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TranscriptomicsTime-course RNA-seq analysis of the barley MLA1 immune receptor-mediated response to barley powdery mildew fungus Bgh in Arabidopsis thaliana
We report that an intracellular NLR immune receptor from monocotyledonous barley is fully functional in dicotyledonous Arabidopsis thaliana. In contrast to common belief in plant NLR biology, this implies ~150 million years of evolutionary conservation of the underlying immune mechanism. This also s...
ORGANISM(S): Arabidopsis thaliana 
2012-11-22 | E-GEOD-39463 | biostudies-arrayexpress
TranscriptomicsMechanisms of age-dependent response to winter temperature in perennial flowering of Arabis alpina.
Transcriptomic profile of Arabis alpina apex enriched material. We compared apices from plants grown for 2 weeks in long days (20M-BM-0C) (juvenile) with apices from plants grown for 8 weeks in long days (20M-BM-0C) (adult) and apices from plants grown for 2 weeks and then shifted in vernalization f...
ORGANISM(S): Arabis alpina 
2013-05-27 | E-GEOD-40455 | biostudies-arrayexpress
TranscriptomicsTime course RNA-seq analysis of barley powdery mildew fungus Bgh infecting immunocompromised Arabidopsis thaliana
RNA-seq experiments detected fungal expression patterns during infection of immunocompromised Arabidopsis thaliana 3 biological replicates per condition. Arabidopsis plants without (pps) or with (B12) the MLA1-HA construct in pen2 pad4 sag101 background were challenged with either Bgh isolate K1 ex...
ORGANISM(S): Blumeria graminis f. sp. hordei 
2013-05-27 | E-GEOD-43163 | biostudies-arrayexpress
TranscriptomicsAMPK stimulation and PGC-1 alpha suppression in peroxisome deficient hepatocytes favor catabolic over anabolic carbohydrate metabolism
These arrays contain data from the livers of 10 week old L-Pex5 -/- male mice 6 arrays, 3 biological replicates
ORGANISM(S): Mus musculus 
2012-01-06 | E-GEOD-27720 | biostudies-arrayexpress
TranscriptomicsTranscription profiling of Arabidopsis or Thlaspi caerulescens roots exposed to deficient, sufficient or excess zinc
A common reference model was used to design the microarray experiment, in which cDNA from T. caerulescens roots exposed to 100 uM (sufficient) zinc was used as the common reference. Every slide was always hybridized with the common reference sample and with a sample from one of the treatments (Arabi...
ORGANISM(S): Thlaspi caerulescens 
2006-10-10 | E-MEXP-877 | biostudies-arrayexpress
TranscriptomicsTranscriptome of 4 developmental stages of Colletotrichum higginsianum during infection of Arabidopsis thaliana
Transcriptome of 4 developmental stages of Colletotrichum higginsianum during infection of Arabidopsis thaliana 3 biological replicates per stage. The four stages are : in vitro apressoria (VA), penetrating apressoria (AP), Biotrophic hyphea from the biotrophic phase (BH) and the switch from biotrop...
ORGANISM(S): Colletotrichum higginsianum 
2012-06-04 | E-GEOD-33683 | biostudies-arrayexpress
TranscriptomicsIndolic metabolites are required for antifungal defense of the Arabidopsis mlo2 mutant
Arabidopsis thaliana genes MLO2 (Mildew resistance locus-O 2), MLO6 and MLO12 exhibit unequal genetic redundancy with respect to the modulation of defense responses against powdery mildew fungi and the control of developmental phenotypes such as premature leaf decay. We show that early chlorosis and...
ORGANISM(S): Arabidopsis thaliana 
2010-01-03 | E-GEOD-17875 | biostudies-arrayexpress
TranscriptomicsInvolvement of the TGF-β and β-catenin pathways in pelvic lymph node metastasis in early stage cervical cancer
Purpose: Presence of pelvic lymph node metastases is the main prognostic factor in early stage cervical cancer patients, primarily treated with surgery. Aim of this study was to identify cellular tumor pathways associated with pelvic lymph node metastasis in early stage cervical cancer. Experimental...
ORGANISM(S): Homo sapiens 
2011-02-15 | E-GEOD-26511 | biostudies-arrayexpress
TranscriptomicsTranscription profiling by high throughput of Blumeria gramis during infection of Barley
The aim of this experiment was to investigate the transcriptomic variation within Blumeria graminis f. sp. hordei during infection of Barley. SOLiD RNA-seq data was generated for 6 samples, three from the epiphytic hyphae and three from the haustoria within the epidermis.
ORGANISM(S): Blumeria graminis 
2012-06-11 | E-MTAB-682 | biostudies-arrayexpress
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