OmicsDI
Toggle navigation
Browse
Submit Data
Databases
API
Help
Advanced
Search
897
Results
Show all
Save search
Copy query
Show results for
Unknown
(396)
Transcriptomics
(245)
Genomics
(205)
Proteomics
(27)
Metabolomics
(19)
Clinical
(1)
Other
(1)
Organisms
Mus musculus
(40)
Homo sapiens
(38)
Arabidopsis thaliana
(37)
Saccharomyces cerevisiae
(26)
Glycine max
(15)
Drosophila melanogaster
(12)
Rattus norvegicus
(9)
Candida albicans
(8)
Clostridium acetobutylicum
(4)
Oryza sativa Japonica Group
(4)
Gallus gallus
(4)
Phaseolus coccineus
(3)
Campylobacter jejuni
(3)
Acetobacter aceti NBRC 14818
(3)
Gluconobacter oxydans 621H
(2)
synthetic construct
(2)
Vitis vinifera
(2)
Aedes aegypti
(2)
Triticum aestivum
(2)
Escherichia coli
(2)
Escherichia coli str. K-12 substr. MG1655
(2)
Sus scrofa
(2)
Clostridium acetobutylicum ATCC 824
(2)
Hypericum perforatum
(1)
Corylus avellana
(1)
Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819
(1)
Phaseolus vulgaris
(1)
Citrus x paradisi
(1)
Dianthus caryophyllus
(1)
Cocos nucifera
(1)
Organisms
food fermentation metagenome
(14)
fermentation metagenome
(6)
food metagenome
(5)
Acetobacter pasteurianus
(3)
Komagataeibacter europaeus
(2)
Komagataeibacter oboediens
(2)
Lactobacillus acetotolerans
(2)
Komagataeibacter europaeus LMG 18890
(2)
Drosophila melanogaster
(2)
mouse gut metagenome
(2)
Acetobacter aceti 1023
(1)
Thermoactinomyces daqus
(1)
Novacetimonas maltaceti
(1)
Acetobacter malorum
(1)
Acetobacter pomorum
(1)
Bacillus sp. TYF-LIM-B05
(1)
Rummeliibacillus sp. TYF005
(1)
Komagataeibacter oboediens 174Bp2
(1)
Komagataeibacter europaeus 5P3
(1)
Komagataeibacter europaeus LMG 18494
(1)
Acetobacter pasteurianus 3P3
(1)
Acetilactobacillus jinshanensis
(1)
Komagataeibacter europaeus NBRC 3261
(1)
Komagataeibacter xylinus NBRC 13693
(1)
Acetobacter aceti NBRC 14818
(1)
Acetobacter pasteurianus subsp. pasteurianus LMG 1262 = NBRC 106471
(1)
Acetobacter persici
(1)
Komagataeibacter saccharivorans
(1)
Novacetimonas hansenii
(1)
Tribolium castaneum
(1)
Repository
biostudies-arrayexpress
(249)
ENA
(197)
MassIVE
(19)
MetaboLights
(16)
geo
(8)
jPOST
(4)
pride
(4)
GNPS
(3)
Tissue
Root
(1)
Disease
Mitochondrial complex I deficiency
(2)
Normal
(2)
Low-stage neuroblastoma
(1)
Infected with IBDV strain F52/70
(1)
Invasive Ductal Carcinoma
(1)
Normal (control treated)
(1)
ARR1-SRDX
(1)
None- acute control
(1)
Squamous cell carcinoma
(1)
Familial adenomatous polyposis (FAP)
(1)
Barrett's esophagus
(1)
None- Acute Control
(1)
Normal (untreated)
(1)
Collagen induced arthritis
(1)
Gastroenterology Upper Gastro-Intestinal Cancer
(1)
Celiac disease
(1)
Technology Type
Mass spectrometry
(12)
NMR spectroscopy
(4)
Mass Spectrometry
(4)
Bottom-up proteomics
(2)
Mass spectrometry assay
(1)
Data-dependent acquisition
(1)
Gel-based experiment
(1)
Shotgun proteomics
(1)
Instrument Platform
NextSeq 500
(6)
Orbitrap Fusion
(5)
Axon- GenePix4000B
(3)
Scanning hardware
