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Unknown (1025)
Transcriptomics (103)
Genomics (91)
Proteomics (51)
Other (7)
Metabolomics (3)
Methylation profiling (2)

Organisms

Homo sapiens (74)
Mus musculus (32)
Aerococcus urinae NBRC 15544 = CCUG 36881 (27)
Andropogon gerardi (27)
Bacteria (27)
Rhizobium leguminosarum (6)
Schizosaccharomyces pombe (4)
Thermococcus kodakarensis (4)
Saccharomyces cerevisiae (4)
Drosophila melanogaster (3)
Arabidopsis thaliana (3)
Pyrococcus furiosus (3)
Pseudomonas aeruginosa (3)
Vibrio parahaemolyticus (2)
Listeria monocytogenes EGD-e (2)
Streptomyces venezuelae (1)
Glycine max (1)
Canis lupus familiaris (1)
Danio rerio (1)
Vibrio parahaemolyticus RIMD 2210633 (1)
Planococcus halocryophilus (1)
Neisseria meningitidis 8013 (1)
Acetivibrio thermocellus (1)
Thermoplasma acidophilum (1)
Pyrodictium abyssi (1)
Salmonella enterica (1)
Haloferax volcanii (1)
Sulfolobus acidocaldarius (1)
Bacillus subtilis (1)
Escherichia coli (1)

Organisms

Homo sapiens (22)
Mus musculus (8)
Thermococcus kodakarensis (4)
Drosophila melanogaster (3)
Pseudomonas aeruginosa (3)
Pyrococcus furiosus (2)
Saccharomyces cerevisiae (2)
Neisseria meningitidis 8013 (1)
Thermoplasma acidophilum (1)
Planococcus halocryophilus (1)
Listeria monocytogenes EGD-e (1)
Methylacidiphilum fumariolicum SolV (1)
Pyrodictium abyssi (1)
Haloferax volcanii (1)
Acetivibrio thermocellus (1)
Lathyrus oleraceus (1)
Sulfolobus acidocaldarius (1)
Schizosaccharomyces pombe (1)
Salmonella enterica (1)
Vibrio parahaemolyticus (1)
Bacillus subtilis (1)
Escherichia coli (1)
Arabidopsis thaliana (1)

Repository

biostudies-arrayexpress (72)
ENA (70)
geo (59)
pride (27)
jPOST (12)
MassIVE (7)
iProX (4)
MetaboLights (3)
EGA (2)
PanoramaPublic (1)

Tissue

Cell culture (6)
Plant cell (6)
Epithelial cell (3)
Blood cell (2)
Fibroblast (2)
Leaf (2)
Cerebrospinal fluid (1)
Epithelial cell of lung (1)
IMR-90 cell (1)
Kidney (1)
Liver (1)
Pancreas (1)
Permanent cell line cell (1)
Photosynthetic cell (1)
Root (1)
Seedling (1)

Disease

Influenza (2)
Acute monoblastic leukaemia (1)
Autism spectrum disorder (1)
Autosomal recessive polycystic kidney disease (1)
Colon cancer (1)
Disease free (1)
Melanoma (1)
Pancreatic cancer (1)
Pancreatic ductal carcinoma (1)
Prostate cancer (1)
Trypanosomiasis (1)

Technology Type

Mass Spectrometry (27)
Shotgun proteomics (16)
Affinity purification coupled with mass spectrometry proteomics (4)
Mass spectrometry (3)
Bottom-up proteomics (3)
Data-dependent acquisition (2)
Gel-based experiment (2)
Chemical cross-linking coupled with mass spectrometry proteomics (1)
Top-down proteomics (1)

Instrument Platform

Illumina HiSeq 2000 (3)
Q Exactive HF-X (2)
Axon- GenePix4000B (1)
Axon GenePix 4000B scanning hardware (1)
Illumina NovaSeq 6000 (1)
Illumina HiSeq 4000 (1)
NextSeq 500 (1)
Orbitrap Eclipse (1)
Orbitrap Fusion Lumos (1)
Q Exactive (1)
Q Exactive HF (1)
Q Exactive Plus (1)
Liquid Chromatography MS - alternating - reverse-phase (1)
Liquid Chromatography MS - positive - reverse phase (1)
Liquid Chromatography MS - negative - reverse phase (1)

Publication Date

2025 (34)
2023 (26)
2022 (15)
2012 (13)
2021 (11)
2024 (11)
2013 (10)
2014 (8)
2015 (7)
2008 (7)
2020 (6)
2010 (6)
2009 (6)
2011 (5)
2026 (4)
2016 (4)
2019 (4)
2018 (2)
2017 (2)
2007 (1)
2006 (1)
2004 (1)

CHEBI ID

CHEBI:17126 (2)
CHEBI:27570 (2)
CHEBI:16811 (2)
CHEBI:15428 (2)
CHEBI:16865 (2)
CHEBI:15891 (2)
CHEBI:16919 (2)
CHEBI:50603 (1)
CHEBI:38407 (1)
CHEBI:67849 (1)
CHEBI:167877 (1)
CHEBI:24676 (1)
CHEBI:47877 (1)
CHEBI:24588 (1)
CHEBI:47987 (1)
CHEBI:22495 (1)
CHEBI:12071 (1)
CHEBI:31725 (1)
CHEBI:135063 (1)
CHEBI:134216 (1)
CHEBI:16039 (1)
CHEBI:86537 (1)
CHEBI:68566 (1)
CHEBI:609827 (1)
CHEBI:28498 (1)
CHEBI:16284 (1)
CHEBI:16666 (1)
CHEBI:25901 (1)
CHEBI:2089 (1)
CHEBI:28816 (1)

