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Transcriptomics
(4748)
Proteomics
(446)
Metabolomics
(303)
Genomics
(283)
Unknown
(207)
Other
(20)
Models
(10)
Multiomics
(1)
Organisms
Arabidopsis thaliana
(2165)
Oryza sativa
(185)
Zea mays
(168)
Oryza sativa Japonica Group
(129)
Triticum aestivum
(128)
Glycine max
(108)
Solanum lycopersicum
(101)
Medicago truncatula
(92)
Hordeum vulgare
(81)
Homo sapiens
(78)
Solanum tuberosum
(70)
Vitis vinifera
(67)
Mus musculus
(45)
Oryza sativa Indica Group
(37)
Brassica napus
(33)
Gossypium hirsutum
(29)
Nicotiana tabacum
(28)
Populus trichocarpa
(22)
Populus tremula x Populus alba
(22)
Saccharomyces cerevisiae
(22)
Nicotiana benthamiana
(21)
Chlamydomonas reinhardtii
(18)
Brachypodium distachyon
(18)
Sinorhizobium meliloti
(18)
Citrus sinensis
(16)
Malus domestica
(14)
Salmo salar
(13)
Aspergillus fumigatus
(12)
Rhizobium leguminosarum
(11)
Lotus japonicus
(11)
Organisms
Viridiplantae
(6)
Viridiplantae environmental sample
(3)
Withania somnifera
(3)
Manihot esculenta
(3)
Pyrrosia heterophylla
(1)
Impatiens platysepala
(1)
Potentilla gageodoensis
(1)
Sinoswertia tetraptera
(1)
Thuja koraiensis
(1)
Carya cathayensis
(1)
Klebsormidium nitens
(1)
Siraitia grosvenorii
(1)
Lycium ruthenicum
(1)
Carica papaya
(1)
Hordeum vulgare
(1)
Chromochloris zofingiensis
(1)
Olea europaea
(1)
biofilm metagenome
(1)
marine plankton metagenome
(1)
Phaseolus vulgaris
(1)
endophyte metagenome
(1)
marine sediment metagenome
(1)
Repository
biostudies-arrayexpress
(4961)
MetaboLights
(287)
MassIVE
(234)
pride
(90)
PAXDB
(62)
jPOST
(59)
ENA
(58)
GNPS
(16)
iProX
(15)
EVA
(13)
FAIRDOMHub
(10)
geo
(6)
GPMDB
(6)
EGA
(2)
Tissue
Plant cell
(37)
Leaf
(22)
Seed
(9)
Root
(7)
Cell culture
(5)
Shoot
(4)
Cell suspension culture
(3)
Cotyledon
(3)
Embryo
(3)
Pollen
(3)
Stem
(3)
Flower bud
(2)
Fruit
(2)
Gametophyte
(2)
Latex
(2)
Photosynthetic cell
(2)
Stigma
(2)
Early embryonic cell
(1)
Endosperm
(1)
Flower
(1)
Fruit body
(1)
Gut cavity
(1)
Microspore
(1)
Nectar
(1)
Plant embryo
(1)
Plant stem cell
(1)
Skin
(1)
Spike
(1)
Stem cell
(1)
True leaf
(1)
Disease
Normal
(17)
Inoculated with P. syringae pv. tomato strain DC3000 + avrRps4
(1)
Wounded; tumour
(1)
Diseased
(1)
Not applicable
(1)
Blumeria graminis f.sp. Hordei inoculated
(1)
12 DAI with PepMV-EU isolate
(1)
No lesions
(1)
Challenged with Pieris rapae larvae
(1)
None
(1)
Blumeria graminis hordei (powdery mildew) inoculation
(1)
Cladosporium fulvum infected
(1)
Mock inoculated
(1)
Mock 24 h
(1)
1dpi
(1)
Mock infected
(1)
Pancreatic ductal adenocarcinoma
(1)
Xoo inoculated
