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TranscriptomicsLarge scale sequencing of viroid derived small RNA in Potato spindle tuber viroid infected tomato plants
In order to analyze the production of small RNA (sRNA) by viroids upon infecting the plants, the tomato plants (Lycopersicum esculentum cv. Rutgers) were inoculated with the variants of Potato spindle tuber viroid (PSTVd). After 21-days of post inoculation, total RNA was extracted and subjected for ...
ORGANISM(S): Solanum lycopersicum 
2015-05-27 | E-GEOD-69225 | biostudies-arrayexpress
TranscriptomicsIn depth sequencing of the siRNAs associated with peach latent mosaic viroid infection
Using a high-throughput sequencing approach we quantitatively analyzed the content of viroid-derived siRNAs of an infected tree. Our results show that the entire PLMVd genome is found in the siRNA population. Also both polarities are susceptible to be targeted by the RNAi machinery but specific regi...
ORGANISM(S): Prunus persica 
2010-02-20 | E-GEOD-18764 | biostudies-arrayexpress
TranscriptomicsPlant Viroid Detection Microarray
40mer probes were designed to detect plant viroids infection at the genus level. This microarray platform is able to detect a wide spectrum of all the 8 reported viroid genera, including 37 known plant viroid species. Viroid samples were extracted from infected plant hosts and plasmids. Total RNA wa...
ORGANISM(S): Viroids 
2013-12-31 | E-GEOD-44334 | biostudies-arrayexpress
TranscriptomicsInsight on genes affecting tuber development in potato upon Potato spindle tuber viroid (PSTVd) infection
Potato (Solanum tuberosum L) is a natural host of Potato spindle tuber viroid (PSTVd) which can cause characteristic symptoms on developing plants including stunting phenotype and distortion of leaves and tubers. PSTVd is the type species of the family Pospiviroidae, it can replicate in the nucleus ...
ORGANISM(S): Solanum tuberosum 
2016-02-01 | E-MTAB-3869 | biostudies-arrayexpress
GenomicsCitrus exocortis viroid isolate:CEVd-CY218
Citrus exocortis viroid isolate:CEVd-CY218 Genome sequencing
PRJNA491276 | ENA
GenomicsPotato spindle tuber viroid strain:intermediate
Potato spindle tuber viroid strain:intermediate
PRJNA1031346 | ENA
OtherPlant Viroid Detection Microarray
40mer probes were designed to detect plant viroids infection at the genus level. This microarray platform is able to detect a wide spectrum of all the 8 reported viroid genera, including 37 known plant viroid species.
ORGANISM(S): Columnea latent viroid Citrus dwarfing viroid Elaviroid Hop stunt viroid Avsunviroid unclassified viroids Tomato apical stunt viroid Tomato planta macho viroid Citrus exocortis viroid Pelamoviroid Coleus blumei viroid 1 Potato spindle tuber viroid Peach latent mosaic viroid Apscaviroid cicatricimali Avocado sunblotch viroid Chrysanthemum stunt viroid Hop latent viroid Chrysanthemum chlorotic mottle viroid Hostuviroid Pospiviroid Cocadviroid Apscaviroid Coleviroid 
2013-12-31 | GSE44334 | GEO
GenomicsPlant Viroid Detection Microarray
Plant Viroid Detection Microarray
PRJNA189479 | ENA
GenomicsPotato spindle tuber viroid strain:intermediate strain
Potato spindle tuber viroid strain:intermediate strain Raw sequence reads
PRJNA1050043 | ENA
TranscriptomicsEvolution of Potato spindle tuber viroid quasi-species during the course of disease in tomato plants
In order to verify the production of viroid specific small RNAs (vd-sRNA) by viroids upon infecting plants, the tomato plants (Lycopersicum esculentum cv. Rutgers) were inoculated with Potato spindle tuber viroid (PSTVd) variants. After 21-days of post inoculation, total RNA was extracted and subjec...
ORGANISM(S): Potato spindle tuber viroid 
2020-05-26 | GSE147577 | GEO
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