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ProteomicsThreonine concentration effect on L. lactis growth
L. lactis was grown in steady-state cultures at specific growth rate 0.2 h-1. The concentration of L-threonine in the growth environment was smoothly increased from 1.24mM to 4mM and proteome measurements were carried out to detect proteins involved in threonine metabolism.
ORGANISM(S): Lactococcus lactis 
2015-03-19 | PXD001602 | Pride
Lactococcus lactis Silac Threonine metabolism 
ProteomicsSpecific growth rate-dependent proteome resource allocation dynamics in Escherichia coli
Cells usually respond to changing growth conditions with a change in the specific growth rate (μ) and adjustment of their proteome to adapt and maintain metabolic efficiency. Description of the principles behind proteome resource allocation is thus important for understanding metabolic regulation in...
ORGANISM(S): Escherichia coli 
2015-02-27 | PXD001594 | Pride
E. coli label-free specific growth rate dependent data 
ProteomicsE. coli BW25113 proteomics in nutrient-rich and minimal medium
E. coli BW25113 growth in a nutrient-rich medium supplemented with 20 proteinogenic amino acid medium was studied and compared to growth in minimal medium. Proteome data from these experiments revealed significant differences in amino acid synthesis and transport proteins that were reduced in the nu...
ORGANISM(S): Escherichia coli 
2020-02-18 | PXD011726 | Pride
E. coli rich medium 
UnknownThe design of unit cells by combining the self-reproduction systems and metabolic cushioning loads.
Not available
S-EPMC11830011 | biostudies-literature
UnknownSelf-reproduction and doubling time limits of different cellular subsystems.
Not available
S-EPMC10511633 | biostudies-literature
TranscriptomicsSpecific growth rate dependent transcriptome profiling of Escherichia coli K12 MG1655 in accelerostat cultures
Specific growth rate dependent gene expression changes of Escherichia coli K12 MG1655 were determined by microarray and real time PCR analyses. The bacteria were cultivated on glucose limited minimal medium using the accelerostat method (A-stat), where starting from steady state conditions in a chem...
ORGANISM(S): Escherichia coli 
2010-05-22 | E-GEOD-18183 | biostudies-arrayexpress
TranscriptomicsMulti-omics approach to study the growth efficiency and amino acid metabolism in Lactococcus lactis at various specific growth rates
Background Lactococcus lactis is recognised as a safe (GRAS) microorganism and has hence gained interest in numerous biotechnological approaches. As it is fastidious for several amino acids, optimization of processes which involve this organism requires a thorough understanding of its metabolic reg...
ORGANISM(S): Lactococcus lactis subsp. lactis Il1403 
2011-01-11 | E-GEOD-26536 | biostudies-arrayexpress
TranscriptomicsSystems biology approach reveals that overflow metabolism of acetate in Escherichia coli is triggered by carbon catabolite repression of acetyl-CoA synthetase
Background: The biotechnology industry has extensively exploited Escherichia coli for producing recombinant proteins, biofuels etc. However, high growth rate aerobic E. coli cultivations are accompanied by acetate excretion i.e. overflow metabolism which is harmful as it inhibits growth, diverts val...
ORGANISM(S): Escherichia coli str. K-12 substr. MG1655 
2010-09-02 | E-GEOD-23920 | biostudies-arrayexpress
OtherProteome reallocation in Escherichia coli with increasing specific growth rate
Data from ProteomeXchange, PXD ID: PXD001594. File: 130326_01_Orbi1_SK_SER_G250_T295_Piimhappe_BT_projekt_proov_F201_S2_P9.mzml. Published as part of Mol Biosyst. 2015 Feb 25 . From ProteomeXchange: {{i}} E. coli was grown on minimal and defined rich media in steady state continuous cultures at dif...