Metabolite Name

GABA (2)
Lactic acid (2)
Histidine (2)
Leucine (2)
Indoleacetic acid (2)
Vanillic acid (2)
Glycine (2)
Valine (2)
Propionylcarnitine (2)
Citrulline (2)
Nicotinic acid (2)
Kynurenine (2)
Carnitine (2)
Succinic acid (2)
Acetylcarnitine (2)
Methionine (2)
Phenylpyruvic acid (2)
Itaconic acid (2)
Arginine (2)
Glyceric acid (2)
Lysine (2)
Malic acid (2)
Homoserine (2)
Asparagine (2)
Tyrosine (2)
Serine (2)
Alanine (2)
Threonine (2)
Proline (2)
Phenylalanine (2)

First Public Date

2025 (27)
2022 (10)
2024 (8)
2023 (5)
2020 (5)
2026 (4)
2014 (3)
2018 (2)
2015 (2)
2021 (1)
2017 (1)
2016 (1)
2013 (1)

Classification

bacteria (8)

Study type

Transcription profiling by array (38)
ChIP-seq (10)
RNA-seq of coding RNA (5)
ChIP-chip by tiling array (3)
Methylation profiling by array (3)
ChIP-chip by array (2)
RNA-seq of coding RNA from single cells (2)
RNA-seq of non coding RNA (2)
RIP-chip by array (1)
High-throughput sequencing (1)
Cell line - High-throughput sequencing (1)
Comparative genomic hybridization by array (1)
Other (1)
MicroRNA profiling by array (1)
RNA-seq of total RNA (1)

Release Date

2022 (67)
2021 (65)
2014 (65)
2023 (61)
2012 (59)
2016 (58)
2025 (57)
2009 (55)
2024 (55)
2020 (51)
2015 (45)
2013 (45)
2019 (45)
2011 (44)
2010 (42)
2018 (40)
2008 (38)
2017 (34)
2007 (30)
2006 (23)
2005 (21)
2003 (18)
2004 (15)
2001 (15)
2002 (11)
2000 (11)
1999 (10)
2026 (8)
1998 (7)
1997 (1)

Lab affiliation

Forschungszentrum Juelich ZEA-3 Analytics Wilhelm-Johnen-Str D-52425 Juelich Germany (4)
1Institute of Lung Health and Immunity, Comprehensive Pneumology Center Munich with the CPC-M bioArchive, Helmholtz Center Munich, Research Center for Environmental Health, Member of the German Center of Lung Research (DZL), Germany (1)
Borg AlArab Higher Institute of Engineering and Technology, New Borg AlArab City, Alexandria, Egypt (1)
Cancer Research UK Manchester Institute Systems Oncology (1)
Center for Translational Research, Children’s National Research Institute, Children’s National Hospital, Washington,DC, United States & Children’s Hospital of Philadelphia, Philadelphia, PA, United States (1)
Core Facility - Metabolomics and Proteomics Core, Helmholtz Center Munich, German Research Center for Environmental Health (GmbH), Neuherberg, Germany (1)
Cutaneous Oncology/Tumor Biology Moffitt Cancer Center Tampa, FL, USA (1)
Department of Computational and RNA Biology, Copenhagen University, Denmark (1)
Department of Ecogenomics and Systems Biology, University of Vienna, Vienna, Austria. (1)
Department of Medical Mycology, Institute of Dermatology, Chinese Academy of Medical Science and Peking Union Medical College; Jiangsu Key Laboratory of Molecular Biology for Skin Diseases and STIs, Nanjing 210042, China (1)
Department of Microbiology at NYU Grossman School of Medicine. (1)
Department of Radiation Oncology Associate Professor (1)
Department of Structural and Computational Biology, Max Perutz Labs, Campus Vienna Biocenter 5, 1030 Vienna, Austria (1)
Faculty of Medical Sciences, Institute for Cell and Molecular Biosciences, Newcastle upon Tyne, UK (1)
Gene Expression Laboratory, Salk Institute for Biological Studies, La Jolla, CA 92037, USA (1)
Group Leader Department Cell and Developmental Biology John Innes Centre Norwich, UK (1)
Huazhong Agricultural University (1)
Keck MS & Proteomics Resource Yale School of Medicine (1)
Kobilka Institute of Innovative Drug Discovery, School of Medicine, The Chinese University of Hong Kong, Shenzhen, Shenzhen 518172, China. (1)
Laboratory of the Regulation for Intractable Infectious Diseases, National Institute of Biomedical Innovation, Health and Nutrition, Japan (1)
Professor at Section for Computational and RNA Biology, Copenhagen University (1)
State Key Laboratory of Pharmaceutical Biotechnology, School of Life Sciences, Nanjing University, Nanjing, 210000, China. (1)
Stephen Fried Johns Hopkins University Fried Lab Chemistry Department (1)
University Heidelberg, Centre for molecular biology, mass spectrometry and proteomics core facility (1)

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