Wang De Ming M - OmicsDI

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Unknown (85)
Transcriptomics (17)
Genomics (12)
Proteomics (7)
Metabolomics (7)
Multiomics (1)

Organisms

Homo sapiens (18)
Mus musculus (3)
Oryza sativa (2)
Arabidopsis thaliana (2)
Beauveria bassiana ARSEF 2860 (1)
Prunus armeniaca (1)
Musa acuminata (1)
Physcomitrium patens (1)
Oryza sativa Japonica Group (1)
Rattus norvegicus (1)
Danio rerio (1)
Elaphe taeniura (1)
Trichinella pseudospiralis (1)

Repository

biostudies-arrayexpress (17)
EGA (12)
MetaboLights (7)
pride (3)
iProX (2)
MassIVE (2)

Tissue

Plant cell (1)
T cell (1)
Whole body (1)

Disease

Melanoma (1)

Technology Type

Mass spectrometry (7)
Mass Spectrometry (3)
AB SOLiD 4 System, Illumina HiSeq 2500, Illumina HiSeq 2000, AB SOLiD System 3.0 (1)
Affinity purification coupled with mass spectrometry proteomics (1)
Gel-based experiment (1)
Shotgun proteomics (1)
Top-down proteomics (1)

Instrument Platform

Liquid Chromatography MS - positive - reverse phase (4)
Liquid Chromatography MS - negative - reverse phase (3)
LTQ Orbitrap Elite (2)
Gas Chromatography MS - positive (2)
Illumina NovaSeq 6000 (1)
Illumina HiSeq 4000 (1)
Flow injection analysis MS - (1)
MS Imaging - (1)

Publication Date

2012 (5)
2013 (4)
2022 (3)
2016 (3)
2019 (2)
2025 (2)
2023 (2)
2021 (2)
2015 (1)
2011 (1)
2008 (1)
2007 (1)
2005 (1)
2024 (1)
2014 (1)
2018 (1)

CHEBI ID

CHEBI:17987 (2)
CHEBI:27961 (2)
CHEBI:28897 (2)
CHEBI:3440 (2)
CHEBI:35998 (2)
CHEBI:49000 (2)
CHEBI:4917 (2)
CHEBI:4918 (2)
CHEBI:50158 (2)
CHEBI:53177 (2)
CHEBI:86562 (2)
CHEBI:10070 (1)
CHEBI:10221 (1)
CHEBI:10278 (1)
CHEBI:10353 (1)
CHEBI:113532 (1)
CHEBI:131333 (1)
CHEBI:132295 (1)
CHEBI:132824 (1)
CHEBI:132837 (1)
CHEBI:132905 (1)
CHEBI:133077 (1)
CHEBI:133086 (1)
CHEBI:134837 (1)
CHEBI:135101 (1)
CHEBI:135150 (1)
CHEBI:135204 (1)
CHEBI:135425 (1)
CHEBI:138564 (1)
CHEBI:141217 (1)