(3)
Illumina HiSeq 2500
(3)
Illumina NovaSeq 6000
(3)
Illumina HiSeq 4000
(3)
GenePix Personal 4100A [Axon Instruments]
(2)
GenePix 4000A [Axon Instruments]
(2)
Illumina MiSeq
(2)
NextSeq 550
(2)
Agilent 5977B, TripleTOF5600
(2)
SYNAPT G2-Si
(2)
Chromium™ Next GEM Single Cell 3′ Kit v3.1 (10X Genomics, PN-1000269)
(1)
454 GS FLX+
(1)
BAS-5000 [FUJIFILM]
(1)
Illumina Genome Analyzer IIx
(1)
418 [Affymetrix]
(1)
ScanArray Express HT [PerkinElmer]
(1)
N/A
(1)
DNBSEQ-G400
(1)
Illumina HiSeq 1500
(1)
Illumina HiSeq 2000
(1)
ABSciex
(1)
Q Exactive HF-X
(1)
LTQ Orbitrap
(1)
LTQ XL
(1)
Orbitrap Eclipse
(1)
Orbitrap Exploris 120
(1)
Orbitrap Exploris 480
(1)
Publication Date
2008
(32)
2011
(30)
2014
(26)
2013
(25)
2010
(23)
2012
(22)
2025
(14)
2016
(14)
2015
(14)
2007
(13)
2005
(12)
2023
(11)
2009
(11)
2022
(9)
2024
(8)
2006
(8)
2021
(6)
2020
(6)
2019
(5)
2026
(4)
2004
(4)
2017
(3)
2018
(1)
CHEBI ID
CHEBI:15366
(5)
CHEBI:15741
(4)
CHEBI:16997
(3)
CHEBI:27897
(3)
CHEBI:30769
(3)
CHEBI:87574
(2)
CHEBI:25094
(2)
CHEBI:22660
(2)
CHEBI:30751
(2)
CHEBI:16811
(2)
CHEBI:17170
(2)
CHEBI:28300
(2)
CHEBI:17533
(2)
CHEBI:25017
(2)
CHEBI:15428
(2)
CHEBI:28044
(2)
CHEBI:27266
(2)
CHEBI:17750
(2)
CHEBI:15891
(2)
CHEBI:16449
(2)
CHEBI:16135
(2)
CHEBI:30776
(2)
CHEBI:16737
(2)
CHEBI:16919
(2)
CHEBI:15354
(2)
CHEBI:20067
(2)
CHEBI:190293
(1)
CHEBI:63709
(1)
CHEBI:190292
(1)
CHEBI:74
(1)
Metabolite Name
Creatine
(6)
L-Threonine
(5)
L-Histidine
(4)
Choline
(4)
Creatinine
(4)
L-Phenylalanine
(4)
Pyruvic acid
(3)
D-Glucose
(3)
Propylene glycol
(3)
Uracil
(3)
Valine
(3)
Isobutyric acid
(3)
Acetic acid
(3)
L-Proline
(3)
Nonadecanoic acid
(3)
Methyldopa
(3)
Pyridoxamine
(3)
Uric acid
(3)
L-Serine
(3)
L-Tyrosine
(3)
Hypoxanthine
(3)
Menaquinone
(2)
Bitertanol
(2)
Hexanoic acid
(2)
L-Cystathionine
(2)
Atorvastatin
(2)
Acetoacetic acid
(2)
Minocycline
(2)
Gamma-Glutamylalanine
(2)
Trans-trans-Muconic acid
(2)
First Public Date
2022
(70)
2026
(19)
2024
(16)
2021
(15)
2025
(11)
2023
(11)
2020
(11)
2013
(10)
2019
(7)
2011
(6)
2016
(5)
2014
(5)
2018
(4)
2015
(4)
2017
(3)
Classification
bacteria
(1)
Study status
Completed
(1)
Study type
Transcription profiling by array
(185)
RNA-seq of coding RNA
(28)
ChIP-seq
(6)
Comparative genomic hybridization by array
(3)
MNase-seq
(2)
ChIP-chip by array
(2)
Transcription profiling by RT-PCR
(2)
Other
(2)
RNA-seq of coding RNA from single cells
(2)
Methylation profiling by high throughput sequencing
(2)
RNA-seq of non coding RNA
(2)
ChIP-chip by tiling array
(1)
Human - Single-cell sequencing
(1)
Human - High-throughput sequencing
(1)
Animal - High-throughput sequencing
(1)
Proteomic profiling by mass spectrometer
(1)
Genotyping by array
(1)
MicroRNA profiling by high throughput sequencing
(1)
Hi-C
(1)
ScATAC-seq
(1)
Methylation profiling by array
(1)
Interventional
(1)
Release Date
2023
(62)
2022
(59)
2025
(54)
2021
(48)
2024
(42)
2020
(36)
2008
(33)
2019
(31)
2011
(30)
2013
