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TranscriptomicsChromatin immunoprecipitation of human cell line HepG2 with anti-Histone H3 acetyl K9/14, USF1 antibody, USF2 antibody and normal rabbit IgG
Whole genome ChIP-chip study using human liver cell line HepG2 and anti-Histone H3 acetyl K9/14 (06-599); USF1 antibody (H-86, sc-8983); USF2 antibody (C-20, sc-862) and normal rabbit IgG (12-370). Three completely independent biological replicates were performed for each antibody, obtaining the cor...
ORGANISM(S): Homo sapiens 
2007-11-30 | E-TABM-314 | biostudies-arrayexpress
TranscriptomicsChromatin immunoprecipitation of human HepG2 cells SREBP-1 and RNA polII in HepG2 on ENCODE arrays
Chromatin immunoprecipitation of SREBP-1 and RNA polII in HepG2 with detection on ENCODE arrays.
ORGANISM(S): Homo sapiens 
2009-02-16 | E-TABM-530 | biostudies-arrayexpress
ProteomicsA multi-omics approach to liver diseases: integration of Single Nuclei Transcriptomics with Proteomics and Hi-Cap Bulk Data in human liver
Abstract The liver is the largest solid organ and a primary metabolic hub. In recent years, intact cell nuclei were used to perform single-nuclei RNA-seq (snRNA-seq) for tissues difficult to dissociate and for flash-frozen archived tissue samples to discover unknown and rare cell sub-populations. In...
ORGANISM(S): Homo sapiens (Human) 
2020-12-21 | PXD017610 | Pride
Human liver single nuclei lcms 
UnknownSingle Nuclei Transcriptome Analysis of Human Liver with Integration of Proteomics and Capture Hi-C Bulk Tissue Data
Not available
S-BSST324 | biostudies-other
GenomicsNucleosome regulatory dynamics in response to TGF-beta treatment in HepG2 cells
We used ultra deep sequencing of MnaseI trated cells to faithfully position nucleosomes before and after treatment with TGFB growth factor for 1h in HepG2-cells.
ORGANISM(S): Homo sapiens 
2014-04-30 | E-MTAB-1750 | biostudies-arrayexpress
TranscriptomicsChromatin immunoprecipitation of human hepatocytes with H3ac or H4ac antibodies after treatment with sodium butyrate in order to
HepG2 cells were treated or untreated with Na-Butyrate and Chromatin immunoprecipitations were performed in order to investigate the genomic regions displaying changes in histone acetylation pattern (H3ac and H4ac) after treatment. Such ChIPs material were analyzed by ChIP-Chip, hybridizing ChIP DNA...
ORGANISM(S): Homo sapiens 
2006-06-16 | E-MEXP-693 | biostudies-arrayexpress
TranscriptomicsChromatin immunoprecipitation of human cell line HEPG2 to identify liver specific transcription factor binding sites
Identification of liver transcription factors binding sites by ChIP-chip using HepG2 cells. Inference of binding sites at base pair resolution was achieved by using bioinformatic tools on the generated data sets.
ORGANISM(S): Homo sapiens 
2005-10-01 | E-MEXP-452 | biostudies-arrayexpress
TranscriptomicsTotal RNA expression in response to TGF-beta treatment in HepG2 cells
We used RNA-sequencing to examine expression patterns before and after treatment with TGFB growth factor for 1h in HepG2-cells.
ORGANISM(S): Homo sapiens 
2014-04-30 | E-MTAB-1819 | biostudies-arrayexpress
TranscriptomicsChromatin immunoprecipitation to study histone 3 modifications in 2 patients (colorectal cancer and normal tissue) and 1 cell line (HT29) on promoter arrays
Chromatin immunoprecipitation (ChIP-chip) study of histone 3 modifications (K4/K27) of 2 patients (colorectal cancer and normal tissue) and 1 cell line (HT29) on promoter arrays.
ORGANISM(S): Homo sapiens 
2010-06-30 | E-TABM-533 | biostudies-arrayexpress
TranscriptomicsChromatin immunopreciptation of H3K27me3 in human colorectal cancer samples
Histone H3 lysine 27 trimethylation in adult differentiated colon associated to cancer DNA hypermethylation
ORGANISM(S): Homo sapiens 
2009-03-18 | E-TABM-629 | biostudies-arrayexpress
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