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TranscriptomicsComparative analysis of D. shibae wild-type vs. delta-luxI1 supplemented with different acetylated homoserine-lactones
Comparison of a quorum sensing null mutant supplemented with C18-HSL, C18en-HSL, C18dien-HSL with D. shibae wild-type in order to identify traits induced by distinct autoinducers in this organism. Loop-design, two to three biological replicates of D. shibae wild-type, delta-luxI1 and delta-luxI1 sup...
ORGANISM(S): Dinoroseobacter shibae DFL 12 
2012-11-03 | E-GEOD-42010 | biostudies-arrayexpress
TranscriptomicsCell-density resolved comparative analysis of D. shibae wild-type vs. delta-luxI1
A quorum sensing null mutant was compared with D. shibae wild-type in order to identify quorum sensing controlled traits in this organism. Samples were taken at different optical densities in the exponential phase and in the stationary phase in order to clarify if quorum sensing regulation is depend...
ORGANISM(S): Dinoroseobacter shibae DFL 12 
2012-11-03 | E-GEOD-42011 | biostudies-arrayexpress
TranscriptomicsComparative analysis of D. shibae wild-type vs. M-bM-^HM-^FluxI1 supplemented with acetylated homoserine-lactones with different length of the side chain and modifications
Comparison of a quorum sensing null mutant supplemented with AHLs with different length of the side chain and modifications with D. shibae wild-type in order to identify traits induced by distinct autoinducers in this organism. Loop-design, two to three biological replicates of D. shibae wild-type, ...
ORGANISM(S): Dinoroseobacter shibae DFL 12 = DSM 16493 
2014-04-01 | E-GEOD-54420 | biostudies-arrayexpress
TranscriptomicsCell-density resolved comparative analysis of D. shibae wild-type vs. delta-luxI1 overexpressing luxI1 in trans
D. shibae delta-luxI1 overexpressing the luxI1 gene in trans was compared to the wild-type in order to identify quorum sensing controlled traits in this organism. Samples were taken at different optical densities in the exponential phase and in the stationary phase. Samples from Dinoroseobacter shib...
ORGANISM(S): Dinoroseobacter shibae DFL 12 
2012-11-03 | E-GEOD-42012 | biostudies-arrayexpress
ProteomicsHemileia_vastatrix_descriptive analysis
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ORGANISM(S): Hemileia Vastatrix (ncbitaxon:203904) 
2021-06-19 | MSV000087665 | MassIVE
TranscriptomicsCigarette smoke exposure of human organotypic cultures of buccal and gingival mucosa
Oral mucosa of smokers is subject to cigarette smoke (CS)-related cytological, genomic, and transcriptional changes that could potentially lead to the development of mouth diseases. In order to further characterize CS effects, we took advantage of two human organotypic in vitro models of the buccal ...
ORGANISM(S): Homo sapiens 
2014-08-30 | E-MTAB-2251 | biostudies-arrayexpress
TranscriptomicsTranscription profiling of HUVEC infected with recombinant adenoviruses expressing EGR-1 or empty control viruses at a MOI of 100. RNA was isolated from the cells at the time points 16 h, 24 h and 48 h post infection
The target genes of the transcription factor early growth response-1 (EGR-1) were studied in human umbilical vein endothelial cells (HUVEC). Densely cultured HUVEC were infected with recombinant adenoviruses expressing EGR-1 or empty control viruses at a MOI of 100. RNA was isolated from the cells a...
ORGANISM(S): Homo sapiens 
2007-10-27 | E-GEOD-2299 | biostudies-arrayexpress
ProteomicsScreening of protein carbonylation sites in human serum by ion mobility mass spectrometry
Excessive oxidative stress, which is associated with several diseases, can trigger oxidative protein modifications, including protein carbonylation, which refers to the oxidative formation of aldehyde or keto groups in proteins. The structural diversity of these non-enzymatic reactive carbonyl group...
ORGANISM(S): Homo Sapiens 
PXD058666 | panorama
MetabolomicsMetaboKit: a comprehensive data extraction tool for untargeted metabolomics (Mouse liver assays)

We have developed MetaboKit, a comprehensive software package for compound identification and relative quantification in mass spectrometry-based untargeted metabolomics analysis. In data dependent acquisition (DDA) analysis, MetaboKit constructs a customized spectral library with compound identit...

2021-11-02 | MTBLS1266 | MetaboLights
MetabolomicsMetaboKit: a comprehensive data extraction tool for untargeted metabolomics (Standard mixture assay)

We have developed MetaboKit, a comprehensive software package for compound identification and relative quantification in mass spectrometry-based untargeted metabolomics analysis. In data dependent acquisition (DDA) analysis, MetaboKit constructs a customized spectral library with compound identit...

2021-11-05 | MTBLS1311 | MetaboLights
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