(29)
2014
(27)
2012
(25)
2016
(24)
2010
(24)
2018
(22)
2015
(21)
2017
(15)
2009
(15)
2007
(14)
2005
(12)
2026
(9)
2006
(8)
2004
(4)
2001
(1)
Lab affiliation
College of Mechanical and Electronic Engineering, Northwest A&F University, Yangling, Shaanxi 712100, China
(1)
Department of Agricultural Chemistry, Edaphology and Microbiology, Microbiology area, Severo Ochoa building (C6), Agrifood Campus of International Excellence ceiA3, University of Córdoba, Córdoba, Spain
(1)
Department of Inorganic Chemistry and Chemical Engineering, Chemical Engineering Area, Marie Curie Building (C3), Campus of Rabanales, Chemical Institute for Energy and Environment (IQUEMA), Agrifood Campus of International Excellence ceiA3, Universidad de Córdoba, Ctra. N-IV-A, Km 396, 14014, Córdoba, Spain
(1)
Technical University of Munich, TUM School of Life Sciences, Professorship of Food Biopolymer Systems, Lise-Meitner-Str. 34, 85354 Freising, Germany Leibniz Institute for Food Systems Biology at the Technical University of Munich, Lise-Meitner-Str. 34, 85354 Freising, Germany
(1)
Location
United Kingdom
(1)
Tags
xref:PubMed:26943920
(1)
xref:PubMed:36246236
(1)
xref:PubMed:21945372
(1)
xref:PubMed:40376962
(1)
xref:PubMed:31407135
(1)
xref:PubMed:21081762
(1)
pathogen
(1)
pathogen:bacterium
(1)
Previous
page
1 / 90
You're on page
1
page
2
page
3
page
4
page
5
page
...
page
90
Next
page
Sort
by:
Relevance
Page size
10
uncultured bacterium strain:sichuan bran vinegar | isolate:sichuan bran vinegar
Acetilactobacillus jinshanensis subsp. aerogenes strain: Sichuan bran vinegar | isolate: Sichuan bran vinegar Genome sequencing
PRJNA625165
|
ENA
Cite
Insights into the Composition and Function of Virus Communities During Acetic Acid Fermentation of Shanxi Aged Vinegar.
Not available
S-EPMC12428672
|
biostudies-literature
Cite
vinegar pei
vinegar pei Raw sequence reads
PRJNA987414
|
ENA
Cite
Vinegar fermentation
Vinegar fermentation Raw sequence reads
PRJNA1413417
|
ENA
Cite
vinegar pei
vinegar pei Genome sequencing
PRJNA743402
|
ENA
Cite
vinegar pei
vinegar pei Raw sequence reads
PRJNA743581
|
ENA
Cite
Characterization of acetic acid bacteria in traditional acetic acid fermentation of rice vinegar (komesu) and unpolished rice vinegar (kurosu) produced in Japan.
Not available
S-EPMC92679
|
biostudies-literature
Cite
Vinegar Daqu metagenomic sequencing
Vinegar Daqu metagenomic sequencing
PRJEB31509
|
ENA
Cite
Chinese traditional cereal vinegar
Chinese traditional cereal vinegar Raw sequence reads
PRJNA648475
|
ENA
Cite
Unraveling the metabolic network of organic acids in solid-state fermentation of Chinese cereal vinegar.
Not available
S-EPMC8358386
|
biostudies-literature
Cite
Previous
page
1 / 90
You're on page
1
page
2
page
3
page
4
page
5
page
...
page
90
Next
page
Sort
by:
Relevance
Page size
10
OmicsDI
is part of the ELIXIR infrastructure
OmicsDI is an Elixir interoperability service.
Learn more ›
Tweets