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GenomicsImproved Super-Resolution Ribosome Profiling Reveals Prevalent Translation of Upstream ORFs and Small ORFs in Arabidopsis
Improved Super-Resolution Ribosome Profiling Reveals Prevalent Translation of Upstream ORFs and Small ORFs in Arabidopsis
PRJNA759858 | ENA
UnknownImproved super-resolution ribosome profiling reveals prevalent translation of upstream ORFs and small ORFs in Arabidopsis.
Not available
S-EPMC10896292 | biostudies-literature
UnknownUpstream ORFs are prevalent translational repressors in vertebrates.
Not available
S-EPMC4818764 | biostudies-literature
GenomicsPan-viral ORFs discovery using massively parallel ribosome profiling
Pan-viral ORFs discovery using massively parallel ribosome profiling
PRJNA1136820 | ENA
UnknownReinitiation involving upstream ORFs regulates ATF4 mRNA translation in mammalian cells.
Not available
S-EPMC509193 | biostudies-literature
OtherPan-viral ORFs discovery using massively parallel ribosome profiling
Defining viral proteomes is crucial to understanding viral life cycles and immune recognition but the landscape of translated regions remains unknown for most viruses. We have developed massively parallel ribosome profiling (MPRP) to determine open reading frames (ORFs) across tens of thousands of d...
ORGANISM(S): synthetic construct Homo sapiens 
2025-06-12 | GSE272406 | GEO
TranscriptomicsImproved Super-Resolution Ribosome Profiling Reveals Prevalent Translation of Upstream ORFs and Small ORFs in Arabidopsis
We used Ribo-seq (Ribosome profiling) combining with RNA-seq to explore the translational landscape of Arabidopsis Col-0 seedling. We generated 6 biological replicates of RNA-seq and Ribo-seq data for Arabidopsis Col-0 seedling. 3 of the replicates were collected after 20 minutes of 0.1% DMSO treatm...
ORGANISM(S): Arabidopsis thaliana 
2023-09-20 | GSE183264 | GEO
UnknownDAP5 drives translation of specific mRNA targets with upstream ORFs in human embryonic stem cells.
Not available
S-EPMC9479741 | biostudies-literature
UnknownDoes eIF3 promote reinitiation after translation of short upstream ORFs also in mammalian cells?
Not available
S-EPMC5731805 | biostudies-literature
GenomicsSaccharomyces species
Evolutionary emergence and preservation of microproteins encoded by upstream ORFs
PRJNA1429909 | ENA
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