Variant detection

Show results for

Unknown (4596)
Transcriptomics (1581)
Genomics (567)
Proteomics (141)
Metabolomics (19)
Other (14)
Genomic (3)
Methylation profiling (3)

Organisms

Homo sapiens (935)
Mus musculus (372)
Drosophila melanogaster (44)
Rattus norvegicus (41)
Arabidopsis thaliana (35)
Saccharomyces cerevisiae (33)
Sus scrofa (16)
Gallus gallus (15)
Caenorhabditis elegans (13)
Bos taurus (13)
Canis lupus familiaris (11)
Oryza sativa (9)
Danio rerio (8)
Staphylococcus aureus (8)
Schizosaccharomyces pombe (8)
Carassius auratus (6)
Glycine max (6)
Colinus virginianus (5)
Candida albicans (5)
Mycobacterium tuberculosis (5)
Xylella fastidiosa (4)
Fagus sylvatica (4)
Pseudomonas aeruginosa PAO1 (4)
Yersinia pestis (4)
Pimephales promelas (3)
Chlamydia trachomatis (3)
Macaca mulatta (3)
Drosophila simulans (3)
Zea mays (3)
Escherichia coli K-12 (3)

Organisms

Homo sapiens (102)
Mus musculus (9)
Severe acute respiratory syndrome coronavirus 2 (5)
Escherichia coli (3)
Infectious bursal disease virus (2)
Gracilariopsis lemaneiformis (2)
Human immunodeficiency virus 1 (2)
Caenorhabditis elegans (2)
Ovis aries (2)
Bacillus subtilis (2)
Bos taurus (2)
synthetic construct (2)
Hordeum bulbosum (1)
Hordeum pubiflorum (1)
Musa balbisiana (1)
Trypanosoma brucei brucei (1)
Salmonella enterica subsp. enterica serovar Agona (1)
Human immunodeficiency virus (1)
Arachis hypogaea subsp. hypogaea (1)
Mycobacterium tuberculosis variant bovis BCG (1)
Saccharomyces cerevisiae W303 (1)
Plasmodium falciparum 3D7 (1)
Ocimum tenuiflorum (1)
Myodes glareolus (1)
Mycobacterium tuberculosis variant bovis (1)
Persea americana (1)
Mycobacterium avium subsp. hominissuis (1)
Pseudomonas syringae pv. actinidiae (1)
Viruses (1)
Xenopus laevis (1)

Repository

biostudies-arrayexpress (1656)
ENA (406)
pride (91)
EGA (53)
geo (53)
MetaboLights (19)
MassIVE (11)
EVA (9)
PanoramaPublic (7)
PAXDB (6)
PeptideAtlas (6)
jPOST (5)
dbGaP (3)
iProX (2)
GPMDB (1)
NODE (1)

Tissue

Cell culture (21)
Epithelial cell (8)
Others (6)
Leaf (6)
Plant cell (6)
Brain (5)
Blood (4)
Blood plasma (4)
Skin (4)
Colon (3)
Endothelial cell (3)
Hair shaft (3)
Keratinocyte (3)
Lung (3)
B cell (2)
Blood cell (2)
Embryo (2)
Heart (2)
Liver (2)
Regular cardiac myocyte (2)
Testis (2)
Artery (1)
Blood platelet (1)
Cardiac muscle cell (1)
Cell lysate (1)
Cervical cancer cell line (1)
Corneocyte (1)
Embryonic cerebral cortex (1)
Embryonic kidney cell line (1)
Embryonic stem cell (1)

Disease

Normal (4)
Disease free (4)
Hemoglobinopathy (2)
Noonan syndrome (2)
Severe acute respiratory syndrome (2)
CLL (1)
HPV positive (1)
Osteosarcoma subtype fibroblastic (1)
High grade glioblastoma (1)
Alzheimer's disease (1)
Papillary Carcinoma (1)
Neuroepithelioma (1)
No lesions (1)
Challenged with Pieris rapae larvae (1)
Liposarcoma (1)
Infected (1)
Acute lymphoblastic leukemia (1)
IBDV infected (1)
Medulloblastoma (1)
Lung squamous cell carcinoma (1)
Prostate carcinoma (1)
Diabetes mellitus type 2 (1)
Breast cancer (1)
Not Available (1)
Abnormality of hair pigmentation (1)
Acute leukemia (1)
Axonal neuropathy (1)
Bleeding (1)
COVID-19 (1)
Cervical cancer (1)

