Valorization - OmicsDI

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Unknown (1700)
Genomics (125)
Proteomics (16)
Transcriptomics (8)
Models (2)
Metabolomics (1)

Organisms

Andropogon gerardi (12)
Bacteria (12)
Bartonella quintana JK 31 (12)
Canis lupus familiaris (12)
Clavibacter nebraskensis NCPPB 2581 (12)
Cnidaria (12)
Ensifer adhaerens (12)
Human alphaherpesvirus 1 strain 17 (12)
Human alphaherpesvirus 1 strain KOS (12)
Human betaherpesvirus 5 (12)
Human herpesvirus 2 strain 186 (12)
Mesocricetus auratus (12)
Miscanthus x giganteus (12)
Mus musculus (12)
Panicum virgatum (12)
Platyhelminthes (12)
Pseudomonas aeruginosa PA103 (12)
Rabies virus Nishigahara RCEH (12)
Ophiostoma piceae (1)
Streptomyces sp. Je 1-4 4N24 (1)
Curvularia clavata (1)
Xanthomonas citri subsp. citri 306 (1)
Methylorubrum extorquens (1)
Gelatoporia subvermispora (1)
Trametes versicolor (1)
Rhodotorula toruloides (1)
Gallus gallus (1)
Arnebia guttata (1)
Streptomyces rubiginosohelvolus (1)
cellular organisms (1)

Organisms

Trichoderma asperellum (9)
Stropharia rugosoannulata (3)
Macadamia ternifolia (2)
sludge metagenome (2)
bioreactor metagenome (2)
Streptomyces sp. Je 1-4 4N24 (1)
Rhodococcus sp. SBL1 (1)
Burkholderia sp. ISTR5 (1)
Burkholderia dolosa (1)
Alcaligenes aquatilis (1)
Pandoraea sp. ISTKB (1)
Actinotalea bogoriensis (1)
Brucella pituitosa (1)
Brucella intermedia (1)
Xanthomonas citri subsp. citri 306 (1)
Pseudomonas sp. KHU-1 (1)
Stutzerimonas kunmingensis (1)
Nocardiopsis changdeensis (1)
Stenotrophomonas sp. Ker107b (1)
Methylorubrum extorquens (1)
methanotroph enrichment culture (1)
Pseudomonas lini (1)
Curvularia clavata (1)
Pseudomonas shirazica (1)
lignocellulose-degrading enrichment culture (1)
Pseudomonas putida S12 (1)
Rhodotorula toruloides (1)
Oceanobacillus picturae (1)
Penicillium oxalicum (1)
Chlorella sorokiniana (1)

Repository

ENA (125)
pride (12)
geo (8)
BioModels (2)
iProX (2)
jPOST (1)
MassIVE (1)
MetaboLights (1)

Tissue

Cell culture (2)
Bark (1)
Colostrum (1)
Fruit (1)
Germinated grain (1)
Kernel (1)
Milk (1)
Multicellular organism (1)
Mycelium (1)
Plant cell (1)
Small intestine mucosa (1)

Disease

Disease free (1)

Technology Type

Mass Spectrometry (12)
Bottom-up proteomics (6)
Data-dependent acquisition (5)
Shotgun proteomics (3)
Gel-based experiment (2)
Mass spectrometry (1)
DiaPASEF (1)

Instrument Platform

Orbitrap Eclipse (1)
Liquid Chromatography MS - positive - reverse-phase (1)
Liquid Chromatography MS - negative - reverse-phase (1)

Publication Date

2025 (14)
2026 (4)
2024 (4)
2023 (4)
2020 (1)

