Tripathi R R - OmicsDI

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Unknown (929)
Transcriptomics (43)
Proteomics (22)
Metabolomics (5)
Genomics (3)

Organisms

Homo sapiens (41)
Mus musculus (16)
Oryza sativa Indica Group (2)
Arabidopsis thaliana (2)
Leishmania major (1)
Rattus norvegicus (1)
Plasmodium falciparum (1)

Organisms

soil metagenome (1)
Arabidopsis thaliana (1)

Repository

biostudies-arrayexpress (43)
pride (19)
MetaboLights (4)
PAXDB (2)
ENA (2)
geo (1)
GNPS (1)
MassIVE (1)

Tissue

Cell culture (3)
Brain (2)
Early embryonic cell (2)
Kidney (2)
T cell (2)
Blood (1)
Breast (1)
Cerebrospinal fluid (1)
Embryonic stem cell (1)
Epithelial cell (1)
Erythrocyte (1)
Fibroblast (1)
MDA-MB-231 cell (1)
Mammary gland (1)
Nasal cavity (1)
Permanent cell line cell (1)
Primary cell (1)
Smooth muscle (1)

Disease

Disease free (2)
Abnormal breast morphology (1)
Amyotrophic lateral sclerosis (1)
Breast cancer (1)
COVID-19 (1)
Colon cancer (1)
Frontotemporal dementia (1)
Hydrocephalus (1)
Multiple sclerosis (1)
Neuroblastoma (1)
Plasmodium falciparum malaria (1)

Technology Type

Mass Spectrometry (19)
Shotgun proteomics (12)
Mass spectrometry (4)
Affinity purification coupled with mass spectrometry proteomics (3)
Bottom-up proteomics (3)
Data-dependent acquisition (3)
Gel-based experiment (1)
SRM/MRM (1)

Instrument Platform

Liquid Chromatography MS - positive - reverse phase (4)
Liquid Chromatography MS - negative - reverse phase (2)
Liquid Chromatography MS - positive - hilic (2)
Ion Chef™ System and Ion S5™ System or Ion GeneStudio™ S5 Systems. (1)
Ion Torrent S5 XL (1)
NextSeq 500 (1)
MaXis (1)
6545 Q-TOF LC/MS (1)
Liquid Chromatography MS - negative - hilic (1)

Publication Date

2014 (11)
2015 (8)
2012 (7)
2021 (6)
2010 (6)
2022 (5)
2025 (5)
2009 (4)
2018 (3)
2020 (2)
2017 (2)
2016 (2)
2013 (2)
2024 (2)
2019 (2)
2011 (1)
2008 (1)
2023 (1)
2026 (1)

UNIPROT ID/AC

5833.MAL13P1.267 (2)
5833.MAL13P1.269 (2)
5833.MAL13P1.325 (2)
5833.MAL13P1.334 (2)
5833.MAL7P1.78 (2)
5833.MAL8P1.208 (2)
5833.MAL8P1.320 (2)
5833.PF11_0033 (2)
5833.PF11_0263 (2)
5833.PF11_0512 (2)
5833.PF13_0305 (2)
5833.PF13_0321 (2)
5833.PF14_0001 (2)
5833.PF14_0009 (2)
5833.PF14_0173 (2)
5833.PF14_0734 (2)
5833.PF14_0751 (2)
5833.PF14_0756 (2)
5833.PF14_0759 (2)
5833.PFA0105w (2)
5833.PFA0120c (2)
5833.PFA0705c (2)
5833.PFB0050c (2)
5833.PFB0280w (2)
5833.PFB0925w (2)
5833.PFB0946c (2)
5833.PFC1011c (2)
5833.PFC1075w (2)
5833.PFD0075w (2)
5833.PFD0100c (2)