Technology Type

Mass Spectrometry (91)
Shotgun proteomics (42)
Bottom-up proteomics (21)
Data-dependent acquisition (17)
Affinity purification coupled with mass spectrometry proteomics (15)
Mass spectrometry (13)
Gel-based experiment (8)
Mass spectrometry assay (6)
Chemical cross-linking coupled with mass spectrometry proteomics (4)
All-ion fragmentation (3)
Data-independent acquisition (3)
Top-down proteomics (3)
Illumina HiSeq 2000 (2)
SRM/MRM (2)
Illumina MiSeq, ILLUMINA (1)
Illumina HiSeq 2500, Illumina MiSeq, HiSeq X Ten (1)
Illumina HiSeq 2000, Ion Torrent PGM (1)
454 GS FLX Titanium (1)
Illumina HiSeq 2500 (1)
Illumina Genome Analyzer II (1)
NMR spectroscopy (1)
DiaPASEF (1)
Glycoproteomics (1)
Immunopeptidomics (1)
MSE (1)
Proteogenomics (1)
SWATH MS (1)

Instrument Platform

Illumina NovaSeq 6000 (21)
NextSeq 500 (14)
Illumina HiSeq 2000 (10)
Illumina HiSeq 4000 (5)
Illumina HiSeq 2500 (5)
PromethION (2)
ScanArray scanning hardware (2)
Agilent 2100 Bioanalyzer (2)
Illumina NovaSeq X (2)
HiSeq X Ten (2)
Illumina MiSeq (2)
Genechip Scanner 3000 7G (1)
Linux server, HPC cluster (1)
Not applicable in this study (1)
Thermal cycler (Bio-Rad C1000), Agilent 2100 Bioanalyzer, Qubit 4 Fluorometer (1)
Benchtop centrifuge, vortex, NanoDrop or plate reader (for RiboGreen assay), TapeStation (Agilent) (1)
Liquid nitrogen freezer, surgical instruments (1)
Unknown (1)
E.Z.N.A. Total RNA Kit I (Omega Bio-tek) (1)
GenePix 4200A (1)
Illumina Omni1-Quad Beadchip (1)
Agilent 2100 Bioanalyzer, Applied Biosystems 7900HT Sequence Detection System, Illumina TruSeq Small RNA Sample Preparation Kit (1)
RNeasy mini Kit, Ribo-Zero Human/Mouse/Rat kit (1)
GenePix 4000 (1)
10X Genomics Chromium (1)
IScan (1)
Genepix 4100A (1)
Agilent 2100 Bioanaylzer and ABI StepOnePlus Real-Time PCR System (1)
AB SOLiD 4 System (1)
GenePix Personal 4100A [Axon Instruments] (1)

Publication Date

2010 (290)
2013 (254)
2015 (245)
2011 (204)
2014 (189)
2012 (189)
2016 (82)
2008 (65)
2009 (58)
2025 (34)
2023 (34)
2024 (31)
2026 (30)
2022 (26)
2021 (24)
2020 (24)
2007 (21)
2019 (17)
2006 (12)
2018 (11)
2017 (8)
2005 (8)
2002 (3)
2004 (1)

UNIPROT ID/AC

1433B_MOUSE (5)
1433G_MOUSE (5)
1433S_MOUSE (5)
1433Z_MOUSE (5)
2A5A_MOUSE (5)
2A5E_MOUSE (5)
2AAA_MOUSE (5)
2AAB_MOUSE (5)
2ABA_MOUSE (5)
2ABD_MOUSE (5)
3HIDH_MOUSE (5)
4EBP1_MOUSE (5)
4EBP2_MOUSE (5)
4ET_MOUSE (5)
4F2_MOUSE (5)
6PGD_MOUSE (5)
6PGL_MOUSE (5)
A16A1_MOUSE (5)
A16L1_MOUSE (5)
AAGAB_MOUSE (5)
AAK1_MOUSE (5)
AAKB1_MOUSE (5)
AAMDC_MOUSE (5)
AAR2_MOUSE (5)
AATC_MOUSE (5)
AATF_MOUSE (5)
AATM_MOUSE (5)
ABCE1_MOUSE (5)
ABCF1_MOUSE (5)
ABCF2_MOUSE (5)

ENSEMBL ID

ENSG00000170477 (5)
ENSG00000147251 (2)
ENSG00000204131 (1)
ENSG00000247315 (1)

CHEBI ID

CHEBI:16704 (5)
CHEBI:17562 (4)
CHEBI:16750 (4)
CHEBI:16737 (4)
CHEBI:17992 (3)
CHEBI:30837 (3)
CHEBI:17802 (3)
CHEBI:17533 (3)
CHEBI:16708 (3)
CHEBI:16244 (3)
CHEBI:15428 (3)
CHEBI:17821 (3)
CHEBI:17154 (3)
CHEBI:16235 (3)
CHEBI:16335 (3)
CHEBI:18300 (3)
CHEBI:18012 (3)
CHEBI:32816 (3)
CHEBI:30915 (3)
CHEBI:17596 (3)
CHEBI:26078 (3)
CHEBI:17368 (3)
CHEBI:30769 (3)
CHEBI:39074 (2)
CHEBI:6367 (2)
CHEBI:101278 (2)
CHEBI:84527 (2)
CHEBI:29023 (2)
CHEBI:17072 (2)
CHEBI:16077 (2)

