Uti - OmicsDI

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mixed sample (3)
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cellular organisms (2)
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Organisms

Escherichia coli (56)
Mus musculus (30)
Klebsiella pneumoniae (27)
Homo sapiens (6)
Pseudomonas aeruginosa (5)
Proteus mirabilis (4)
Proteus mirabilis HI4320 (3)
human metagenome (3)
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Tissue

Urine (8)
Epithelial cell (1)
Urinary bladder epithelium (1)
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Disease

Chronic kidney disease (1)
Urinary tract infection (1)

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Mass Spectrometry (13)
Shotgun proteomics (10)
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CHEBI ID

CHEBI:82912 (2)
CHEBI:133057 (2)
CHEBI:70958 (2)
CHEBI:16325 (2)
CHEBI:16755 (2)
CHEBI:9907 (2)
CHEBI:16525 (2)
CHEBI:25017 (2)
CHEBI:15428 (2)
CHEBI:15741 (2)
CHEBI:18123 (2)
CHEBI:17568 (2)
CHEBI:16449 (2)
CHEBI:16359 (2)
CHEBI:27480 (2)
CHEBI:32816 (2)
CHEBI:16737 (2)
CHEBI:16919 (2)
CHEBI:15724 (2)
CHEBI:9410 (2)
CHEBI:28865 (2)
CHEBI:17368 (2)
CHEBI:18089 (2)
CHEBI:30769 (2)
CHEBI:157596 (1)
CHEBI:76754 (1)
CHEBI:185598 (1)
CHEBI:188430 (1)
CHEBI:79785 (1)
CHEBI:190859 (1)

Metabolite Name

2-[3-(sulfooxy)phenyl]acetic acid (2)
Cinnamoylglycine (2)
Undecanedioic acid (2)
Phenylpyruvic acid (2)
Citric acid (2)
Alanine (2)
Tetradecanedioic acid (2)
Palmitic acid (2)
Hexadecanedioic acid (2)
Uric acid (2)
Thymidine (2)
Hippuric acid (2)
C24:1 ceramide (1)
C24:0 ceramide (1)
C22:0 ceramide (1)
C20:0 ceramide (1)
C18:1 ceramide (1)
C18:0 ceramide (1)
C16:0 ceramide (1)
Tauro-β-muricholic acid (1)
Tauro-α-muricholic acid (1)
Dizocilpine (1)
17beta-Hydroxy-5alpha-androstan-3-one cyclohexanecarboxylate (1)
Desethyletomidate (1)
PC(O-16:0/4:0)[U] (1)
OG-PC (1)
PD 173074 (1)
(O)-Propionylcarnitine (1)
Salithion (1)
Promazine sulfoxide (1)

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Modelling Approach

Ordinary differential equation model (3)

Lab affiliation

J. Craig Venter Institute (2)
J. Craig Venter Institute, Rockville, MD 20850 (2)
1. Istitituto Sperimentale Italiano L. Spallanzani,Milano, Italy; 2. Dipartimento di Scienze Veterinarie e Sanità Pubblica, Università degli Studi di Milano, Milano, Italy. (1)
Boston Children's Hospital and Harvard Medical School (1)
Institut of Biochemistry and Molecular Biology, University of Southern Denmark (1)
J. Craig Venter Institute, Rockville MD 20850 USA (1)
Laboratorio de Biofilms Microbianos, Departamento de Microbiología, Instituto de Investigaciones Biológicas Clemente Estable (1)
Staff Research Scientist - Professor Level Center of Systems Biology Proteomics Laboratory Biomedical Research Foundation, Academy of Athens (1)
University of Cambridge (1)
University of Notre Dame (1)
Zaia Lab, Department of Biochemistry, Center for Biomedical Mass Spectrometry, Boston University School of Medicine, Boston, Massachusetts 02118, United States (1)

IsPrivate

False (3)

Classification

bacteria (584)

Modification

15.99491 (1)
57.02146 (1)

Study type

Transcription profiling by array (32)
RNA-seq of coding RNA (5)
RNA-seq of coding RNA from single cells (4)
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ChIP-seq (3)
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Methylation profiling by high throughput sequencing (2)
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Cell line - Two-color microarray (1)
Human - Single-cell sequencing (1)
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Release Date

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Mouse Placenta:Maternal experimental UTI vs Sham UTI infected

Transcriptional profiling to map the changes in placental function subsequent to maternal experimental UTI that result in intrauterine growth restriction. One condition experiment: 2 biological replicates of placenta from mice with maternal experimental UTI, 2 biological replicates of placenta from ...

ORGANISM(S): Mus musculus

2011-09-09 | E-GEOD-32028 | biostudies-arrayexpress

Escherichia coli strain:UTI | isolate:P10192

Escherichia coli strain:UTI | isolate:P10192 Genome sequencing and assembly

PRJNA743759 | ENA

Escherichia coli strain:UTI | isolate:P10243

Escherichia coli strain:UTI | isolate:P10243 Genome sequencing and assembly

PRJNA743767 | ENA

Escherichia coli strain:UTI | isolate:P10301

Escherichia coli strain:UTI | isolate:P10301 Genome sequencing and assembly

PRJNA743764 | ENA

Escherichia coli strain:UTI | isolate:P10405

Escherichia coli strain:UTI | isolate:P10405 Genome sequencing and assembly

PRJNA743766 | ENA

Functional redundancy of iron acquisition systems is required for Proteus mirabilis pathogenesis during UTI

Proteus mirabilis is a primary cause of complicated urinary tract infections (UTI). Surprisingly, iron acquisition systems have been poorly characterized in this uropathogen despite the urinary tract being iron-limited. In this report the transcriptome of strain HI4320, cultured under iron limitat...

ORGANISM(S): Proteus mirabilis HI4320

2010-09-09 | E-GEOD-18051 | biostudies-arrayexpress

UTI phages LCPR1

UTI phages LCPR1 cocktail

PRJEB98507 | ENA

Mouse Placenta:Maternal experimental UTI vs Sham UTI infected

Transcriptional profiling to map the changes in placental function subsequent to maternal experimental UTI that result in intrauterine growth restriction.

ORGANISM(S): Mus musculus

2011-09-10 | GSE32028 | GEO

UTI metoganenomics

Precision Metagenomic analysis of Urinary Track Infection (UTI)

PRJEB63301 | ENA

IL22RKO bladders following UTI

PRJNA731358 | ENA

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2602 Results

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