Metabolite Name

Benzyl alcohol (2)
Eucalyptol (2)
Eugenol (2)
Methyleugenol (2)
Pentadecane (2)
Tridecane (2)
(+)-(3,3''-bi-4H-1-benzopyran)-4,4''-dione,2,2'',3,3''-tetrahydro-5,5'',7''-trihydroxy-7-methoxy-2-(4-methoxyphenyl)-2''-(4-hydroxyphenyl) (1)
(+)-Medioresinol (1)
(+)-zuonin A (1)
(+-)-9-(2-Cyanoethyl)dihydrozeatin (1)
(+/-)-oxiran-2-ylmethyl (9Z)-hexadec-9-enoate (1)
(-)-Amurensisin (1)
(-)-Aristolene (1)
(-)-Aristolene isomer (1)
(-)-Epicatechin(4.beta.-->8)(-)-epigallocatechin (1)
(-)-Globulol (1)
(-)-cis-sabinol (1)
(-)-yatein (1)
(1-methyl-5-nitroimidazol-2-yl)methyl N-[1-[(2R,3S,4S,5R)-3,4-dihydroxy-5-(hydroxymethyl)oxolan-2-yl]-2-oxopyrimidin-4-yl]carbamate (1)
(10S,13R,14R,16R,17R)-16-hydroxy-17-[(2R)-1-hydroxy-6-methylhept-5-en-2-yl]-4,4,10,13,14-pentamethyl-1,2,5,6,7,11,12,15,16,17-decahydrocyclopenta[a]phenanthren-3-one (1)
(1E)-1-[2,2,4-trimethyl-3-[(1E,3E,5E,7E,9E)-3,7,12-trimethyltrideca-1,3,5,7,9,11-hexaenyl]cyclohex-3-en-1-ylidene]propan-2-one (1)
(1E,3E,5E,7E,9E,11E,13E,15Z)-1-[(2R,4S)-2,4-dihydroxy-2,6,6-trimethylcyclohexylidene]-16-(hydroxymethyl)-18-[(4R)-4-hydroxy-2,6,6-trimethylcyclohexen-1-yl]-3,7,12-trimethyloctadeca-3,5,7,9,11,13,15-heptaen-17-yn-2-one (1)
(1E,4E)-1-(3,4-dimethoxyphenyl)-5-(4-hydroxy-3-methoxyphenyl)penta-1,4-dien-3-one (1)
(1E,6E)-1-(4-hydroxy-3-methoxyphenyl)-7-(2-hydroxyphenyl)hepta-1,6-diene-3,5-dione (1)
(1R)-3,5,5-trimethyl-4-[(3E,5E,7E,9E,11E,13E,15E,17E)-3,7,12,16-tetramethyl-18-(2,6,6-trimethylcyclohexen-1-yl)octadeca-3,5,7,9,11,13,15,17-octaen-1-ynyl]cyclohex-3-en-1-ol (1)
(1R,2R,3S,4S)-4-(2-hydroxyethyl)-2,3-bis(phenylmethoxymethyl)cyclopentan-1-ol (1)
(1R,2R,4S,4aS,6aS,6aS,6bR,12aS,14bS)-1,4,11-trihydroxy-1,2,6a,6b,9,12a-hexamethyl-10-oxo-2,3,4,5,6,6a,7,8,13,14b-decahydropicene-4a-carboxylic acid (1)
(1R,2R,4aS,6aR,6aS,6bR,8R,8aR,10S,12aR,14bS)-1,8,10-trihydroxy-1,2,6a,6b,12a-pentamethyl-9-methylidene-2,3,4,5,6,6a,7,8,8a,10,11,12,13,14b-tetradecahydropicene-4a-carboxylic acid (1)
(1R,2R,4aS,6aR,6aS,6bR,8aR,10S,11R,12aR,14bS)-1,10,11-trihydroxy-1,2,6a,6b,12a-pentamethyl-9-methylidene-2,3,4,5,6,6a,7,8,8a,10,11,12,13,14b-tetradecahydropicene-4a-carboxylic acid (1)
(1R,2S,4S,4aS,8aS)-4a,8,8-trimethyl-1,2,3,4,5,6,7,8a-octahydronaphthalene-1,2,4-triol (1)

Study type

Transcription profiling by array (8)
RNA-seq of coding RNA (3)
RNA-seq of non coding RNA (2)
Transcription profiling by SAGE (1)
Unknown experiment type (1)
Comparative genomic hybridization by array (1)
Genotyping by high throughput sequencing (1)

Release Date

2025 (17)
2023 (12)
2022 (10)
2024 (9)
2012 (7)
2021 (7)
2013 (5)
2016 (4)
2015 (4)
2020 (4)
2019 (4)
2014 (4)
2008 (3)
2011 (2)
2026 (2)
2018 (2)
2017 (2)
2010 (2)
2007 (1)
2005 (1)

Lab affiliation

Agricultural Biotechnology Research Center, Academia Sinica, Taiwan (1)
Key Laboratory of Zoonosis Research, Ministry of Education, Institute of Zoonosis/ College of Veterinary Medicine,Jilin University, Changchun, China. (1)
Tumor Biology Department Molecular Medicine Program Moffitt Cancer Center Tampa, FL, USA (1)

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Complete Taiwanese Macaque (Macaca cyclopis) Mitochondrial Genome: Reference-Assisted de novo Assembly with Multiple k-mer Strategy.