CHEBI ID

CHEBI:15891 (3)
CHEBI:16964 (3)
CHEBI:171896 (3)
CHEBI:17561 (3)
CHEBI:27732 (3)
CHEBI:116314 (2)
CHEBI:12936 (2)
CHEBI:133185 (2)
CHEBI:137889 (2)
CHEBI:138533 (2)
CHEBI:139582 (2)
CHEBI:15354 (2)
CHEBI:15355 (2)
CHEBI:15414 (2)
CHEBI:15545 (2)
CHEBI:15558 (2)
CHEBI:15724 (2)
CHEBI:15727 (2)
CHEBI:15729 (2)
CHEBI:15732 (2)
CHEBI:15760 (2)
CHEBI:15889 (2)
CHEBI:15971 (2)
CHEBI:15978 (2)
CHEBI:16015 (2)
CHEBI:16020 (2)
CHEBI:16026 (2)
CHEBI:16153 (2)
CHEBI:16176 (2)
CHEBI:16217 (2)

Metabolite Name

(1'S,2R,2'R,10'S,11'S,15'S)-17'-hydroxy-2',15'-dimethylspiro[oxolane-2,14'-tetracyclo[8.7.0.0²,⁷.0¹¹,¹⁵]heptadecane]-6',8'-diene-5,5'-dione (1)
(1-{1-[(4-hydroxy-3-methoxyphenyl)methyl]-7,8-dimethoxy-2,2-dimethyl-1,2,3,4-tetrahydro-2λ⁵-isoquinolin-2-yl}ethylidene)-λ⁴-oxidanyliumyl (1)
(10,14a-dihydroxy-2,2,4a,6a,6b,9,9,12a-octamethyl-docosahydropicen-13-yl)oxidanesulfonic acid (1)
(10S,14S)-10,14,20-trimethyl-16-methylidene-22-azahexacyclo[12.10.0.0²,¹¹.0⁵,¹⁰.0¹⁵,²³.0¹⁷,²²]tetracosan-5-ylium-7-olate (1)
(12aR)-4-(dimethylamino)-4a,5,10,12a-tetrahydroxy-6-methylidene-1,2,3,4,4a,5,5a,6,11,11a,12,12a-dodecahydrotetracene-1,3,11,12-tetrone (1)
(12aR)-7-chloro-4-(dimethylamino)-4,6,10,12a-tetrahydroxy-1,2,3,4,4a,5,5a,6,11,11a,12,12a-dodecahydrotetracene-1,3,11,12-tetrone (1)
(12aS)-4,7-bis(dimethylamino)-10,12,12a-trihydroxy-1,3,11-trioxo-9-(2-oxoacetamido)-1,2,3,4,4a,5,5a,6,11,11a,12,12a-dodecahydrotetracene-2-carboximidic acid (1)
(12aS)-9-{[2-(tert-butylamino)-1-hydroxyethylidene]amino}-4,7-bis(dimethylamino)-5,10,12,12a-tetrahydroxy-1,3,11-trioxo-1,2,3,4,4a,5,5a,6,11,12a-decahydrotetracene-2-carboximidic acid (1)
(13-{[5-(acetyloxy)-3,4-dihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}-1,6,6,11,15-pentamethyl-14-(6-methylhept-5-en-2-yl)-5-[(3,4,5-trihydroxyoxan-2-yl)oxy]tetracyclo[8.7.0.0²,⁷.0¹¹,¹⁵]heptadec-7-en-9-yl)oxidanesulfonic acid (1)
(13R)-5-(3,4-dihydroxyphenyl)-6,9,17,19,21-pentahydroxy-13-(4-hydroxyphenyl)-4,12,14-trioxapentacyclo[11.7.1.0²,¹¹.0³,⁸.0¹⁵,²⁰]henicosa-2(11),3(8),5,9,15,17,19-heptaen-7-one (1)
(15Z)-Octadec-15-en-9,11,13-triynoic acid (1)
(1R)-1,4-bis({[(2E)-3-(3,4-dihydroxyphenyl)prop-2-enoyl]oxy})-3-hydroxy-5-(sulfooxy)cyclohexane-1-carboxylic acid (1)
(1R,16Z,24E,26E,28Z)-1,18,26,27-tetrahydroxy-19,30-dimethoxy-12-[1-(3-methoxy-4-oxocyclohexyl)propan-2-yl]-15,17,21,23,29,35-hexamethyl-11,36-dioxa-4-azatricyclo[30.3.1.0⁴,⁹]hexatriaconta-16,24,26,28-tetraene-2,3,10,14,20-pentone (1)
(1R,16Z,24E,26E,28Z)-1,18-dihydroxy-12-[1-(4-hydroxy-3-methoxycyclohexyl)propan-2-yl]-19,30-dimethoxy-15,17,21,23,29-pentamethyl-35-methylidene-11,36-dioxa-4-azatricyclo[30.3.1.0⁴,⁹]hexatriaconta-16,24,26,28-tetraene-2,3,10,14,20-pentone (1)
