Verma M M - OmicsDI

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Unknown (2288)
Transcriptomics (68)
Proteomics (53)
Genomics (22)
Metabolomics (4)
Models (2)
Genomic (1)

Organisms

Homo sapiens (57)
Aerococcus urinae NBRC 15544 = CCUG 36881 (45)
Andropogon gerardi (45)
Bacteria (45)
Bartonella quintana JK 31 (45)
Canis lupus familiaris (45)
Cnidaria (45)
Ectopseudomonas oleovorans CECT 5344 (45)
Ensifer adhaerens (45)
Halictus scabiosae (45)
Human immunodeficiency virus 1 (45)
Mesocricetus auratus (45)
Miscanthus x giganteus (45)
Morchella importuna (45)
Mus musculus (45)
Panicum virgatum (45)
Pseudomonas aeruginosa PA103 (45)
Pseudomonas aeruginosa SJTD-1 (45)
Rabies virus Nishigahara RCEH (45)
Rattus norvegicus (45)
Rattus rattus (45)
Rhodococcus jostii RHA1 (45)
Mus musculus (31)
Caenorhabditis elegans (2)
Oryza coarctata (1)
Catharanthus roseus (1)
Brassica napus (1)
mixed sample (1)
Arabidopsis thaliana (1)
Severe acute respiratory syndrome coronavirus 2 (1)

Repository

biostudies-arrayexpress (85)
pride (45)
EGA (5)
jPOST (3)
MetaboLights (3)
PanoramaPublic (3)
BioModels (2)
dbGaP (1)
GNPS (1)
iProX (1)
MassIVE (1)

Tissue

Cell culture (11)
Hepatocyte (4)
Blood (2)
Brain (2)
Epithelial cell (2)
Fibroblast (2)
Nasal lavage fluid (2)
Stem cell (2)
B cell (1)
Blood plasma (1)
Bone marrow (1)
Cell suspension culture (1)
Kidney (1)
Liver (1)
Lung (1)
MDA-MB-231 cell (1)
Milk (1)
Ovarian serous carcinoma cell (1)
Primary cell (1)
Seedling (1)
Sertoli cell (1)
Skin fibroblast (1)
T cell (1)
Type II pneumocyte (1)

Disease

COVID-19 (2)
Acinetobacter infectious disease (1)
Acute leukemia (1)
Age related macular degeneration (1)
Alveolar soft part sarcoma (1)
Disease free (1)
Glioblastoma (1)
Idiopathic pulmonary fibrosis (1)
Malignant neoplasm of ovary (1)
Metabolic dysfunction-associated steatotic liver disease (1)
Myelodysplastic syndrome (1)
Psoriasis (1)
Tuberculosis (1)
Urinary bladder cancer (1)
Zika fever (1)

Technology Type

Mass Spectrometry (45)
Shotgun proteomics (19)
Bottom-up proteomics (13)
Affinity purification coupled with mass spectrometry proteomics (9)
Data-dependent acquisition (3)
Mass spectrometry (2)
SWATH MS (2)
Mass spectrometry assay (1)
Data-independent acquisition (1)
Gel-based experiment (1)

Instrument Platform

Illumina NovaSeq X (2)
Illumina HiSeq 2500 (2)
Liquid Chromatography MS - positive - reverse phase (2)
Illumina iScan (1)
Illumina HiSeq X (1)
Illumina NovaSeq 6000 (1)
6550 iFunnel Q-TOF LC/MS (1)
Orbitrap Fusion Lumos (1)
Liquid Chromatography MS - (1)
Gas Chromatography MS - positive (1)
Liquid Chromatography MS - positive - reverse-phase (1)

Publication Date

2013 (22)
2012 (17)
2026 (14)
2014 (14)
2022 (11)
2016 (11)
2010 (9)
2024 (7)
2023 (7)
2021 (5)
2020 (5)
2019 (5)
2015 (4)
2018 (3)
2025 (3)
2011 (2)
2005 (1)
2007 (1)
2017 (1)

CHEBI ID

CHEBI:8832 (2)
CHEBI:173890 (2)
CHEBI:177599 (2)
CHEBI:182449 (2)
CHEBI:182253 (2)
CHEBI:182699 (2)
CHEBI:177514 (2)
CHEBI:177688 (2)
CHEBI:182667 (2)
CHEBI:1458 (2)
CHEBI:183730 (2)
CHEBI:41674 (2)
CHEBI:165502 (2)
CHEBI:177394 (2)
CHEBI:29735 (2)
CHEBI:168507 (2)
CHEBI:75457 (2)
CHEBI:64304 (2)
CHEBI:69081 (2)
CHEBI:17252 (2)
CHEBI:88595 (2)
CHEBI:75168 (2)
CHEBI:165595 (2)
CHEBI:167578 (2)
CHEBI:89871 (2)
CHEBI:172380 (2)
CHEBI:165178 (2)
CHEBI:75555 (2)
CHEBI:177477 (2)
CHEBI:174791 (2)

