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ProteomicsDIA-Umpire: comprehensive computational framework for data independent acquisition proteomics
This dataset consists of 44 raw MS files, comprising 27 DIA (SWATH) and 15 DDA runs on a TripleTOF 5600 and of two raw mass spectrometry files acquired on a Q Exactive. The composition of the dataset is described in the manuscript by Tsou et al., titled: "DIA-Umpire: comprehensive computational fra...
ORGANISM(S): Homo sapiens (Human) Escherichia coli 
2015-01-21 | PXD001587 | Pride
Swath Dia 
ProteomicsUntargeted data independent acquisition proteomics analysis using Orbitrap mass spectrometers and DIA-Umpire
Untargeted data independent acquisition proteomics analysis using Orbitrap mass spectrometers and DIA-Umpire
ORGANISM(S): Homo sapiens (Human) 
2016-06-16 | PXD003179 | Pride
Human Dia Dia-umpire 
Proteomics,MultiomicsDIA-Umpire: comprehensive computational framework for data independent acquisition proteomics
This dataset consists of 44 raw MS files, comprising 27 DIA (SWATH) and 15 DDA runs on a TripleTOF 5600 and of two raw mass spectrometry files acquired on a Q Exactive. The composition of the dataset is described in the manuscript by Tsou et al., titled: "DIA-Umpire: comprehensive computational fra...
ORGANISM(S): Escherichia Coli (ncbitaxon:562) Homo Sapiens (ncbitaxon:9606) 
2017-04-27 | MSV000081023 | MassIVE
ProteomicsUntargeted data independent acquisition proteomics analysis using Orbitrap mass spectrometers and DIA-Umpire
Untargeted data independent acquisition proteomics analysis using Orbitrap mass spectrometers and DIA-Umpire
ORGANISM(S): Homo Sapiens (ncbitaxon:9606) 
2017-04-01 | MSV000080875 | MassIVE
ProteomicsLFQbench enables a multi-centered benchmark study demonstrating robust proteomic label-free quantification
The consistent and accurate quantification of proteins is a challenging task for mass spectrometry (MS)-based proteomics. SWATH-MS uses data-independent acquisition (DIA) for label-free quantification. Here we evaluated five software tools for processing SWATH-MS data: OpenSWATH, SWATH2.0, Skyline, ...
ORGANISM(S): Escherichia Coli (ncbitaxon:562) Homo Sapiens (ncbitaxon:9606) Saccharomyces Cerevisiae (ncbitaxon:4932) 
2017-04-27 | MSV000081024 | MassIVE
ProteomicsHs-CHPP_LungCancer-Hp-RP-StageTip_CL83
Mining Missing Membrane Proteins, Hp-RP StageTips, CL83
ORGANISM(S): Homo Sapiens (human) 
2015-12-31 | PAe005364 | PeptideAtlas
ProteomicsHs-CHPP_LungCancer-Hp-RP-StageTip_A549
Mining Missing Membrane Proteins, Hp-RP StageTips, A549
ORGANISM(S): Homo Sapiens (human) 
2015-12-31 | PAe005358 | PeptideAtlas
ProteomicsHs-CHPP_LungCancer-Hp-RP-StageTip_H3255
Mining Missing Membrane Proteins, Hp-RP StageTips, H3255
ORGANISM(S): Homo Sapiens (human) 
2015-12-31 | PAe005336 | PeptideAtlas
ProteomicsHs-CHPP_LungCancer-Hp-RP-StageTip_PC9
Mining Missing Membrane Proteins, Hp-RP StageTips, PC9
ORGANISM(S): Homo Sapiens (human) 
2015-12-31 | PAe005379 | PeptideAtlas
ProteomicsHs-CHPP_LungCancer-Hp-RP-StageTip_CL141
Mining Missing Membrane Proteins, Hp-RP StageTips, CL141
ORGANISM(S): Homo Sapiens (human) 
2015-12-31 | PAe005374 | PeptideAtlas
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