Translational reprogramming

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Unknown (1814)
Genomics (409)
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Methylation profiling (3)

Organisms

Homo sapiens (162)
Mus musculus (123)
Arabidopsis thaliana (12)
Rattus norvegicus (11)
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Danio rerio (3)
Caenorhabditis elegans (3)
Leishmania donovani (2)
Escherichia coli str. K-12 substr. MG1655 (2)
Histoplasma capsulatum (2)
Oryza sativa (2)
Quercus (2)
Streptomyces coelicolor (2)
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Escherichia coli str. K-12 substr. MC4100 (1)
Vanilla planifolia (1)
Burkholderia thailandensis (1)
Rhizophagus irregularis (1)
Chlorocebus pygerythrus (1)
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Glycine max (1)
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Drosophila melanogaster (1)
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Organisms

Homo sapiens (129)
Mus musculus (112)
Rattus norvegicus (7)
Arabidopsis thaliana (7)
Saccharomyces cerevisiae (5)
Caenorhabditis elegans (3)
Danio rerio (3)
Histoplasma capsulatum (2)
Macaca mulatta (2)
Bos taurus (2)
Chlorocebus pygerythrus (1)
Escherichia coli str. K-12 substr. MC4100 (1)
Leishmania tropica (1)
Burkholderia thailandensis (1)
Vanilla planifolia (1)
Medicago truncatula (1)
Pyricularia oryzae (1)
Escherichia coli str. K-12 substr. MG1655 (1)
Mus musculus musculus (1)
Vibrio cholerae (1)
Drosophila melanogaster (1)
Leishmania donovani (1)
Glycine max (1)
Solanum lycopersicum (1)
Oryza sativa (1)
Escherichia coli (1)

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geo (261)
pride (80)
biostudies-arrayexpress (45)
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Tissue

Cell culture (27)
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Blood cell (3)
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Embryo (3)
Embryonic stem cell (3)
Leaf (3)
Permanent cell line cell (3)
B cell (2)
Blood (2)
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Plant cell (2)
Skeletal muscle (2)
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Blood platelet (1)
Blood serum (1)
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Cerebral cortex neuron (1)
Cerebrospinal fluid (1)
Culture condition:CD4+ cell (1)
Early embryonic cell (1)
Embryonic fibroblast (1)
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Esophagus (1)
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T cell (1)

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Disease free (2)
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Acute leukemia (1)
Acute promyelocytic leukemia (1)
Barrett's esophagus (1)
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Chagas disease (1)
Chronic lymphocytic leukemia (1)
Colon cancer (1)
Huntington Disease (1)
Inflammatory bowel disease (1)
Liver disease (1)
Lymphoma (1)
Non-small cell lung carcinoma (1)
Severe acute respiratory syndrome coronavirus 2 (1)
Typhoid fever (1)
Uterine cancer (1)
Wounds and Injuries (1)

Technology Type

Mass Spectrometry (80)
Shotgun proteomics (38)
Bottom-up proteomics (26)
Data-dependent acquisition (8)
Mass spectrometry (6)
Affinity purification coupled with mass spectrometry proteomics (6)
Data-independent acquisition (6)
SWATH MS (6)
Gel-based experiment (5)
Mass spectrometry assay (2)
DiaPASEF (1)
HDMSE (1)
RNA mass spectrometry (1)
SRM/MRM (1)
Top-down proteomics (1)

Instrument Platform

Q Exactive (11)
Illumina HiSeq 2500 (4)
7890A GC (Agilent, Santa Clara, CA, USA) instrument coupled to a 5975C MSD single quadrupole mass spectrometer (Agilent).Dionex Ultimate 3000 (Thermo Scientific) coupled to TSQ Quantum Ultra mass spectrometer (Thermo Scientific) (2)
Impact HD (2)
TSQ Vantage (2)
LTQ (2)
LTQ Velos (2)
Orbitrap Eclipse (2)
Liquid Chromatography MS - negative - reverse phase (2)
Liquid Chromatography MS - positive - reverse phase (2)
Infors HT Multitron shaker (1)
Illumina MiSeq (1)
Illumina NovaSeq 6000 (1)
Illumina HiSeq 2000 (1)
SYNAPT HDMS (Waters) (1)
Xevo TQ-S (1)
Xevo TQ-S (Waters) (1)
Instrument (1)
LTQ Orbitrap XL (1)
LTQ XL (1)
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Orbitrap Q Exactive / Vanquish UPLC (1)
Q Exactive HF (1)
Q Exactive HF-X (1)
Q Exactive Plus (1)
Thermo EASY-nLC 1200 (1)
TripleTOF 6600 (1)
Gas Chromatography MS - (1)
Liquid Chromatography MS - Alternating (LC-MS (Alternating)) (1)
Liquid Chromatography MS - (1)

