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Genomics (76)
Unknown (63)
Transcriptomics (21)
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Organisms

Homo sapiens (87)
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EGA (71)
biostudies-arrayexpress (26)
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Unknown (1)

Publication Date

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UNIPROT ID/AC

P17612 (1)
P54750 (1)
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Q5T5Y4 (1)

CHEBI ID

CHEBI:15422 (3)
CHEBI:15354 (3)
CHEBI:15713 (3)
CHEBI:15741 (3)
CHEBI:15756 (3)
CHEBI:16010 (3)
CHEBI:16027 (3)
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CHEBI:15996 (1)
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CHEBI:17552 (1)
CHEBI:38068 (1)

Metabolite Name

Taurine (2)
(+)-Pyroglutamic acid (1)
(+/-)-Pipecolate (1)
(+/-)-Propionylcarnitine chloride (1)
(-)-Tetradecanoylcarnitine (1)
(10E)-12-Oxododecenoic acid (1)
(10E,12Z,15Z)-9-hydroxyoctadeca-10,12,15-trienoic acid (1)
(13S)-Hydroxyoctadecadienoate (1)
(1s,3z)-3-[(2e)-2-[(1r,3ar,7as)-7a-Methyl-1-[(2r)-6-Methylheptan-2-Yl]-2,3,3a,5,6,7-Hexahydro-1h-Inden-4-Ylidene]ethylidene]-4-Methylidene-Cyclohexan-1-Ol (1)
(2-hydroxy-3-stearoyloxy-propyl) 2-(trimethylammonio)ethyl phosphate (1)
(2E)-2-Phenyl-2-propenoic acid (1)
(2E)-3-(1H-imidazol-4-yl)prop-2-enoic acid (1)
(2R,3R,4S,5S,6R)-2-[[(2R,3S,4S,5R,6R)-6-[(2R,3R,4S,5R,6R)-6-[(2S,3S,4R,5S)-3,4-dihydroxy-2,5-bis(hydroxymethyl)oxolan-2-yl]oxy-4,5-dihydroxy-2-(hydroxymethyl)oxan-3-yl]oxy-3,4,5-trihydroxy-oxan-2-yl]methoxy]-6-(hydroxymethyl)oxane-3,4,5-triol (1)
(2S)-1-[(2S)-2-azaniumyl-3-phenyl-propanoyl]pyrrolidine-2-carboxylate (1)
(2S)-1-[(2S)-5-amino-2-[[(2S)-2-amino-4-methyl-pentanoyl]amino]-5-keto-pentanoyl]proline (1)
(2S)-2-(methylamino)Pentanedioic acid (1)
(2S)-2-Amino-3-methylbutanoic acid (1)
(2S)-2-[[(4S)-4-amino-4-carboxy-butanoyl]amino]-4-methyl-pentanoic acid (1)
(2S)-2-amino-5-[[(1S)-1-carboxy-2-methyl-propyl]amino]-5-oxo-pentanoic acid (1)
(2S)-3-(5-mercapto-3-methyl-imidazol-4-yl)-2-(methylammonio)propionate (1)
(2S,3R)-(-)-Threonine (1)
(2S,3R)-2-[[[[9-[(2R,3R,4S,5R)-3,4-dihydroxy-5-(hydroxymethyl)-2-oxolanyl]-6-purinyl]amino]-oxomethyl]amino]-3-hydroxybutanoic acid (1)
(2S,3S)-alpha-Amino-beta-merthyl-n-valerate (1)
(2S,3S,4R)-2-aminohexadecane-1,3,4-triol (1)
(3R)-3-[(Z)-octadec-9-enoyl]oxy-4-(trimethylazaniumyl)butanoate (1)
(3R,3'S)-3,3'-Dihydroxy-beta,beta-carotene-4,4'-dione (1)
(3S,6S)-3-Benzyl-6-(2-methylpropyl)piperazine-2,5-dione (1)
(4S)-4-amino-5-[[(1S)-1-carboxyethyl]amino]-5-keto-valeric acid (1)
(6R)-6-[(3R,5S,7R,8R,9S,10S,13R,14S,17R)-3,7-dihydroxy-10,13-dimethyl-2,3,4,5,6,7,8,9,11,12,14,15,16,17-tetradecahydro-1H-cyclopenta[a]phenanthren-17-yl]-2-methylheptanoic acid (1)
(9Z)-octadec-9-enamide (1)

IsPrivate

False (2)

Submitter Keywords

Ersilia (1)
FAIR-AIML (1)
Machine Learning Model (1)

Modelling Approach

Computational model (1)
Ordinary differential equation model (1)

Study type

Transcription profiling by array (6)
ChIP-seq (3)
Methylation profiling by array (3)
RNA-seq of coding RNA (3)
RNA-seq of coding RNA from single cells (2)
Baseline (1)
Unknown experiment type (1)
ChIP-chip by tiling array (1)
Cell line - High-throughput sequencing (1)
Spatial transcriptomics by high-throughput sequencing (1)
Comparative genomic hybridization by array (1)
Single nucleus RNA sequencing (1)
DNA-seq (1)
Methylation profiling by high throughput sequencing (1)