ORGANISM(S): Enterobacteria_phage_13a_uid30603, Enterobacteria_phage_933w_uid14043, Enterobacteria_phage_alpha3_uid14570, Enterobacteria_phage_ba14_uid30599, Enterobacteria_phage_bp_4795_uid14287, Enterobacteria_phage_bz13_uid14635, Enterobacteria_phage_cdti_uid19737, Enterobacteria_phage_ecods1_uid30601, Enterobacteria_phage_eps7_uid29287, Enterobacteria_phage_epsilon15_uid14285, Enterobacteria_phage_es18_uid15174, Enterobacteria_phage_felix_01_uid14323, Enterobacteria_phage_fels_2_uid32273, Enterobacteria_phage_fi_sensu_lato_uid15459, Enterobacteria_phage_g4_sensu_lato_uid14318, Enterobacteria_phage_hk022_uid14048, Enterobacteria_phage_hk620_uid14115, Enterobacteria_phage_hk97_uid14592, Enterobacteria_phage_i2_2_uid14572, Enterobacteria_phage_id18_sensu_lato_uid16628, Enterobacteria_phage_id2_moscow_id_2001_uid16591, Enterobacteria_phage_if1_uid14039, Enterobacteria_phage_ike_uid14627, Enterobacteria_phage_ime08_uid50177, Enterobacteria_phage_jk06_uid15569, Enterobacteria_phage_js10_uid38265, Enterobacteria_phage_js98_uid27983, Enterobacteria_phage_jse_uid38263, Enterobacteria_phage_k1e_uid16228, Enterobacteria_phage_k1f_uid15880, Enterobacteria_phage_k1_5_uid17059, Enterobacteria_phage_lambda_uid14204, Enterobacteria_phage_m13_uid14549, Enterobacteria_phage_min27_uid29143, Enterobacteria_phage_ms2_uid14659, Enterobacteria_phage_mu_uid14105, Enterobacteria_phage_n15_uid14086, Enterobacteria_phage_n4_uid18511, Enterobacteria_phage_p1_uid14493, Enterobacteria_phage_p22_uid14478, Enterobacteria_phage_p2_uid14035, Enterobacteria_phage_p4_uid14414, Enterobacteria_phage_phi1_uid20789, Enterobacteria_phage_phieco32_uid28729, Enterobacteria_phage_phiecom_gj1_uid27979, Enterobacteria_phage_phip27_uid14599, Enterobacteria_phage_phiv10_uid16381, Enterobacteria_phage_phix174_sensu_lato_uid14015, Enterobacteria_phage_prd1_uid14062, Enterobacteria_phage_psp3_uid14345, Enterobacteria_phage_rb14_uid37825, Enterobacteria_phage_rb16_uid51699, Enterobacteria_phage_rb32_uid17997, Enterobacteria_phage_rb43_uid15417, Enterobacteria_phage_rb49_uid14301, Enterobacteria_phage_rb51_uid37819, Enterobacteria_phage_rb69_uid15141, Enterobacteria_phage_rtp_uid16178, Enterobacteria_phage_sf6_uid14498, Enterobacteria_phage_sfv_uid14162, Enterobacteria_phage_sp6_uid14291, Enterobacteria_phage_ssl_2009a_uid34919, Enterobacteria_phage_st104_uid14499, Enterobacteria_phage_st64t_uid14230, Enterobacteria_phage_st_1_uid38669, Enterobacteria_phage_t1_uid14496, Enterobacteria_phage_t3_uid14336, Enterobacteria_phage_t4_uid14044, Enterobacteria_phage_t5_uid15143, Enterobacteria_phage_t7_uid14460, Enterobacteria_phage_tls_uid19775, Enterobacteria_phage_vt2_sakai_uid14480, Enterobacteria_phage_wa13_sensu_lato_uid16595, Enterobacteria_phage_wv8_uid38281, Enterobacteria_phage_yyz_2008_uid32231, Enterobacteriophage_qbeta_uid15479, Escherichia_coli_k_12_substr__dh10b, Escherichia_coli_k_12_substr__mg1655 
GPM32320007851 | GPMDB
Resource Reanalysis 
ProteomicsL.lactis - Whole organism, SC (Lahtvee,microbiology,2014)
abundance based on Spectral counting, Interaction consistency score: 11.2, Coverage: 49
ORGANISM(S): 272623 
2014-00-00 | 3365734308 | PAXDB
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