(1R,2R,3R,11S,12S,14R,26R)-5,6',7',12-tetrahydroxy-6-methoxy-7,21,30-trimethyl-27-oxo-3',4'-dihydro-2'H-17,19,28-trioxa-24-thia-13,30-diazaspiro[heptacyclo[12.9.6.1³,¹¹.0²,¹³.0⁴,⁹.0¹⁵,²³.0¹⁶,²⁰]triacontane-26,1'-isoquinoline]-4(9),5,7,15(23),16(20),21-hexaen-22-yl acetate (1)
(1R,2S,3R,4R,5S,6R,7S)-1,3,4,5,7,8,9,10,10-Nonachlorotricyclo[5.2.1.0²,⁶]dec-8-ene (1)
(1R,6S,12R,15S)-5,5-Dimethyl-11,13-dioxatetracyclo[7.5.1.0¹,⁶.0¹²,¹⁵]pentadec-8-ene (1)
(1R,9S,18Z,24R)-12-[1-(4-chloro-3-hydroxycyclohexyl)prop-1-en-2-yl]-17-ethyl-1,14-dihydroxy-23,25-dimethoxy-13,19,21,27-tetramethyl-11,28-dioxa-4-azatricyclo[22.3.1.0⁴,⁹]octacos-18-ene-2,3,10,16-tetrone (1)
(1R,9S,18Z,24R)-12-[1-(4-chloro-3-methoxycyclohexyl)prop-1-en-2-yl]-17-ethyl-1,14-dihydroxy-13-(hydroxymethyl)-23,25-dimethoxy-19,21,27-trimethyl-11,28-dioxa-4-azatricyclo[22.3.1.0⁴,⁹]octacos-18-ene-2,3,10,16-tetrone (1)
(1S)-1,3,4-trihydroxy-5-(sulfooxy)cyclohexane-1-carboxylic acid (1)
(1S,16Z,24E,26E,28Z)-1,18-dihydroxy-12-{1-[4-(2-hydroxyethoxy)-3-methoxycyclohexyl]propan-2-yl}-15-(hydroxymethyl)-19,30-dimethoxy-17,21,23,29,35-pentamethyl-11,36-dioxa-4-azatricyclo[30.3.1.0⁴,⁹]hexatriaconta-16,24,26,28-tetraene-2,3,10,14,20-pentone (1)
(1S,16Z,24E,26E,28Z)-1,18-dihydroxy-12-{1-[4-(2-hydroxyethoxy)-5-methoxy-2-oxocyclohexyl]propan-2-yl}-19,30-dimethoxy-15,17,21,23,29,35-hexamethyl-11,36-dioxa-4-azatricyclo[30.3.1.0⁴,⁹]hexatriaconta-16,24,26,28-tetraene-2,3,10,14,20-pentone (1)
(1S,2R,10S,11S,14R,15R)-2,15-Dimethyl-14-[(2R)-6-methylheptan-2-yl]tetracyclo[8.7.0.0²,⁷.0¹¹,¹⁵]heptadec-7-ene (1)
(1S,2S,10S,11S,15R)-14-(5,6-dimethylheptan-2-yl)-2,15-dimethyltetracyclo[8.7.0.0²,⁷.0¹¹,¹⁵]heptadecane-5,17-diol (1)
(1S,2S,5R,7R,10S,11S,14R,15S,17S)-14-[(1R)-1,2-Dihydroxyethyl]-2,15-dimethyltetracyclo[8.7.0.0²,⁷.0¹¹,¹⁵]heptadecane-5,14,17-triol (1)
(1S,2S,5S,10R,11S,14R,15R)-14-[(2R,5R)-5-Ethyl-6-methylheptan-2-yl]-2,15-dimethyltetracyclo[8.7.0.0²,⁷.0¹¹,¹⁵]heptadecan-5-ol (1)
(1S,2S,7S,10R,15R)-2,15-dimethyl-14-(1,4,6-trihydroxy-6-methylheptan-2-yl)tetracyclo[8.7.0.0²,⁷.0¹¹,¹⁵]heptadecane-5,9,16-triol (1)
(1S,5R,13R,17S)-15-[(1S,3S,5R,13R)-10,14-Dimethoxy-4-methyl-12-oxa-4-azapentacyclo[9.6.1.0¹,¹³.0⁵,¹⁷.0⁷,¹⁸]octadeca-7(18),8,10,14,16-pentaen-3-yl]-17-hydroxy-10-methoxy-4-methyl-12-oxa-4-azapentacyclo[9.6.1.0¹,¹³.0⁵,¹⁷.0⁷,¹⁸]octadeca-7(18),8,10,15-tetraen-14-one (1)
(2-Aminoethoxy)[(2R)-2-[(1Z,9Z)-octadeca-1,9-dien-1-yloxy]-3-[(6Z,9Z,12Z,15Z)-octadeca-6,9,12,15-tetraenoyloxy]propoxy]phosphinic acid (1)
(2-Aminoethoxy)[(2R)-2-[(5Z,8Z,11Z)-icosa-5,8,11-trienoyloxy]-3-[(9Z)-octadeca-1,9-dien-1-yloxy]propoxy]phosphinic acid (1)