Metabolite Name

(-)-Rhododendrin (2)
(2E)-2-Tridecene-4,6,8-triyn-1-ol (2)
(2E,4E,12Z)-N-Isobutyl-2,4,12-octadecatrienamide (2)
(2R,3S,4S,5R,6R)-2-(hydroxymethyl)-6-(2-phenylethoxy)oxane-3,4,5-triol (2)
(2R,3S,4S,5S,6R)-2-({7-hydroxy-4-[(3Z)-5-hydroxy-3-methylpent-3-en-1-yl]-4a,8,8-trimethyl-3-methylidene-decahydronaphthalen-2-yl}oxy)-6-(hydroxymethyl)oxane-3,4,5-triol (2)
(2S)-2-Amino-8-hydroxyoctanoic acid (2)
(4E)-1,7-Bis(4-hydroxyphenyl)-4-hepten-3-one (2)
(9Z)-9-Octadecenamide (2)
(E)-Dacarbazine (2)
(E)-p-coumaric acid (2)
(Z)-3-butylidene-7-hydroxyphthalide (2)
[(4Z)-5-(Methylsulfanyl)-4-penten-2-yn-1-yl]benzene (2)
1,2-Cyclohexadione (2)
1,3,7-Octanetriol (2)
1,4-Anhydro-6-O-dodecanoyl-2,3-bis-O-(2-hydroxyethyl)-D-glucitol (2)
2-linoleoylglycerol (2)
1-Monopalmitoylglycerol (2)
1-Hexyl-2-methylbenzene (2)
1-Linoleoyl-sn-glycero-3-phosphocholine (2)
1-oleoyl-sn-glycero-3-phosphoethanolamine (2)
1-Tetradecylamine (2)
2-((2E)-3,7-Dimethyl-2,6-octadienyl)-5,6-dimethoxy-3-methyl-1,4-benzenediol (2)
2-(12-Tridecyn-1-yl)furan (2)
2,2,6,6-Tetramethyl-1-piperidinol (2)
2,3,4,9-Tetrahydro-1H-beta-carboline-1,3-dicarboxylic acid (2)
2,6-di-tert-butyl-4-ethylphenol (2)
1-[2,6-Dimethyl-4-(2-methyl-2-propanyl)-3,5-dinitrophenyl]ethanone (2)
Isobutyl benzoate (2)
3-Cyclooctyl-1,1-dimethylurea (2)
(9E,12E)-9,12-Octadecadienoic acid (2)

IsPrivate

False (2)

Modelling Approach

Ordinary differential equation model (2)

Modification

2x(15)N labeled L-lysine (1)
4x(15)N labeled L-arginine (1)

Study type

Transcription profiling by array (40)
RNA-seq of coding RNA (17)
ChIP-seq (14)
Methylation profiling by array (9)
Methylation profiling by high throughput sequencing (2)
DNA-seq (1)
RNA-seq of coding RNA from single cells (1)
RNA-seq of non coding RNA (1)

Release Date

2022 (317)
2025 (287)
2021 (281)
2023 (259)
2024 (232)
2020 (195)
2018 (137)
2019 (109)
2016 (97)
2017 (94)
2015 (67)
2014 (59)
2013 (58)
2012 (50)
2026 (42)
2011 (22)
2010 (19)
2009 (12)
2008 (11)
2007 (9)
2005 (5)
2006 (4)
2004 (3)
2003 (1)
2002 (1)
2001 (1)
2000 (1)

Lab affiliation

Proteomics Lab, 304, BSBE Department, Indian Institute Technology Bombay, Powai, Mumbai, India-400076 (3)
Center for Proteomics & Metabolomics, St. Jude Children's Research Hospital, Memphis, TN 38105, USA (2)
Chromosome and Plasmid Segregation Lab, Department of Biosciences and Bioengineering, IIT Bombay, Mumbai, India (2)
Functional Proteomics Laboratory, Regional Centre for Biotechnology, NCR Biotech Science Cluster, Faridabad, India (2)
RECAMO, Masaryk Memorial Cancer Institute Zluty Kopec, Brno, Czech Republic (2)
1 College of Medicine, Mohammed Bin Rashid University of Medicine and Health Sciences, Dubai, United Arab Emirates 2 School of Dentistry, Cardiff University, Cardiff, United Kingdom (1)
CEA-Marcoule, ProGenoMIX platform, DRF-Li2D, 30207 Bagnols-sur-Ceze, France (1)
Canada's Michael Smith Genome Sciences Centre, BC Cancer Agency, Vancouver V5Z 1L3, Canada (1)
Cancer Science Institute of Singapore (CSI), National University of Singapore (NUS) (1)
Center for Network Systems Biology, Boston University (1)
Chief Scientist, Professor and Head, Cancer Biology Division CSIR-Central Drug Research Institute & AcSIR, LSS-006 Jankipuram Extension, Lucknow 226031, India (1)
Chromosome and Plasmid Segregation Lab, Department of Biosciences and Bioengineering, IIT Bombay Mumbai, India (1)
Department of Biochemistry, Albert Einstein College of Medicine, Bronx, NY 10461, United States (1)
Department of Biosciences, Durham University Durham, UK (1)
Department of Biotechnology,Mithibai College,India (1)
Department of Laboratory Medicine and Pathology, Mayo Clinic, Rochester, MN 55905 (1)
Department of Physiology and Biophysics, University of Illinois at Chicago (1)
Department of Tropical Medicine, Medical Microbiology, and Pharmacology, John A. Burns School of Medicine, University of Hawaii at Manoa, Honolulu, HI, USA (1)
Edinburgh Cancer Research Centre, Cell Signalling Unit, University of Edinburgh (1)
Functional Proteomics Laboratory, Regional Centre for Biotechnology, NCR Biotech Science Cluster, Faridabad, India. (1)
Head of Proteomics & Metabolomics Facility (1)
ICAR-Central Institute for Research on Goats, Makhdoom, Farah, Mathura-281122 (1)
Ingrid Asp Psoriasis Research Center, Department of Biomedical and Clinical Sciences, Linköping University, Linköping, Sweden (1)
Institute of Bioinformatics, 7th floor, Discover Building, International Tech Park, Bangalore, India (1)
Institute of Bioinformatics, International Technology Park, Bangalore-560066, India (1)
Lee Kong Chian School of Medicine, Nanyang Technological University Singapore (1)
Molecular Genetics Laboratory, Infection and Immunology Division, Translational Health Science and Technology Institute, India (1)
Molecular virology, THSTI, NCR Biotech Science Cluster, Faridabad, India (1)
National Centre for Biomolecular Research Faculty of Science, Masaryk University Kamenice 753/5, 625 00 Brno, Czech Republic (1)
National Institute of Plant Genome Research, Aruna Asaf Ali Marg, New Delhi-110067 (1)