Publication Date

2026 (110)
2025 (76)
2023 (48)
2024 (45)
2021 (30)
2022 (20)
2019 (17)
2017 (14)
2016 (14)
2015 (14)
2018 (12)
2013 (12)
2020 (11)
2014 (9)
2012 (6)
2010 (4)
2011 (2)
2005 (2)
2007 (1)
2006 (1)

UNIPROT ID/AC

1FEH1_WHEAT (1)
4565.EPlTAEP00000010002 (1)
4565.EPlTAEP00000010027 (1)
4565.EPlTAEP00000010105 (1)
4565.EPlTAEP00000010109 (1)
4565.EPlTAEP00000010115 (1)
4565.Traes_1AL_00485097A.2 (1)
4565.Traes_1AL_00744EBC6.2 (1)
4565.Traes_1AL_0121566F8.1 (1)
4565.Traes_1AL_013C8AF6B1.1 (1)
4565.Traes_1AL_014F29DA6.1 (1)
4565.Traes_1AL_015BAE72C.1 (1)
4565.Traes_1AL_01806281A.1 (1)
4565.Traes_1AL_0226AAD07.1 (1)
4565.Traes_1AL_034B63223.1 (1)
4565.Traes_1AL_036E330F0.1 (1)
4565.Traes_1AL_03D275069.1 (1)
4565.Traes_1AL_0458C8353.1 (1)
4565.Traes_1AL_04A4521BB.2 (1)
4565.Traes_1AL_04EA15F57.1 (1)
4565.Traes_1AL_051FE2815.1 (1)
4565.Traes_1AL_087978D78.1 (1)
4565.Traes_1AL_08A2F5FA4.1 (1)
4565.Traes_1AL_08A7811E1.3 (1)
4565.Traes_1AL_0912DED70.1 (1)
4565.Traes_1AL_093513BF1.1 (1)
4565.Traes_1AL_09486AD47.1 (1)
4565.Traes_1AL_0A1043127.1 (1)
4565.Traes_1AL_0A5A0E0D3.1 (1)
4565.Traes_1AL_0A7711D82.1 (1)

CHEBI ID

CHEBI:17202 (3)
CHEBI:16704 (3)
CHEBI:15996 (3)
CHEBI:17239 (3)
CHEBI:17677 (3)
CHEBI:6650 (3)
CHEBI:15713 (3)
CHEBI:17659 (3)
CHEBI:32816 (3)
CHEBI:16750 (3)
CHEBI:17552 (3)
CHEBI:17562 (3)
CHEBI:15422 (3)
CHEBI:16761 (3)
CHEBI:16335 (3)
CHEBI:17596 (3)
CHEBI:30769 (3)
CHEBI:17822 (2)
CHEBI:26271 (2)
CHEBI:17126 (2)
CHEBI:22660 (2)
CHEBI:16811 (2)
CHEBI:28300 (2)
CHEBI:16708 (2)
CHEBI:17748 (2)
CHEBI:14336 (2)
CHEBI:17754 (2)
CHEBI:18211 (2)
CHEBI:29016 (2)
CHEBI:17138 (2)

Metabolite Name

GTP (3)
UTP (3)
Uridine (3)
UDP (3)
IMP (3)
Guanosine (3)
CTP (3)
ATP (3)
ADP (3)
GDP (3)
CDP (3)
Dihydroxyacetone phosphate (2)
Propionyl-CoA (2)
N-carbamoyl-L-aspartic acid (2)
Histidine (2)
Leucine (2)
Phosphocholine (2)
Inosine (2)
Hypoxanthine (2)
Cytidine (2)
CDP-choline (2)
Carnitine (2)
Adenosine (2)
Glycerol (2)
Valine (2)
Citrulline (2)
Carnosine (2)
Butyric acid (2)
Ornithine (2)
Eicosapentaenoic acid (2)