Metabolite Name

Inosine (4)
Glycine (3)
Uridine (3)
Thymine (3)
Guanosine (3)
Cytidine (3)
Sucrose (3)
Benzoic acid (3)
L-Arginine (3)
Taurine (3)
Ala-Gly (3)
L-Glutamine (3)
Adenine (3)
Uridine (3)
Creatinine (3)
L-Phenylalanine (3)
Hypoxanthine (3)
DL-tyrosine (2)
6'-sialyllactose (2)
DL-serine (2)
1-oleoyl-sn-glycero-3-phosphocholine (2)
2'-O-methyluridine (2)
N-acetylglucosaminylasparagine (2)
L-cystine (2)
Lactose (2)
Guanidinosuccinate (2)
3-hydroxykynurenine (2)
2-hydroxyglutaric acid (2)
Triethanolamine (2)
Xylose (2)

First Public Date

2026 (63)
2025 (48)
2023 (43)
2024 (40)
2022 (40)
2020 (32)
2021 (31)
2014 (25)
2019 (18)
2017 (17)
2013 (17)
2015 (15)
2018 (8)
2016 (8)
2012 (1)

Classification

viruses (14)
bacteria (9)
protozoa (3)

Modification

2x(15)N labeled L-lysine (1)
4x(15)N labeled L-arginine (1)
N6 (1)
N6-dimethyl-L-lysine (1)
Not available (1)

Study type

Transcription profiling by array (1083)
RNA-seq of coding RNA (112)
Methylation profiling by array (75)
ChIP-seq (71)
Comparative genomic hybridization by array (67)
Unknown experiment type (57)
ChIP-chip by tiling array (38)
Other (32)
RNA-seq of non coding RNA (20)
Genotyping by array (16)
Proteomic profiling by array (13)
Transcription profiling by tiling array (12)
RNA-seq of coding RNA from single cells (8)
ChIP-chip by array (6)
Transcription profiling by RT-PCR (6)
DNA-seq (6)
Methylation profiling by high throughput sequencing (6)
Transcription profiling by SAGE (4)
ChIP-chip by SNP array (2)
High-throughput sequencing (2)
Human - One-color microarray (2)
Cell line - High-throughput sequencing (2)
Bisulfite-seq (2)
Exome sequencing (2)
Ribo-seq (2)
MeDIP-seq (1)
Human - High-throughput sequencing (1)
RNAi profiling by array (1)
MicroRNA profiling by high throughput sequencing (1)
RIP-seq (1)

Release Date

2022 (704)
2023 (579)
2025 (517)
2021 (517)
2024 (443)
2015 (386)
2013 (345)
2010 (339)
2020 (329)
2014 (295)
2012 (257)
2019 (251)
2016 (249)
2011 (248)
2018 (234)
2017 (193)
2009 (88)
2008 (83)
2026 (67)
2007 (41)
2006 (25)
2005 (21)
2002 (9)
2003 (8)
2001 (8)
2004 (7)
2000 (5)
1999 (2)
1998 (2)