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Integrated multi-omic analysis of M. tuberculosis H37Ra redefines virulence attributes

M. tuberculosis H37Ra, an avirulent tubercle bacillus, is a commonly used model to investigate virulence attenuation in M. tuberculosis. Comparative high-throughput studies have earlier correlated its avirulence to the presence of specific mutations or absence of certain proteins. However, a recent ...

ORGANISM(S): Mycobacterium tuberculosis H37Ra

2018-10-22 | PXD008555 | Pride

ChIP-seq for CTCF and Rad21 in Rag1M-bM-^HM-^R/M-bM-^HM-^R pro-B cells

Genome-wide ChIP data of CTCF and Rad21 binding in Rag1M-bM-^HM-^R/M-bM-^HM-^R pro-B cells CTCF and Rad21 binding in Rag1M-bM-^HM-^R/M-bM-^HM-^R pro-B

ORGANISM(S): Mus musculus

2011-06-07 | E-GEOD-26257 | biostudies-arrayexpress

Expression, purification and crystallization of a lyssavirus matrix (M) protein.

Not available

S-EPMC2374255 | biostudies-literature

A spatially restricted fibrotic niche in pulmonary fibrosis is sustained by M-CSF/M-CSFR signalling in monocyte-derived alveolar macrophages.

Not available

S-EPMC6962769 | biostudies-literature

Multiple reaction monitoring based targeted validation of over-expressed proteins of high-grade gliomas

High-grade gliomas (HGGs) are extremely aggressive primary brain tumors with high mortality rates. Despite notable advancements in clinical research, HGGs are still characterized by poor prognosis and appalling survival rates. Several global proteomics studies have reported many protein biomarkers h...

ORGANISM(S): Homo Sapiens

PXD043621 | panorama

Whole genome transcription profile showing early changes in gene expression in antigen receptor activated B cells

To search for rapid changes in gene expression following BCR activation, we performed DNA microarray analysis of activated splenic B cells with and without anti-IgM treatment for 1 and 2 hour. Primary B-lymphocytes were purified from mouse spleens and stimulated with IL-4 (Pepro-Tech) and CD40L (R&D...

ORGANISM(S): Mus musculus

2012-07-10 | E-GEOD-35748 | biostudies-arrayexpress

CAMK2D recruits RNF8-MAD2 complex to RNA splicing proteins for mitotic checkpoint activation in GBM

Glioblastoma (GBM) is a lethal brain tumor with remarkable intra-tumoral heterogeneity and therapeutic resistance which is linked to glioma stem cell (GSC). GSC contains unstable genome and elevated genomic instability could impair GSC self-renewal and tumorigenicity. In addition, GSC displays great...

ORGANISM(S): Homo Sapiens (human)

2023-07-21 | PXD038123 | JPOST Repository

Proximal discrepancy in intrinsic atomic interaction arrests G2/M phase by inhibiting Cyclin B1/CDK1 to infer molecular and cellular biocompatibility of D-limonene.

Not available

S-EPMC9616896 | biostudies-literature

Targeting CREB Pathway Suppresses Small Cell Lung Cancer.

Not available

S-EPMC5932136 | biostudies-literature

Morphological, morphometrical, and molecular characterization of Metarhabditis amsactae (Ali, Pervez, Andrabi, Sharma and Verma, 2011) Sudhaus, 2011 (Rhabditida, Rhabditidae) from India and proposal of Metarhabditis longicaudata as a junior synonym of M. amsactae.

Not available

S-EPMC8015365 | biostudies-literature

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