(1)
Infected
(1)
Heterodera schachtii nematode infection
(1)
ARR7ox-4-11
(1)
Healthy
(1)
Oligodendroglioma
(1)
PMV infected
(1)
Represent tolerant CD4+ T cells that have not been activated
(1)
Metarhizium anisopliae infected
(1)
Phytophthora capsici infected
(1)
Monosporascus cannonballus infected
(1)
Resistant
(1)
HIV viral load > 750000 copies /ml
(1)
Technology Type
Mass spectrometry
(197)
Mass Spectrometry
(90)
Mass spectrometry assay
(81)
Shotgun proteomics
(50)
Gel-based experiment
(32)
Bottom-up proteomics
(7)
NMR spectroscopy
(6)
NMR spectroscopy assay
(4)
HDMSE
(4)
SWATH MS
(4)
Applied Biosystems 3100 automated sequencer-GeneMarker v.1.6 (Softgenetics)
(1)
All-ion fragmentation
(1)
Top-down proteomics
(1)
Instrument Platform
Illumina HiSeq 2000
(179)
Illumina NovaSeq 6000
(173)
Illumina HiSeq 2500
(82)
NextSeq 500
(69)
Illumina HiSeq 4000
(34)
Illumina HiSeq 3000
(29)
Illumina Genome Analyzer IIx
(23)
Axon GenePix 4000A scanning hardware
(17)
NextSeq 2000
(17)
ArrayWoRx Biochip Reader [Applied Precision]
(15)
Illumina MiSeq
(15)
Illumina Genome Analyzer II
(14)
Illumina HiSeq 1000
(14)
Agilent G2505B scanner
(13)
Illumina NovaSeq X
(13)
Illumina HiSeq 1500
(13)
BGISEQ-500
(13)
HiSeq X Ten
(11)
NextSeq 550
(11)
Axon- GenePix4000B
(10)
DNBSEQ-G400
(10)
Scanning hardware
(9)
418 [Affymetrix]
(7)
ScanArray scanning hardware
(6)
PromethION
(5)
AB SOLiD 4 System
(5)
DNA Microarray Scanner BA [Agilent Technologies]
(5)
G2565BA DNA microarray scanner [Agilent]
(5)
TruSeq RNA Sample Prep Kit
(5)
MinION
(5)
Publication Date
2014
(583)
2013
(524)
2010
(494)
2011
(477)
2012
(464)
2015
(443)
2008
(364)
2016
(290)
2009
(249)
2022
(201)
2025
(199)
2023
(180)
2026
(156)
2020
(133)
2007
(133)
2024
(131)
2021
(125)
2017
(117)
2019
(116)
2018
(101)
2006
(97)
2005
(84)
2004
(56)
2003
(10)
UNIPROT ID/AC
14332_ARATH
(15)
14333_ARATH
(15)
14337_ARATH
(15)
3HID1_ARATH
(15)
4CLLA_ARATH
(15)
6PGD2_ARATH
(15)
6PGD3_ARATH
(15)
6PGL3_ARATH
(15)
A0A1P8BG25_ARATH
(15)
A8MRW1_ARATH
(15)
AAT1_ARATH
(15)
AAT2_ARATH
(15)
AAT3_ARATH
(15)
AB4F_ARATH
(15)
AB6I_ARATH
(15)
ACAP1_ARATH
(15)
ACCA_ARATH
(15)
ACCD_ARATH
(15)
ACCO2_ARATH
(15)
ACLB1_ARATH
(15)
ACO1_ARATH
(15)
ACO3M_ARATH
(15)
ACR11_ARATH
(15)
ACS_ARATH
(15)
ACT7_ARATH
(15)
ADF3_ARATH
(15)
ADK1_ARATH
(15)
ADK2_ARATH
(15)
ADT1_ARATH
(15)
ADT2_ARATH
(15)
CHEBI ID
CHEBI:30769
(51)
CHEBI:18012
(45)
CHEBI:15741
(44)
CHEBI:28044
(43)
CHEBI:6650
(41)
CHEBI:17992
(37)
CHEBI:28300
(37)
CHEBI:15428
(36)
CHEBI:16335
(33)
CHEBI:18186
(32)
CHEBI:16865
(32)
CHEBI:27897
(32)
CHEBI:18237
(31)
CHEBI:22653
(30)