First Public Date

2018 (1)
2016 (1)

Study type

Transcription profiling by array (27)
RNA-seq of coding RNA (8)
Other (2)
RNA-seq of non coding RNA (2)
Animal - High-throughput sequencing (1)
Comparative genomic hybridization by array (1)
ChIP-seq (1)
Methylation profiling by array (1)

Release Date

2022 (124)
2021 (103)
2025 (102)
2023 (97)
2024 (91)
2020 (72)
2019 (57)
2018 (56)
2017 (51)
2015 (48)
2016 (39)
2014 (34)
2013 (20)
2012 (20)
2011 (13)
2010 (12)
2026 (11)
2009 (9)
2008 (7)
2006 (3)
2007 (1)
2005 (1)
2004 (1)

Lab affiliation

ATLAS Lab, Turku Centre for Biotechnology, University of Turku and Åbo Akademi, Turku, Finland (1)
Associate Professor, Department of biotechnology and research, Sir Ganga ram hospital, New Delhi -110060, Delhi, India (1)
Cardeza Center for Vascular Biology Sidney Kimmel Medical College Thomas Jefferson University (1)
Chief Scientist, Professor and Head, Cancer Biology Division CSIR-Central Drug Research Institute & AcSIR, LSS-006 Jankipuram Extension, Lucknow 226031, India (1)
Children's Hospital of Philadelphia Division of Oncology and Center for Childhood Cancer Research USA (1)
Department Chair • MCG - Department of Cellular Biology & Anatomy, Augusta University (1)
Department of Anatomy and Developmental Biology, Australian Regenerative Medicine Institute, Monash University, Australia (1)
Department of Biology, IISER Pune (1)
Department of Biotechnology, Jožef Stefan Institute, Ljubljana, Slovenia (1)
Department of Endocrinology PGIMER, Chandigarh India Dr. Akhilesh Pandey Department of Laboratory Medicine and Pathology Mayo Clinic Rochester, MN (1)
Department of Neurosciences, Lerner Research Institute, Cleveland Clinic (1)
Johns Hopkins Bloomberg School of Public Health (1)
National Institute of Immunology, New Delhi, India (1)
Obesity and Metabolism Laboratory, The Institute for Drug Research, School of Pharmacy, Faculty of Medicine, The Hebrew University of Jerusalem, Israel. (1)
Professor, Department of Biochemistry, Faculty of Medicine and Dentistry, University of Alberta, Edmonton, Alberta, Canada (1)
Professor, Department of Biological Sciences, Birla Institute of Technology & Science, Pilani- 333031, Rajasthan. India. (1)
The University of Texas MD Anderson Cancer Center Director, Red & Charline McCombs Institute for the Early Detection and Treatment of Cancer Co-Director, Center for Global Cancer Early Detection Evelyn & Sol Rubenstein Distinguished Chair for Cancer Prevention Professor, Clinical Cancer Prevention-Research Professor, Translational Molecular Pathology (1)
Turku Bioscience, University of Turku and Åbo Akademi University (1)
Vice President Principal Scientist Ayass BioScience LLC (1)