CHEBI ID

CHEBI:11993 (2)
CHEBI:20375 (2)
CHEBI:36148 (2)
CHEBI:20374 (2)
CHEBI:1838 (2)
CHEBI:18642 (2)
CHEBI:303 (2)
CHEBI:19030 (2)
CHEBI:42677 (2)
CHEBI:15675 (2)
CHEBI:610 (2)
CHEBI:10963 (2)
CHEBI:3233 (2)
CHEBI:13923 (2)
CHEBI:22938 (2)
CHEBI:15925 (2)
CHEBI:12227 (2)
CHEBI:1051 (2)
CHEBI:19522 (2)
CHEBI:11543 (2)
CHEBI:11551 (2)
CHEBI:29772 (2)
CHEBI:5806 (2)
CHEBI:29773 (2)
CHEBI:24708 (2)
CHEBI:43221 (2)
CHEBI:14421 (2)
CHEBI:10793 (2)
CHEBI:15429 (2)
CHEBI:46828 (2)

Metabolite Name

5-n-acetyl-7-n-(d-alanyl)-legionaminic acid (1)
Glandicoline a (1)
Roquefortine d (1)
Histidyltryptophyldiketopiperazine (1)
Gamma-l-glutamyl-l-propargylglycine (1)
4alpha-carboxy-stigmasta-7,24(24(1))-dien-3beta-ol (1)
N8,n'8-citryl-bis(spermidine) (1)
Cyclooctatin (1)
9-hydroxy-12-oxo-15(z)-octadecenoic acid (1)
Ent-3beta-hydroxycassa-12,15-dien-2-one (1)
Salviol (1)
Biliverdin-ix-beta (1)
(3r)-3-hydroxy-16-methoxy-1,2-didehydro-2,3-dihydrotabersonine (1)
Roseoflavin (1)
Narcotoline hemiacetal (1)
(13s,14r)-1-hydroxy-13-o-acetyl-n-methylcanadine (1)
(13s,14r)-1,13-dihydroxy-n-methylcanadine (1)
(s)-1-hydroxy-n-methylcanadine (1)
Oryzalexin e (1)
Ent-sandaracopimaradien-3beta-ol (1)
(1r,10as)-1,4,10,10a-tetrahydrophenazine-1,6-dicarboxylate (1)
5-methylphenazine-1-carboxylate (1)
Nebramine (1)
4'-oxonebramine (1)
2-aminovalienone (1)
Validamine 7-phosphate (1)
Terpentecin (1)
Gamma-l-glutamyl-s-(hercyn-2-yl)-l-cysteine s-oxide (1)
S-(hercyn-2-yl)-l-cysteine s-oxide (1)
Glucoselysine (1)

IsPrivate

False (2)

First Public Date

2026 (45)
2025 (39)
2024 (17)
2023 (8)
2022 (4)
2021 (3)
2019 (3)
2018 (2)
2017 (2)
2020 (1)
2016 (1)

Classification

bacteria (3)

Modelling Approach

Metabolic network (1)
Constraint-based model (1)

Release Date

2025 (413)
2023 (253)
2022 (232)
2024 (210)
2021 (188)
2020 (115)
2026 (102)
2019 (76)
2018 (59)
2017 (27)
2016 (10)
2014 (7)
2015 (5)
2013 (2)
2006 (1)

Lab affiliation

Staff Scientist Biological Systems & Engineering Division Lawrence Berkeley National Laboratory Berkeley CA 94720 (2)
Bioiberica S.A.U., Av. Països Catalans 34, 08950 Esplugues de Llobregat, Barcelona, Spain (1)
Chalmers University of Technology (1)
Department of Chemical Science - University of Naples "Federico II" (1)
Department of Chemistry & Bioscience Aalborg University Denmark (1)
Department of chemistry and Bioscience, Aalborg University (1)
Division of Plant Science and Technology, College of Agriculture Food and Natural Resources and Interdisciplinary Plant Group, University of Missouri, Columbia, MO 65211, USA (1)
Industrial Biotechnology & Biocatalysis Group, Biotechnology Laboratory, School of Chemical Engineering, National Technical University of Athens, Athens, Greece (1)
Proteomics and Metabolomics Facility, University of Nebraska- Lincoln (1)
University of Cadiz (1)
Veterinary Faculty, University of Murcia, Department of Animal Production (1)

1852 Results

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