Tseng C C - OmicsDI

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Unknown (1044)
Transcriptomics (71)
Proteomics (27)
Genomics (9)
Metabolomics (7)
Models (2)

Organisms

Homo sapiens (55)
Mus musculus (33)
Saccharomyces cerevisiae (4)
Zea mays (3)
Rattus norvegicus (3)
Arabidopsis thaliana (2)
Neurospora crassa (1)
Sorghum bicolor (1)
Caenorhabditis elegans (1)
Drosophila melanogaster (1)
Rattus rattus (1)
Severe acute respiratory syndrome coronavirus 2 (1)

Organisms

Homo sapiens (1)
Rattus norvegicus (1)
Mus musculus (1)

Repository

biostudies-arrayexpress (74)
pride (26)
MetaboLights (7)
ENA (4)
BioModels (2)
geo (2)
MassIVE (1)

Tissue

Cell culture (7)
Epithelial cell (4)
Lung (3)
Blood platelet (2)
Brown adipose tissue (2)
Platelet (2)
B cell (1)
Brain (1)
Brown preadipocyte (1)
Fibroblast (1)
Heart (1)
Kidney (1)
Liver (1)
Nucleus accumbens (1)
Preadipocyte (1)
Root (1)
Stomach (1)
U2-OS cell (1)
White adipose tissue (1)

Disease

COVID-19 (2)
Diabetes mellitus (1)
Axonal neuropathy (1)
Cardiovascular system disease (1)
Influenza (1)
Type 2 diabetes mellitus (1)

Technology Type

Mass Spectrometry (26)
Shotgun proteomics (12)
Mass spectrometry (7)
Bottom-up proteomics (6)
Affinity purification coupled with mass spectrometry proteomics (4)
Gel-based experiment (3)
SWATH MS (2)
Data-dependent acquisition (1)
Top-down proteomics (1)

Instrument Platform

Illumina HiSeq 2500 (2)
Exactive (Thermo Scientific) (2)
Liquid Chromatography MS - Negative (LC-MS (Negative)) (2)
Liquid Chromatography MS - Positive (LC-MS (Positive)) (2)
Liquid Chromatography Tandem MS (LC-MS/MS) (2)
Sequel (1)
Illumina HiSeq 2000 (1)
NextSeq 500 (1)
Q Exactive HF (1)
Apex-ultra hybrid Qq-FTMS (Bruker) (1)
GC-TOF-MS (1)
Liquid Chromatography MS - negative - reverse phase (1)
Liquid Chromatography MS - positive - reverse phase (1)

Publication Date

2014 (17)
2015 (10)
2022 (10)
2013 (9)
2012 (9)
2011 (9)
2016 (7)
2020 (5)
2023 (5)
2024 (4)
2010 (4)
2009 (4)
2007 (4)
2018 (2)
2005 (2)
2019 (2)
2026 (2)
2021 (2)
2008 (1)
2004 (1)
2017 (1)
2025 (1)

UNIPROT ID/AC

P19970 (1)
P78714 (1)
Q01371 (1)

CHEBI ID

CHEBI:10698 (1)
CHEBI:10983 (1)
CHEBI:10986 (1)
CHEBI:109895 (1)
CHEBI:111762 (1)
CHEBI:1148 (1)
CHEBI:1156 (1)
CHEBI:11805 (1)
CHEBI:11851 (1)
CHEBI:1189 (1)
CHEBI:11892 (1)
CHEBI:11951 (1)
CHEBI:12427 (1)
CHEBI:12876 (1)
CHEBI:128769 (1)
CHEBI:12936 (1)
CHEBI:12947 (1)
CHEBI:1296 (1)
CHEBI:12962 (1)
CHEBI:13115 (1)
CHEBI:13534 (1)
CHEBI:13705 (1)
CHEBI:144365 (1)
CHEBI:1463 (1)
CHEBI:14649 (1)
CHEBI:15035 (1)
CHEBI:15075 (1)
CHEBI:15076 (1)
CHEBI:15343 (1)
CHEBI:15347 (1)