Lab affiliation

Leibniz Institute of Plant Biochemistry, Department Biochemistry of Plant Interactions, Weinberg 3, 06120 Halle (Saale), Germany (4)
Functional Proteomics, ICR (3)
Department of Environmental Toxicology, University of California, Davis, USA (2)
EMBL-EBI (2)
Forensic Science Center, Lawrence Livermore National Laboratory (2)
University Medicine Greifswald Department for Functional Genomics Felix-Hausdorff-Straße 8 17487 Greifswald (2)
1 German Cancer Consortium of Translational Cancer Research (DKTK) and German Cancer Research Center (DKFZ), Heidelberg, Germany 2 IIIrd Medical Department, Klinikum rechts der Isar, School of Medicine, Technical University of Munich, Munich, Germany 3 Center for Translational Cancer Research (TranslaTUM), School of Medicine, Technical University of Munich, Munich, Germany (1)
1. Peripheral Neuropathy Research Group, Department of Biomedical Sciences, University of Antwerp, Antwerp, Belgium 2. Laboratory of Neuromuscular Pathology, Institute Born Bunge, Antwerp, Belgium (1)
Adelaide Medical School Faculty of Health and Medical Sciences University of Adelaide (1)
Assistant Professor Department of Cellular and Molecular Medicine Florida International University | Herbert Wertheim College of Medicine (1)
Assistant Professor Department of Cellular and Molecular Medicine Florida International University | Herbert Wertheim College of Medicine (1)
Bioinformatics, TruDiagnostic, USA (1)
Biomedical Center Munich Molecular Biology Großhaderner Strasse 9 82152 Planegg-Martinsried (1)
Biomedical Research Institute of New Jersey (BRInj) 140 East Hanover Ave Cedar Knolls New Jersey 07927 (1)
CRG/UPF Proteomics Unit, Center for Genomics Regulation, Universitat Pompeu Fabra, 08003 Barcelona, Spain. (1)
Cellular and Molecular Pharmacology, UCSF, San Francisco, CA (1)
Center for Integrative Physiology and Molecular Medicine (CIPMM), Bld. 48, Saarland University (1)
Charité – Universitätsmedizin Berlin, Department of Biochemistry, 10117 Berlin, Germany (1)
Department of Biochemistry and Microbiology, Institute of Biology, Warsaw University of Life Scienc-es-SGGW, Poland (1)
Department of Biochemistry and Molecular Biophysics (1)
Department of Biochemistry, Purdue University, West Lafayette, IN 47907, USA (1)
Department of Biology University of Rochester Rochester, NY , USA (1)
Department of Biology, University of Konstanz, Germany (1)
Department of Biology, University of Konstanz, Universitaetsstrasse 10, 78457 Konstanz (1)
Department of Biosciences, Durham University Durham, UK (1)
Department of Cellular Biochemistry Institute for Biochemistry and Biotechnology Martin-Luther-University Halle-Wittenberg Kurt-Mothes-Str. 3 06120 Halle (Saale) (1)
Department of Chemistry, Imperial College London (1)
Department of Clinical Laboratory, National Center for Respiratory Medicine, National Clinical Research Center for Respiratory Disease, State Key Laboratory of Respiratory Disease, Guangzhou Institute of Respiratory Health, The First Affiliated Hospital of Guangzhou Medical University, Guangzhou, Guangdong 510120, China. (1)
Department of Genetics, Harvard Medical School, Boston, MA 02115 (1)
Department of Genetics, Stanford University (1)

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A comprehensive assessment of array-based platforms and calling algorithms for detection of copy number variants (Illumina_650Y)

Systematic evaluation of eleven array platforms commonly used for CNV detection to address parameters of quality and CNV calling. 18 Samples

ORGANISM(S): Homo sapiens

2011-06-30 | E-GEOD-28102 | biostudies-arrayexpress

A comprehensive assessment of array-based platforms and calling algorithms for detection of copy number variants (HumanOmni2.5-Quad)

Systematic evaluation of eleven array platforms commonly used for CNV detection to address parameters of quality and CNV calling. 14 Samples

ORGANISM(S): Homo sapiens

2011-06-30 | E-GEOD-28101 | biostudies-arrayexpress

A comprehensive assessment of array-based platforms and calling algorithms for detection of copy number variants (Human660W-Quad)

Systematic evaluation of eleven array platforms commonly used for CNV detection to address parameters of quality and CNV calling. 36 Samples

ORGANISM(S): Homo sapiens

2011-06-30 | E-GEOD-28103 | biostudies-arrayexpress

A comprehensive assessment of array-based platforms and calling algorithms for detection of copy number variants (HumanOmni1-Quad)

Systematic evaluation of eleven array platforms commonly used for CNV detection to address parameters of quality and CNV calling. 36 Samples

ORGANISM(S): Homo sapiens

2011-06-30 | E-GEOD-28104 | biostudies-arrayexpress

High-Throughput Detection of an Alkaloidal Plant Metabolome in Plant Extracts Using LC-ESI-QTOF-MS.

Plant alkaloids represent a diverse group of nitrogen-containing natural products. These compounds are considered valuable in drug discovery and development. High-throughput identification of such plant secondary metabolites in complex plant extracts is essential for drug discovery, lead optimizatio...

2023-12-12 | MTBLS2914 | MetaboLights

A comprehensive assessment of array-based platforms and calling algorithms for detection of copy number variants (GenomeWideSNP_6)

Systematic evaluation of eleven array platforms commonly used for CNV detection to address parameters of quality and CNV calling. 36 Samples

ORGANISM(S): Homo sapiens

2011-06-30 | E-GEOD-28111 | biostudies-arrayexpress

A comprehensive assessment of array-based platforms and calling algorithms for detection of copy number variants (NimbleGen 2.1M)

Systematic evaluation of eleven array platforms commonly used for CNV detection to address parameters of quality and CNV calling. 33 Samples

ORGANISM(S): Homo sapiens

2011-06-30 | E-GEOD-30312 | biostudies-arrayexpress

A comprehensive assessment of array-based platforms and calling algorithms for detection of copy number variants (Human1Mv1_C)

Systematic evaluation of eleven array platforms commonly used for CNV detection to address parameters of quality and CNV calling. 36 Samples

ORGANISM(S): Homo sapiens