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TERRA-LSD1 phase separation promotes R-loop formation for telomere maintenance in ALT cancer cells.

Not available

S-EPMC10925046 | biostudies-literature

DNA supercoiling-mediated G4/R-loop formation tunes transcription by controlling the access of RNA polymerase.

Not available

S-EPMC11982182 | biostudies-literature

A polyamine-centric blood-based metabolite panel predictive of poor response to CAR T-cell therapy in large B cell lymphoma

Anti-CD19 chimeric antigen receptor (CAR) T-cell therapy for relapsed or refractory (r/r) large B-cell lymphoma (LBCL) results in durable response in only a subset of patients. MYC overexpression in LBCL tumors is associated with poor response to treatment. We tested whether a MYC-driven polyamin...

2022-10-31 | MTBLS5381 | MetaboLights

Surgical Outcomes and Patient Satisfaction With the Low-Cost, Semi-Rigid Shah Penile Prosthesis: A boon to the Developing Countries.

Not available

S-EPMC8360909 | biostudies-literature

Interactome Analysis of EZH2 Protein in Control and GSNO exposed Human Umbilical Vein Endothelial Cells

We wanted to explore the comprehensive interacting partners of EZH2 upon S-nitrosylation to understand the effect of such post-translational modifications. Mass spectrometric analysis revealed the comprehensive association map of EZH2 in control and GSNO-treated cells. Samples are labeled as CHIMS (...

ORGANISM(S): Homo sapiens (Human)

2025-03-13 | PXD050209 | Pride

Expression profiles of Arabidopsis thaliana Col-0 seedlings and seedlings of a mutant impaired in cytoplasmic calcium elevation in response to cellotriose treatment (Johnson et al., 2017)

The endophytic fungus Piriformospora indica is a member of Sebacinales. It colonizes the roots of many plant species including the model plant Arabidospis thaliana (Peskan-Berghofer et al. 2004). P. indica promotes plant growth (Peskan-Berghofer et al. 2004), seed production (Shahollari et al. 2007)...

ORGANISM(S): Arabidopsis thaliana

2018-02-09 | GSE98880 | GEO

Expression of defense-related genes in mung bean varieties in response to Trichoderma virens alone and in the presence of Rhizoctonia solani infection.

Not available

S-EPMC6163109 | biostudies-literature

Depressed Corin Levels Indicate Early Systolic Dysfunction Before Increases of Atrial Natriuretic Peptide/B-Type Natriuretic Peptide and Heart Failure Development.

Not available

S-EPMC4790413 | biostudies-literature

Fatty acid oxidation protects cancer cells from apoptosis through increasing mitochondrial membrane lipids

Overcoming resistance to chemotherapies remains a major unmet need for cancers such as triple negative breast cancer (TNBC). Therefore, mechanistic studies to provide insight for drug development are urgently needed to overcome TNBC therapy resistance. Recently, an important role of fatty acid β-...

2022-05-31 | MTBLS4709 | MetaboLights

soil metagenome

Long term fertilizer experiment NRRI Cuttack

PRJNA320453 | ENA

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