Not available

S-EPMC4488429 | biostudies-literature

The Relative Content and Distribution of Absorbed Volatile Organic Compounds in Rats Administered Asari Radix et Rhizoma Are Different between Powder- and Decoction-Treated Groups

Asari Radix et Rhizoma (ARR) is an important traditional Chinese medicine. Volatile organic compounds (VOCs) are the main active constituents of ARR. Research on the metabolite profile of VOCs and the difference of absorbed constituents in vivo after an administration of ARR decoction and powder wil...

2021-02-01 | MTBLS2053 | MetaboLights

Immunoproteomic analysis of the excretory-secretory products of the Trichinella pseudospiralis adult worms and newborn larvae

In this study, we used Two-dimensional gel electrophoresis (2-DE)-based Western blotting coupled with MALDI-TOF / TOF-MS / MS to separate and identify the T. pseudospiralis adult worms (Ad) ES products immunoreaction-positive proteins. In total, 400 protein spots were separated by 2-DE. 28 protein s...

ORGANISM(S): Trichinella pseudospiralis

2018-11-22 | PXD007783 | Pride

Dendritic Spine in Autism Genetics: Whole-Exome Sequencing Identifying De Novo Variant of CTTNBP2 in a Quad Family Affected by Autism Spectrum Disorder.

Not available

S-EPMC9856540 | biostudies-literature

UPLC-MS-Based Serum Metabolic Profiling Reveals Potential Biomarkers for Predicting Propofol Responsiveness in Females

Although previous studies have shown that certain factors interfere with the sensitivity of propofol, the mechanisms for interindividual variability in response to propofol remain unclear. This study aimed to screen the metabolites to predict patients' sensitivity to propofol and to identify meta...

2021-09-29 | MTBLS2311 | MetaboLights

Analysis of the Argonaute 4-associated non-coding RNA in Arabidopsis thaliana sheds novel insights into gene regulation through RNA-directed DNA methylation

RNA-directed DNA methylation (RdDM) is a de novo DNA methylation mechanism in plants that plays a fundamental role in plant defence against invasive DNA and in maintaining genome stability by silencing transposons and repetitive sequences. Using nuclear RNA immunoprecipitation, we constructed a high...

ORGANISM(S): Arabidopsis thaliana

2016-07-01 | E-GEOD-48617 | biostudies-arrayexpress

Randomized trial of bilateral gene therapy injection for m.11778G>A MT-ND4 Leber optic neuropathy.

Not available

S-EPMC10115230 | biostudies-literature

Bbssk1 dependent gene expression in Beauveria bassiana

Ssk1-type response regulator proteins are the core elements of histidine-to-aspartate systems that mediate fungal stress tolerance, a determinant to the biocontrol potential of fungal entomopathogens. We characterized for the first time the functions of Beauveria bassiana Ssk1 (Bbssk1) by analyzing ...

ORGANISM(S): Beauveria bassiana ARSEF 2860

2012-08-21 | E-GEOD-40229 | biostudies-arrayexpress

Novel Lung Cancer-Related Genes Identified by a Non-Gapped Array-Comparative Genomic Hybridization Microarray in Asian and Caucasian Populations

This study constructed a non-gapped bacterial artificial chromosomes (BAC) array containing 3604 BAC clones covering 18 lung cancer-related chromosome imbalance hotspot regions. Using this specialized array, DNA from tumor and normal tissues of 40 Asian and 20 Caucasian non-small cell lung cancer (N...

ORGANISM(S): Homo sapiens

2012-07-24 | E-GEOD-21276 | biostudies-arrayexpress

Microarray meta-analysis database (M(2)DB): a uniformly pre-processed, quality controlled, and manually curated human clinical microarray database.

Not available

S-EPMC2928207 | biostudies-literature

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