CHEBI:17234
(30)
CHEBI:16112
(30)
CHEBI:17268
(30)
CHEBI:26271
(29)
CHEBI:22660
(29)
CHEBI:26986
(29)
CHEBI:17521
(28)
CHEBI:17148
(28)
CHEBI:27266
(28)
CHEBI:15756
(28)
CHEBI:25094
(27)
CHEBI:26078
(27)
CHEBI:17822
(26)
CHEBI:16914
(26)
CHEBI:28757
(25)
CHEBI:28842
(25)
Metabolite Name
Sucrose
(40)
Adenosine
(39)
Adenine
(34)
L-Phenylalanine
(32)
Guanine
(31)
Hypoxanthine
(30)
Citric acid
(29)
Guanosine
(29)
Phenylalanine
(28)
Uridine
(28)
Uracil
(27)
Caffeic acid
(26)
L-Tryptophan
(26)
Choline
(25)
Proline
(25)
Azelaic acid
(25)
L-Tyrosine
(25)
Tyrosine
(24)
Cytosine
(24)
L-Glutamine
(24)
Salicylic acid
(23)
Tryptophan
(23)
Inosine
(23)
L-Proline
(22)
Benzoic acid
(22)
Coumarin
(22)
4-Hydroxybenzaldehyde
(22)
Oleamide
(22)
Raffinose
(22)
Cytidine
(22)
First Public Date
2025
(9)
2019
(9)
2022
(5)
2018
(5)
2017
(5)
2021
(4)
2020
(4)
2013
(4)
2024
(3)
2023
(3)
2026
(2)
2014
(2)
2016
(1)
2015
(1)
2012
(1)
Modification
15.994915
(1)
42.010565
(1)
57.021464
(1)
Study type
Transcription profiling by array
(3050)
RNA-seq of coding RNA
(1002)
RNA-seq of non coding RNA
(253)
ChIP-seq
(88)
Comparative genomic hybridization by array
(63)
Unknown experiment type
(62)
Methylation profiling by high throughput sequencing
(61)
DNA-seq
(57)
Transcription profiling by tiling array
(53)
ChIP-chip by tiling array
(44)
Plant - High-throughput sequencing
(41)
Other
(31)
Genotyping by high throughput sequencing
(27)
RNA-seq of total RNA
(21)
ChIP-chip by array
(16)
Methylation profiling by array
(14)
Transcription profiling by SAGE
(10)
Plant - One-color microarray
(10)
Bisulfite-seq
(7)
MicroRNA profiling by high throughput sequencing
(6)
High-throughput sequencing
(5)
MicroRNA profiling by array
(4)
Genotyping by array
(3)
RIP-seq
(3)
RNA-seq of coding RNA from single cells
(3)
Human - High-throughput sequencing
(2)
Cell line - High-throughput sequencing
(2)
ATAC-seq
(2)
Ribo-seq
(2)
Transcription profiling by array of Physcomitrella patens Reute development
(1)
Release Date
2014
(572)
2013
(532)
2010
(496)
2011
(492)
2012
(465)
2015
(432)
2008
(366)
2016
(280)
2009
(250)
2007
(138)
2022
(136)
2023
(101)
2006
(99)
2017
(98)
2025
(96)
2021
(90)
2020
(88)
2005
(86)
2026
(82)
2018
(67)
2024
(66)
2019
(66)
2004
(57)
2003
(11)
2001
(1)
2000
(1)
Lab affiliation
Laboratório de Biotecnologia, Centro de Biociências e Biotecnologia (CBB), Universidade Estadual do Norte Fluminense Darcy Ribeiro (UENF), Av. Alberto Lamego, Campos dos Goytacazes, RJ, Brazil. Unidade de Biologia Integrativa, Setor de Genômica e Proteômica, UENF, Campos dos Goytacazes, RJ, Brazil.
