Uga - OmicsDI

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Metabolite Name

Γ-butyrobetaine (1)
Sphingenine (1)
(16:0) 1-palmitoyl-sn-glycero-3-phosphocholine (1)
(14:0) 1-myristoyl-sn-glycero-3-phosphocholine (1)
Β-alanine betaine (1)
Sulfobetaine (1)
S,S-dimethyl-beta-propiothetin (1)
O-propanoyl-L-carnitine (1)
Homarine (1)
N(omega),N(omega)-dimethyl-L-arginine (1)
Alanine betaine (1)
Proline betaine (1)
L-valine (1)
L-isoleucine (1)
L-leucine (1)
L-tyrosine (1)
L-tryptophan (1)
L-phenylalanine (1)
L-glutamine (1)
L-proline (1)
L-arginine (1)
Pipecolate (1)
Creatine (1)
Trigonelline (1)
Guanine (1)
Choline (1)
Betaine (1)
Adenine (1)
Ectoine (1)
Adenosine (1)

IsPrivate

False (1)

First Public Date

2019 (387)
2026 (25)
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2025 (12)
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Classification

protozoa (4)
bacteria (3)
viruses (2)

Modelling Approach

Constraint-based model (1)

Study type

Transcription profiling by array (31)
RNA-seq of coding RNA (6)
ChIP-chip by array (4)
Other (3)
RNA-seq of non coding RNA (3)
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DNA-seq (1)

Release Date

2023 (77)
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2008 (10)
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2006 (6)
2002 (6)
2003 (5)
2001 (5)
2004 (4)
1998 (1)

Lab affiliation

Emory University (3)
PI The Wistar Institute, Philadelphia, PA, USA; (1)
National Key Laboratory of Wheat and Maize Crop Science, Collaborative Innovation Center of Henan Grain Crops, College of Agronomy, Henan Agricultural University, China (1)
CCRC - UGA (1)
Department of Biochemistry, The University of Western Ontario, London, Ontario, Canada. Department of Chemistry, The University of Western Ontario, London, Ontario, Canada. (1)
[1]University of Iowa, Carver College of Medicine, Iowa City, Iowa, 52242, USA [2]University of Rochester, Rochester, NY, 14642 (1)
Exploring the Dynamics of Proteomes laboratory; UGA/CEA/Inserm U1038 CEA/Grenoble 17 Avenue des Martyrs F-38054 Grenoble (1)
Cellular biology, Moreno lab, UGA, USA (1)
Department of Cellular Biology, University of Georgia, Athens, GA 30602 (1)
EDyP, BIG-BGE, UGA, CEA, Inserm (1)
Univ. Grenoble Alpes, CEA, INSERM, IRIG, BGE, F-38000 Grenoble, France (1)
University of Edinburgh, Institute of Genetics and Molecular Medicine, Edinburgh, EH4 2XR (1)
Department of Biology, Center for RNA Biology, University of Rochester, Rochester, New York, United States of America (1)
Exploring the Dynamics of Proteomes laboratory; UGA/CEA/Inserm U1038, CEA/Grenoble, 17 Avenue des Martyrs, F-38054 Grenoble (1)
Institute of Plant Breeding, Genetics and Genomics, University of Georgia, Griffin, GA, United States (1)
Center for Tropical and Emerging Global Diseases; Department of Cellular Biology, University of Georgia, Athens, Georgia, USA (1)
MGH Cancer Center/Harvard Medical School (1)
National Key Laboratory of Wheat and Maize Crop Science, Collaborative Innovation Center of Henan Grain Crops, College of Agronomy, Henan Agricultural University,China (1)
Chair of Biochemistry II, Theodor Boveri-Institute, Biocenter, University of Würzburg, Würzburg, Germany (1)

Tags

pathogen (9)
pathogen:protozoan (4)
pathogen:bacterium (3)
pathogen:virus (2)

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Chlamydia psittaci UGA

Chlamydia psittaci UGA Genome sequencing and assembly

PRJNA217087 | ENA

Aedes aegypti strain:UGA

Aedes aegypti strain:UGA Transcriptome or Gene expression

PRJNA420687 | ENA

Cotesia congregata filamentous virus 3 strain:UGA

Cotesia congregata filamentous virus 3 strain:UGA Genome sequencing and assembly

PRJNA1312094 | ENA

How are UGA sense codons translated as tryptophan in certain ciliates but not in others?

Investigations of ciliate UGA translation

PRJEB60781 | ENA

High resolution ribosome profiling reveals gene-specific details of UGA recoding in selenoprotein biosynthesis

SECIS binding protein 2 (SECISBP2) increases the efficiency of recoding of UGA codons as selenocysteine (Sec) during translation of mRNAs containing a selenocysteine insertion sequence (SECIS) in the 3’-untranslated region. Using ribosomal profiling, we have previously studied selenoprotein translat...

ORGANISM(S): Homo sapiens

2022-11-02 | GSE145465 | GEO

Mitovirus UGA(Trp) codon usage parallels that of host mitochondria.

Not available

S-EPMC5517309 | biostudies-literature

Translational redefinition of UGA codons is regulated by selenium availability.

Not available

S-EPMC3707644 | biostudies-literature

Structure of the mammalian ribosome as it decodes the selenocysteine UGA codon.

Not available

S-EPMC10064918 | biostudies-literature

Recoding elements located adjacent to a subset of eukaryal selenocysteine-specifying UGA codons.