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TranscriptomicsOryza sativa ssp. indica Illumina lwhole-genome bisulfite sequencing used for coverage comparison next to the method plant-RRBS
The contained data consist of Illumina HiSeq reads generated genomic DNA of Oryza sativa ssp. indica used for comparative coverage aspects with plant-RRBS methylome profiling by bioinformatics analyses. The inbred control line and a derived epiline LR2 of the 4th selfing were analysed using whole-ge...
ORGANISM(S): Oryza sativa Indica Group 
2017-12-14 | E-MTAB-5002 | biostudies-arrayexpress
TranscriptomicsTranscriptome analysis of khd1-1, spen3-1 and hub1-4 Arabidopsis mutants
HISTONE MONOUBIQUITINATION1 (HUB1) and its ortholog HUB2 regulate expression of genes involved in flowering, dormancy and circadian clock. HUB1 and HUB2 interact with two RNA-binding proteins KHD and SPEN. Phenotype analysis of the knock-down khd1-1, knock-out spen3-1, and knock-out hub mutants sugg...
ORGANISM(S): Arabidopsis thaliana 
2018-05-14 | E-MTAB-6780 | biostudies-arrayexpress
TranscriptomicsChIP-seq of Oryza sativa ssp. indica epilines
The contained data consist of Illumina NextSeq reads generated genomic DNA of Oryza sativa ssp. indica used for ChIP-seq analysis. The inbred control line and a derived epiline LR2 of the 5th selfing were analysed using chromatin immunoprecipitation sequencing.
ORGANISM(S): Oryza sativa Indica Group 
2020-06-21 | E-MTAB-6982 | biostudies-arrayexpress
TranscriptomicsIllumina whole-genome bisulfite sequencing of Oryza sativa ssp. indica inbred control and epilines
The contained data consist of Illumina HiSeq reads generated genomic DNA of Oryza sativa ssp. indica used for WGBS analysis. The inbred control line and derived epilines LR1, LR2 and LR3 of the 4th selfing were analysed using whole-genome bisulfite sequencing. Control and LR2 lines can be found in A...
ORGANISM(S): Oryza sativa Indica Group 
2020-06-21 | E-MTAB-6981 | biostudies-arrayexpress
TranscriptomicsRNA sequencing of Oryza sativa ssp. indica of inbred and derived epilines
The contained data consist of Illumina HiSeq reads generated genomic RNA of Oryza sativa ssp. indica used for RNA-seq analysis. The inbred control line and derived epilines LR1, LR2 and LR3 of the 4th selfing were analysed using RNA-seq.
ORGANISM(S): Oryza sativa Indica Group 
2020-03-04 | E-MTAB-6983 | biostudies-arrayexpress
TranscriptomicsOryza sativa ssp. indica Illumina libraries of the method plant-RRBS used for methylome profiling
The contained data consist of Illumina HiSeq 2500 reads generated from restriction endonuclease digested genomic DNA of Oryza sativa ssp. indica used as proof of concept for plant-RRBS methylome profiling by bioinformatics analyses. Five biological repeats for an inbred control line and a derived ep...
ORGANISM(S): Oryza sativa Indica Group 
2017-12-14 | E-MTAB-4626 | biostudies-arrayexpress
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