Release Date

2021 (10)
2022 (9)
2024 (7)
2025 (7)
2019 (6)
2018 (6)
2010 (6)
2026 (5)
2015 (5)
2012 (5)
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2009 (4)
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2017 (4)
2016 (3)
2006 (2)
2008 (1)

Lab affiliation

Center for Network Systems Biology, Boston University (1)
Department of Molecular Biology and Biotechnology, The University of Sheffield, UK. (1)
Immunology Programme, The Babraham Institute, Babraham Research Campus, Cambridge, CB22 3AT, United Kingdom. (1)
School of Biosciences University of Sheffield Western Bank Sheffield S10 2TN United Kingdom (1)

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The impact of nutritional supplementation on sweat metabolomic content

Sweat is emerging as a prominent biosource for real-time human performance monitoring applications. Although promising, sources of variability must be identified to truly utilize sweat for biomarker applications. In this proof-of-concept study, a targeted metabolomics method was applied to sweat col...

2021-03-15 | MTBLS2427 | MetaboLights

RNA-sequencing of transgenic Arabidopsis seedlings constitutively expressing a Colletotrichum higginsianum effector

The fungal pathogen Colletotrichum higginsianum secretes effector proteins during infection of Arabidopsis. To explore the host processes perturbed by the effector candidate ChEC108 in host plants, transgenic Arabidopsis lines were generated to express AtUBQ10pro:ChEC108-eGFP or AtUBQ10pro:ChEC108^D...

ORGANISM(S): Arabidopsis thaliana

2026-05-21 | E-MTAB-16996 | biostudies-arrayexpress

Regorafenib for the Treatment of Advanced Gastric Cancer (INTEGRATE): A Multinational Placebo-Controlled Phase II Trial.

Not available

S-EPMC5019744 | biostudies-literature

Transcription profiling of field-caught permethrin-resistant Anopheles gambiae shows over-expression of CYP6P3, a P450 that metabolizes pyrethroids

Field-caught permethrin-resistant Anopheles gambiae s.s. overexpress CYP6P3, a P450 that metabolizes pyrethroids

ORGANISM(S): Anopheles gambiae s.s.

2009-01-17 | E-MTAB-52 | biostudies-arrayexpress

Proteomic comparison of HliD and Ycf39 protein abundances in FLAG-tagged chlorophyll synthase co-immunoprecipitation assays of control and CrtR/CruF (carotenoid biosynthesis) knockout strains of Synechocystis sp. PCC 6803.

Chlorophyll a synthase (ChlG) is the enzyme responsible for attaching either a geranygeranyl or phytyl group to the chlorophyllide macrocycle during chlorophyll biosynthesis. Previous co-immunoprecipitation assays using FLAG-tagged ChlG identified the high light inducible protein HliD and the photos...

ORGANISM(S): Synechocystis sp. (strain PCC 6803 / Kazusa)

2022-08-18 | PXD020471 | Pride

Experimental and computational approaches for deep metabolome annotation with application to the ecotoxicological model organism Daphnia magna

Identifying metabolomes with greater coverage and confidence is a critical step towards interpreting the metabolic basis of human and environmental health. Yet for over two decades the field of metabolomics has been inhibited by limited metabolite identification. To address this, we developed the...

MTBLS2273 | MetaboLights

TP53 Germline Variations Influence the Predisposition and Prognosis of B-Cell Acute Lymphoblastic Leukemia in Children.

Not available

S-EPMC5815403 | biostudies-literature

MudPIT analysis of HSV-1 infected and mock-infected microsomal membranes and nuclear envelopes

Nuclear envelopes (NEs) and microsomal membranes (MMs) were isolated from HeLa cells infected or not with HSV-1 using well-established procedures as described in: Wilkie GS, et al. (2011) Mol Cell Proteomics 10: M110 003129. Korfali N, et al. (2010) Mol Cell Proteomics 9: 2571-2585. Florens L, Korf...

ORGANISM(S): Homo Sapiens (ncbitaxon:9606) Herpes Simplex Virus (type 1 / Strain 17) (ncbitaxon:10299)

2016-07-05 | MSV000079886 | MassIVE

Transcription profiling of Salmonella enterica serovar Typhimurium exposure to triclosan

S. Typhimurium SL1344 was exposed to the minimum inhibitory concentration of triclosan and the transcriptomic response analysed.

ORGANISM(S): Salmonella enterica

2009-08-28 | E-MEXP-2078 | biostudies-arrayexpress

A SNF2 protein targets variable copy number repeats and thereby influences allele-specific expression

ATRX is an X-linked gene of the SWI/SNF family whose role in vivo is currently unknown. Mutations in ATRX cause syndromal mental retardation. ATRX binds to tandem repeat (TR) sequences both in heterochromatin (e.g. telomeres) and euchromatin. Genes associated with these TRs can be dysregulated when ...

ORGANISM(S): Homo sapiens

2010-11-02 | E-GEOD-22162 | biostudies-arrayexpress

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