(3)
National Institute of Plant Genome Research, JNU Campus, Aruna Asaf Ali Marg, New Delhi-110067, India
(3)
College of Resources and Environment, Fujian Agricultural and Forestry University
(2)
College of Resources and Environment, Fujian Agriculture and Forestry University
(2)
Mass Spectrometry Laboratory, Institute of Biochemistry and Biophysics, Polish Academy of Sciences, Warsaw, Poland
(2)
North Carolina State University
(2)
Professor Deaprtment of Botany University of Delhi Delhi-110007
(2)
143 Food Industry Complex, Food Allergy Research and Resource Program, Department of Food Science and Technology, University of Nebraska-Lincoln , Lincoln, Nebraska 68583-0919, United States
(1)
ARC Training Centre for Advanced Technologies in Food Manufacture, School of Chemical Engineering, UNSW SYDNEY, NSW 2052, AUSTRALIA
(1)
Agricultural and Plant Biochemistry and Proteomics Research Group, Dept. of Biochemistry and Molecular Biology, University of Cordoba, Agrifood Campus of International Excellence (ceiA3), 14071 Cordoba, Spain
(1)
Agriculture and Agri-Food Canada, Canada
(1)
Agriculture and Agri-Food Canada, Ottawa Research and Development Centre.
(1)
Applied Science and Technology Department–BioSolar Lab, Politecnico di Torino,Italy
(1)
CHU de Besancon, Besancon, France
(1)
Center for Biotechnology & Biochemical Engineering Amity Institute of Biotechnology Amity University Uttar Pradesh Sector-125, Noida-201313 (U.P.) India
(1)
Centre for Research in Biotechnology for Agriculture(CEBAR),Universiti Malaya, Malaysia.
(1)
Centro de Investigacion Cientifica de Yucatan
(1)
Chapman University School of Pharmacy
(1)
Chemical & Biological Engineering, University of Sheffield, UK
(1)
China Agricultural University
(1)
College of Biomedical Engineering & Instrument Science, Zhejiang University
(1)
College of Biomedical Engineering & Instrument Science, Zhejiang University, Zheda Road 38, Hangzhou 310027, China
(1)
College of Life Sciences, Jiangsu Collaborative Innovation Center for Solid Organic Waste Resource, National Joint Local Engineering Research Center for Rural Land Resources Use and Consolidation, Nanjing Agricultural University
(1)
College of life sciences and technology,Guangxi University
(1)
Core Facility Mass Spectrometry BOKU, University of Natural Resources and Life Sciences, Vienna, Austria
(1)
Crop Research Institute, Prague, Czechia
(1)
Cryobiofrontier Research Center, Iwate University, Japan
(1)
Departamento de Ciencias Agrarias Y del Medio Natural, Universitat Jaume I, Campus Riu Sec, 12071 Castello de la Plana, Spain
(1)
Department Y centro: Plant Molecular Genetics, Spanish National Center of Biotechnology (CNB-CSIC).
(1)
Department of Biochemistry and Microbiology, Institute of Biology; Warsaw University of Life Sciences-SGGW
(1)
Tags
xref:PubMed:24593847
(1)
xref:PubMed:31437230
(1)
xref:PubMed:35599877
(1)
xref:PubMed:25349287
(1)
xref:PubMed:25534028
(1)
xref:PubMed:26067253
(1)
xref:PubMed:19367707
(1)
xref:PubMed:18977281
(1)
xref:PubMed:28434198
(1)
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Viridiplantae
Viridiplantae Genome sequencing
PRJNA1033169
|
ENA
Cite
Viridiplantae environmental sample
Viridiplantae environmental sample
PRJNA427661
|
ENA
Cite
Viridiplantae environmental sample
Viridiplantae environmental sample overview
PRJNA512325
|
ENA
Cite
Evolutionary aspects of the Viridiplantae nitroreductases.
Not available
S-EPMC7538488
|
biostudies-literature
Cite
Viridiplantae
Landscape configuration shapes bird-plant multilayer networks in urban green spaces: implications for urban biodiversity management
PRJDB37978
|
ENA
Cite
Viridiplantae
Characterization of xyloglucan glycosyltransferases in poplars for standing stems as land plants
PRJDB4761
|
ENA
Cite
Viridiplantae
Forest Tree Species Genome
PRJDB20739
|
ENA
Cite
Viridiplantae
Plumbago zeylanica Raw sequence reads
PRJNA451074
|
ENA
Cite
Viridiplantae breed:sporangium | cultivar:ferns
Viridiplantae breed:sporangium | cultivar:ferns Transcriptome or Gene expression
PRJNA503933
|
ENA
Cite
Phylotranscriptomics unveil a Paleoproterozoic-Mesoproterozoic origin and deep relationships of the Viridiplantae.
Not available
S-EPMC10495350
|
biostudies-literature
Cite
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