3-Institut National de la Santé et de la Recherche Médicale (INSERM), U1258, 67404 Illkirch, France 4-Université de Strasbourg, 67404 Illkirch, France (1)
1. Bioanalytics, Institute of Biotechnology, Technische Universität Berlin, 13355 Berlin, Germany 2. Wellcome Centre for Cell Biology, School of Biological Sciences, University of Edinburgh, Edinburgh EH93BF, United Kingdom ( lab head ) (1)
Aarhus University (1)
Aging and Muscle Metabolism Lab, Department of Biomedical Sciences & Service of Endocrinology, Diabetes and Metabolism, Faculty of Biology and Medicine, Lausanne University Hospital and University of Lausanne, Bugnon 7, 1005 Lausanne, Switzerland (1)
Associate professor, Department of Biomedical laboratory sciences and chemical engineering, Bergen University College, Bergen, Norway. (1)
Bioanalytics, Department of Clinical Chemistry, University Medical Center Goettingen (1)
Biomolecular Mass Spectrometry and Proteomics, Bijvoet Center for Biomolecular Research and Utrecht Institute for Pharmaceutical Sciences, Utrecht University, Padualaan 8, 3584 CH Utrecht, The Netherlands Singapore Immunology Network (SIgN), Agency for Science, Technology and Research (A*STAR), Singapore, Singapore. Department of Pharmacy, National University of Singapore, Singapore 117543, Singapore. (1)
Biozentrum, University of Basel, Switzerland (1)
CRG, UPF (1)
CRUK Beatson Institute, Switchback Road, Glasgow G61 1BD, UK. (1)
Cancer Research UK Manchester Institute Systems Oncology (1)
Center for Integrative Genomics (CIG) University of Lausanne (UNIL) Quartier Sorge, Genopode room 3030 CH-1015 Lausanne Switzerland (1)
Charité Universitätsmedizin Berlin, Department of Biochemistry, Berlin, Germany (1)
Cologne Excellence Cluster on Cellular Stress Responses in Aging-Associated Diseases (CECAD) and Institute for Mitochondrial Diseases and Aging, Medical Faculty, University of Cologne, Cologne, Germany. (1)
Core Facility Proteomics, Department of Clinical Chemistry, Universitry Medical Center Göttingen, Germany (1)
Core Facility Proteomics, Department of Clinical Medicine, University Medical Center Goettingen, Germany (1)
Dairy Foods, AgResearch, Ruakura Research Centre (1)