First Public Date

2026 (111)
2025 (59)
2023 (34)
2024 (33)
2022 (20)
2021 (18)
2019 (14)
2015 (11)
2018 (10)
2017 (10)
2014 (10)
2020 (8)
2016 (4)
2013 (2)

Classification

bacteria (5)
fungi (2)
protozoa (2)

Modification

N6 (2)
N6-dimethyl-L-lysine (1)

Study type

Transcription profiling by array (16)
RNA-seq of coding RNA (14)
ChIP-seq (3)
RNA-seq of non coding RNA (3)
Ribo-seq (2)
Methylation profiling by array (2)
RNA-seq of total RNA (2)
ChIP-chip by tiling array (1)
RIP-seq (1)
Other (1)

Release Date

2025 (357)
2023 (221)
2024 (209)
2022 (199)
2021 (162)
2020 (127)
2018 (92)
2019 (85)
2015 (77)
2017 (75)
2026 (72)
2016 (62)
2014 (51)
2013 (27)
2012 (15)
2010 (11)
2011 (7)
2005 (3)
2009 (3)
2007 (2)
2006 (2)

Lab affiliation

European Institute of Oncology (2)
Head of the Curie Institute Mass Spectrometry Platform (2)
Hong Kong University of Science and Technology (2)
Proteomics program, Novo Nordisk Foundation Center for Protein Research, Faculty of Health and Medical Sciences, University of Copenhagen, 2200 Copenhagen, Denmark (2)
AG Joachim Kopka Max-Planck-Institut für Molekulare Pflanzenphysiologie Wissenschaftspark Golm Am Mühlenberg 1 14476 Potsdam, Germany (1)
Analytics Core Facility Essen (ACE), Chemische Biologie, Universität Duisburg-Essen, ZMB, Germany (1)
Ben May Department for Cancer Research, The University of Chicago, Chicago, IL, 60637, USA (1)
Biochemistry and Cell Signalling in Nitric Oxide Group Area of Biochemistry and Molecular Biology. Department of Experimental Biology. University of Jaén /University Institute for Research in Olive Oil and Olive Oils (Spain) (1)
Biological Mass Spectrometry Lab, Department of Translational Medicine (DiMeT),Center for Translational Research on Autoimmune & Allergic Diseases - CAAD, University of Piemonte Orientale Corso Trieste 15/A, 28100, Novara, Italy. (1)
CNRS UPR9002 (ARN), Institut de Biologie Moléculaire et Cellulaire, Université de Strasbourg, Strasbourg 67000, France. (1)
Cambridge Stem Cell Institute, Cambridge, United Kingdom, CB2 0AW (1)
Cell Signalling & Immunology, School of Life Sciences, University of Dundee (1)
Cell and Regenerative Biology, University of Wisconsin-Madison (1)
Center for Research Innovation and Bioinformatics, Faculty of Medical Technology, Mahidol University, Nakhon Pathom, Thailand (1)
Center for Translational Research and Molecular Biology of Cancer Maria Sklodowska-Curie National Research Institute of Oncology, Gliwice Branch 44-102 Gliwice, ul. Wybrzeże Armii Krajowej 15, Poland (1)
Department of Biological Engineering, Massachusetts Institute of Technology, Cambridge, MA 02139 USA Singapore-MIT Alliance for Research and Technology Antimicrobial Resistance Interdisciplinary Research Group, Singapore 138602 (1)
Department of Biology, Duke University, USA (1)
Department of General Surgery, Key Laboratory of Hepatosplenic Surgery, Ministry of Education, The First Affiliated Hospital of Harbin Medical University, Harbin 150001, China. Anhui Province Key Laboratory of Hepatopancreatobiliary Surgery, Hefei, Anhui, 230001, China. Anhui Provincial Clinical Research Center for Hepatobiliary Diseases, Hefei, Anhui, 230001, China. (1)
Department of Inflammation and Immunity, Gastroenterology and Hepatology. Cleveland Clinic, Cleveland Ohio (1)
Department of Medicine III and IZKF, University Hospital Aachen, Aachen, Germany (1)
Department of Molecular Genetics and Cell Biology and Ludwig Center for Metastasis Research, The University of Chicago, Chicago IL (1)
Department of Neurology, University of Pittsburgh Medical Center, Pittsburgh, PA, USA (1)
Department of Oncology-Pathology, Karolinska Institutet and Science for Life Laboratory (1)
Department of Parasitology, Institute of Biomedical Sciences, University of Sao Paulo, Avenida Lineu Prestes 1374, Room 9, Butanta, Sao Paulo (1)
Department of Pharmacy, University of Salerno, 84084 Fisciano, Italy; Dept. Pharmacy, University of Naples 'Federico II', ViaTommaso De Amicis 95, 80131 Naples, Italy (1)
Department of Urology, Miller School of Medicine, University of Miami, Miami, FL 33136, USA (1)
Department of Urology, SUNY Upstate Medical University (1)
Dept of Experimental Medical Science, Wallenberg Neuroscience Center, Lund University, Sweden (1)
Deutsches Herzzentrum der Charité – Medical Heart Center of Charité and German Heart Institute Berlin, Department of Cardiothoracic and Vascular Surgery, 13353 Berlin, Germany (1)
Division of Life Science, Center for Stem Cell Research, Center of Systems Biology and Human Health, State Key Laboratory in Molecular Neuroscience, Molecular Neuroscience Center, Hong Kong University of Science and Technology, Clear Water Bay, Kowloon, Hong Kong, China. Guangdong Provincial Key Laboratory of Brain Science, Disease and Drug Development, HKUST Shenzhen Research Institute, Shenzhen-Hong Kong Institute of Brain Science, 518057, Shenzhen, Guangdong, China. (1)