Metabolite Name

2-Piperidinecarboxylic acid, 1-(trimethylsilyl)-, trimethylsilyl ester (3)
Adenosine (3)
Alpha-D-Mannopyranose, 1,2,3,4,6-pentakis-O-(trimethylsilyl)- (3)
Butanoic acid, 2,4-bis[(trimethylsilyl)oxy]-, trimethylsilyl ester (3)
L-Aspartic acid, N-(trimethylsilyl)-, bis(trimethylsilyl) ester (3)
L-Isoleucine, N-(trimethylsilyl)-, trimethylsilyl ester (3)
Leucine (3)
N,O-Bis-(trimethylsilyl)-2-pyrrolidone carboxylic acid (3)
Octadecanoic acid (3)
Pentadecane (3)
Phenylalanine (3)
Phosphoric acid, bis(trimethylsilyl) 2,3-bis[(trimethylsilyl)oxy]propyl ester (3)
Pyridine, 3-trimethylsiloxy- (3)
Silanamine, 1,1,1-trimethyl-N-(trimethylsilyl)-N-[2-[(trimethylsilyl)oxy]ethyl]- (3)
Silanamine, N-[2-[3,4-bis[(trimethylsilyl)oxy]phenyl]ethyl]-1,1,1-trimethyl-N-(trimethylsilyl)- (3)
Sucrose (3)
Trehalose (3)
Trimethylsilyl ether of glycerol (3)
Tryptophan (3)
Uracil (3)
2'-O-Methylodoratol (2)
4-(Trimethylsilyl)morpholine (2)
4-aminobutyric acid (2)
5'-Methylthioadenosine (2)
5-HETE (2)
Adenine (2)
Alanine (2)
Arabinofuranose, 1,2,3,5-tetrakis-O-(trimethylsilyl)- (2)
Aspartic acid (2)
Butrin (2)

First Public Date

2014 (2)
2018 (1)
2013 (1)

Modelling Approach

Constraint-based model (1)
Metabolic network (1)
Ordinary differential equation model (1)

Lab affiliation

Associate Professor, Department of Neurology, UNC-Chapel Hill (1)
Biomolecular mass spectrometry and proteomics group, Utrecht University (1)
Boston University (1)
Brigham and Women's Hospital Boston, MA 02115, USA (1)
Center for Proteomics & Artificial Intelligence Center for Clinical Mass Spectrometry Allegheny Health Network Cancer Institute 100 S Jackson Ave., Pittsburgh, PA 15202 (1)
Department of Agricultural Chemistry, National Taiwan University, Taipei, Taiwan (1)
Department of Cancer Biology, Dana-Farber Cancer Institute, Boston, MA, USA. Department of Cell Biology, Harvard Medical School, Boston, MA, USA. (1)
Department of Medical Biotechnology and Laboratory Science, Chang Gung University, Taiwan, Republic of China (1)
Department of Medical Biotechnology and Laboratory Science, College of Medicine, Chang Gung University, Taoyuan, Taiwan, ROC (1)
Department of Metabolic Medicine, Faculty of Life Sciences, Kumamoto University, 1-1-1 Honjo, Chuoku, Kumamoto 860-8556, Japan (1)
Department of Metabolic Medicine, Faculuty of Life Sciences, Kumamoto University, 1-1-1 Honjo, Chuoku, Kumamoto 860-8556, Japan (1)
Department of Molecular and Medical Pharmacology, University of California, Los Angeles, CA 90095, USA (1)
Department of Neurology, University of Michigan, Ann Arbor, MI 48109, USA (1)
Department of Radiation Oncology, School of Medicine and the Winship Cancer Institute, Emory University (1)
Institute of Biological Chemistry, Academia Sinica (1)
Institute of Chemistry (1)
Institute of Chemistry, Academia Sinica (1)
Institute of molecular and cellular biology (1)
Keck MS & Proteomics Resource Yale School of Medicine (1)
Molecular and Applied Microbiology, Leibniz Institute for Natural Product Research and Infection Biology - Hans Knöll Institute Jena (1)
Munich Cluster for Systems Neurology (SyNergy), Ludwig-Maximilians-University München, Munich, Germany (1)
National Taiwan University Hispital (1)
Professor, Department of Cellular and Molecular Pharmacology (1)
Proteomics & Mass Spectrometry Laboratory, ISPAAM, National Research Council, Naples, Italy (1)
School of Medicine, Fu Jen Catholic University, New Taipei, Taiwan (1)
The University of Texas at Austin (1)

