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GenomicsGenome-wide Analysis of Vitamin D Receptor Binding By ChIP-Seq
We used ChIP-Seq to identify the genomic locations bound by the vitamin D receptor (VDR) in two lymphoblastoid cell lines (LCLs) (CEPH individuals GM10855 and GM10861 from the International HapMap Project) before and after calcitriol treatment for 36 hours. Immunoprecipitated DNA was sequenced using...
ORGANISM(S): Homo sapiens 
2010-06-22 | E-GEOD-22484 | biostudies-arrayexpress
TranscriptomicsTranscription profiling of livers from 74-day old male rats fed vitamin A sufficient or vitamin A deficient diet for 53 days
Analysis of livers from 74-day old male rats fed vitamin A sufficient or vitamin A deficient diet for 53 days. Either 10ug or 2ug of total RNA used in standard Affymetrix protocol
ORGANISM(S): Rattus norvegicus 
2007-11-01 | E-GEOD-1600 | biostudies-arrayexpress
TranscriptomicsAnalysis of vitamin D response element binding protein target genes reveals a role for vitamin D in osteoblast mTOR signaling
Heterogeneous nuclear ribonucleoprotein (hnRNP) C1/C2 plays a pivotal role in vitamin D receptor (VDR) signaling by acting as a vitamin D response element (VDRE)-binding protein (VDRE-BP). Transcriptional regulation by active 1,25-dihydroxyvitamin D3 (1,25(OH)2D3) involves occupancy of VDRE by VDRE-...
ORGANISM(S): Homo sapiens 
2010-11-19 | E-GEOD-22523 | biostudies-arrayexpress
TranscriptomicsUnderstanding Vitamin D resistance using Nonsense Mediated Decay arrays
Vitamin D is the strongest known natural anti-proliferative. A large number of studies in a wide spectrum of cancers, including epidemiological, in vitro and animal models, demonstrate that the active form of Vitamin D has anti-cancer benefits, affecting both progression and metastasis. Alike the ro...
ORGANISM(S): Homo sapiens 
2008-06-01 | E-GEOD-9959 | biostudies-arrayexpress
TranscriptomicsVitamin D receptor (VDR) target genes in THP-1 monocytic leucemia cells
The biologically active form of vitamin D, 1,25-dihydroxyvitamin D3 (1,25(OH)2D3), is a direct regulator of gene transcription, since it is the only high affinity natural ligand of the transcription factor vitamin D receptor (VDR). Transcriptome-wide analysis of THP-1 human monocyte-like cells had i...
ORGANISM(S): Homo sapiens 
2015-04-26 | E-GEOD-60102 | biostudies-arrayexpress
ProteomicsVitamin D binding protein induces skeletal muscle atrophy and contributes to cancer-associated muscle wasting
The maintenance of skeletal muscle tissue is of pivotal importance in health and disease, as its loss is often associated with chronic or progressive pathologies, generally worsening the prognosis. Increased levels of vitamin D binding protein (VDBP) in biological samples were reported to co-occur w...
ORGANISM(S): Homo sapiens (Human) 
2026-02-20 | PXD042024 | Pride
Cancer Proteomics Vdbp Skeletal muscle atrophy 
TranscriptomicsGenome-wide analysis of vitamin D receptor (VDR) target genes in THP-1 monocytic leucemia cells
Identification of primary target genes of vitamin D receptor (VDR) in an immune-related cellular model (THP-1 cells) to study, in conjunction with VDR binding data from ChIP-seq, the genome-wide mechanisms of transcriptional regulation by VDR. THP-1 cells were treated 4 h either with 0.1% ethanol (v...
ORGANISM(S): Homo sapiens 
2011-08-16 | E-GEOD-27270 | biostudies-arrayexpress
GenomicsVitamin D binding protein in ventral CA3 of the hippocampus drives stress-induced depression
Vitamin D binding protein in ventral CA3 of the hippocampus drives stress-induced depression
PRJNA1377660 | ENA
TranscriptomicsEffects of vitamin A on ventricular myocardium gene expression [left ventricle]
LRAT knockout mice on vitamin A sufficient or deficient diets were compared to age and gender matched wildtype mice on a vitamin A sufficient diet RNA was isolated from the left ventricle of the heart and one array was run for each sample.
ORGANISM(S): Mus musculus 
2016-07-25 | E-GEOD-74904 | biostudies-arrayexpress
TranscriptomicsHuman Corneal Epithelial Cells (SV40-HCEC) 6h Treatment with 100nM Vitamin D (1,25D3) vs. Vehicle Control
Inflammatory signals must be regulated and kept in check in order to prevent tissue damage.  This is especially true in the cornea, where damage can induce loss of transparency, essential for vision.  Toll-like receptors (TLRs) are present at the ocular surface and, in addition to being protective...
ORGANISM(S): Homo sapiens 
2016-09-01 | E-GEOD-72663 | biostudies-arrayexpress
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