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Epigenetic coordination of transcriptional and translational programs in hypoxia

Adaptation to cellular stresses entails an incompletely understood coordination of transcriptional and post-transcriptional gene regulation. Here, we quantified hypoxia-dependent transcriptomes, epigenomes and translatomes in T47D breast cancer cells and H9 human embryonic stem cells. This reveal...

2025-06-09 | MTBLS12086 | MetaboLights

Virus-induced codon-specific reprogramming to favor viral RNA translation

Recent evidence indicates that codon usage bias regulates gene expression. How viruses, such as the emerging mosquito-borne Chikungunya virus (CHIKV), express their genomes at high levels despite an enrichment in rare codons remains a puzzling question. Using ribosome footprinting, here we analysed ...

2025-06-16 | MTBLS2443 | MetaboLights

KLF16 enhances stress tolerance of colorectal carcinomas by modulating nucleolar homeostasis and translational reprogramming

Translational reprogramming is part of the unfolded protein response (UPR) during endoplasmic reticulum (ER) stress, which acts to the advantage of cancer growth and development in different stress conditions. But the mechanism of ER stress-related translational reprogramming in colorectal carcinoma...

ORGANISM(S): Homo Sapiens

2022-05-16 | PXD033930 |

Translational reprogramming of dentate gyrus peptidergic circuitry gates antidepressant efficacy

PRJNA1336863 | ENA

Metabolic reprogramming in the airway epithelium of high risk individuals

We investigated proteins identified by shotgun proteomics in cytologically normal airway epithelial cells from individuals at different levels of risk for lung cancer. We identified 2869 proteins in bronchial brushings from individuals at low, moderate or high risk for lung cancer. Pathway analysis ...

ORGANISM(S): Homo Sapiens (ncbitaxon:9606)

MSV000079331 | MassIVE

Translational reprogramming during epithelial-mesenchymal transition is associated with fine-tuning of ribosome composition

PRJNA1032593 | ENA

Translational Reprogramming as a Driver of Antimony-drug Resistance in Leishmania

PRJNA727294 | ENA

Fluctuations in histone H4 isoforms during cellular reprogramming monitored by middle-down proteomics

Cellular reprogramming remodels the gene expression program by re-setting the epigenome of somatic cells into an embryonic-like state. Post-translational modifications of histones play an important role in this process. We previously used ChIP-seq to profile the distribution of specific histone H3 m...

ORGANISM(S): Mus musculus (Mouse)

2015-08-17 | PXD002062 | Pride

Aminoglycoside tolerance in Vibrio cholerae engages translational reprogramming associated to queuosine tRNA modification

PRJNA962989 | ENA

Translational reprogramming in tumour cells can generate oncoselectivity in viral therapies.

Not available

S-EPMC5357308 | biostudies-literature

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