IsPrivate

False (2)

Model Flag

Non Kinetic (1)

Modification

4-tetrahydrothiazine-3-carboxylic acid (1)

Study type

Transcription profiling by array (46)
RNA-seq of coding RNA (8)
ChIP-seq (5)
Methylation profiling by array (5)
Transcription profiling by SAGE (2)
Unknown experiment type (2)
Other (2)
ChIP-chip by tiling array (1)
Plant - High-throughput sequencing (1)
Comparative genomic hybridization by array (1)
RNA-seq of non coding RNA (1)

Release Date

2023 (106)
2022 (106)
2021 (106)
2025 (101)
2020 (94)
2024 (86)
2016 (70)
2019 (66)
2017 (61)
2015 (59)
2014 (56)
2018 (53)
2013 (35)
2012 (30)
2011 (21)
2010 (15)
2026 (14)
2009 (13)
2007 (9)
2008 (8)
2005 (3)
2004 (3)
2002 (1)
2001 (1)
1999 (1)

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Toxicogenomic responses of C. elegans to gold nanoparticles

We used Au nanoparticles (Au-NPs) as a model for studying particle specific effects of manufactured nanomaterials (MNMs) by examining the toxicogenomic responses in a model soil organism, free living nematode Caenorhabditis elegans. Global genome expression for nematodes exposed to 4-nm citrate-coat...

ORGANISM(S): Caenorhabditis elegans

2012-04-15 | E-GEOD-32521 | biostudies-arrayexpress

Hepatitis B Surface Antigen Loss and Hepatocellular Carcinoma Development in Patients With Dual Hepatitis B and C Infection.

Not available

S-EPMC4998890 | biostudies-literature

Tseng2012 - Circadian clock of N.crassa

Tseng2012 - Circadian clock of N.crassa A comprehensive model of the circardian clock of fungal Neurospora crassa , which encompasses existing knowledge of the biochemistry of Neurospora clock, is described by Tseng et al. (2012). The model is ...

2024-09-02 | BIOMD0000000437 | BioModels

Insights into the Role of Vitamin C in Stabilizing Organic and Perovskite Solar Cells.

Not available

S-EPMC11873947 | biostudies-literature

Activation of hepatic stellate cells by the ubiquitin C-terminal hydrolase 1 protein secreted from hepatitis C virus-infected hepatocytes.

Not available

S-EPMC5493679 | biostudies-literature

Barriers to hepatitis C direct-acting antiviral therapy among HIV/hepatitis C virus-coinfected persons.

Not available

S-EPMC7904967 | biostudies-literature

Mast cell expression data from murine aryl hydrocarbon receptor (AhR) null, AhR_d and normal control mice

We found that AhR, a unique chemical sensor, is critical in controlling mast cell differentiation, growth and function in vitro and in vivo. This study seeks to further the understanding of the mechanisms of how AhR control mast cell homeostasis. Three different batches of bone marrow derived mast c...

ORGANISM(S): Mus musculus

2013-04-01 | E-GEOD-44715 | biostudies-arrayexpress

Discovery of Pyrazolo[4,3-c]quinolines Derivatives as Potential Anti-Inflammatory Agents through Inhibiting of NO Production.

Not available

S-EPMC6102577 | biostudies-literature

Binding of ATP to the CBS domains in the C-terminal region of CLC-1.

Not available

S-EPMC3068280 | biostudies-literature

Tumor Necrosis Factor-α-Induced C-C Motif Chemokine Ligand 20 Expression through TNF Receptor 1-Dependent Activation of EGFR/p38 MAPK and JNK1/2/FoxO1 or the NF-κB Pathway in Human Cardiac Fibroblasts.

Not available

S-EPMC9409325 | biostudies-literature