Wang Sa A SA - OmicsDI

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Unknown (6035)
Proteomics (234)
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Metabolomics (36)
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Homo sapiens (210)
Mus musculus (49)
Arabidopsis thaliana (15)
Escherichia coli (10)
Glycine max (9)
Staphylococcus aureus (4)
Zea mays (3)
Oryza sativa Japonica Group (2)
Mycobacterium tuberculosis H37Rv_2009 (2)
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Klebsiella pneumoniae (2)
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Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344 (1)
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Caenorhabditis elegans (1)
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Chlorocebus sabaeus (1)
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Homo (1)

Organisms

Homo sapiens (1)

Repository

biostudies-arrayexpress (109)
PeptideAtlas (95)
pride (90)
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Tissue

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Disease

Melanoma (7)
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Retinopathy of prematurity (2)
Acute leukemia (1)
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Burkitt lymphoma (1)
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Congenital contractural arachnodactyly (1)
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Marfan syndrome (1)
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Periodontitis (1)
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Prostate cancer (1)
Relapsing-remitting multiple sclerosis (1)
Scabies (1)
Type 1 diabetes mellitus (1)

Technology Type

Mass Spectrometry (90)
Shotgun proteomics (37)
Mass spectrometry (27)
Bottom-up proteomics (20)
Data-dependent acquisition (11)
Affinity purification coupled with mass spectrometry proteomics (10)
Mass spectrometry assay (8)
Top-down proteomics (7)
Gel-based experiment (6)
Data-independent acquisition (5)
SWATH MS (5)
Proteogenomics (3)
NMR spectroscopy (2)
Illumina HiSeq 2000 (1)
Illumina HiSeq 2000, Affymetrix SNP 6.0 (1)
Illumina OncoArray (1)
Glycoproteomics (1)
Immunopeptidomics (1)
Mass spectrometry imaging (1)
SRM/MRM (1)

Instrument Platform

LTQ Orbitrap Velos (106)
Illumina HiSeq 4000 (8)
Liquid Chromatography MS - positive - reverse phase (8)
Q Exactive Plus (5)
Q Exactive (5)
Liquid Chromatography MS - positive - reverse-phase (5)
Liquid Chromatography MS - negative - reverse phase (4)
Liquid Chromatography MS - negative - reverse-phase (4)
NextSeq 2000 (3)
Orbitrap Exploris 480 (3)
Illumina MiSeq (2)
Illumina HiSeq 2500 (2)
Q Exactive HF-X (2)
6540 Q-TOF LC/MS (Agilent) (2)
Exactive (Thermo Scientific) (2)
Gas Chromatography MS - positive (2)
Liquid Chromatography MS - Positive (LC-MS (Positive)) (2)
Liquid Chromatography MS - negative - hilic (2)
Liquid Chromatography MS - positive - hilic (2)
Nuclear Magnetic Resonance (NMR) - (2)
Illumina NovaSeq 6000 (1)
Illumina HiSeq 2000 (1)
Illumina HiSeq 3000 (1)
LTQ (1)
LTQ Orbitrap (1)
Orbitrap Fusion Lumos (1)
Q-Exactive (1)
TSQ Quantiva (1)
TimsTOF Pro (1)
Agilent 7890 (1)

Publication Date

2014 (120)
2021 (27)
2023 (25)
2019 (24)
2022 (21)
2025 (20)
2026 (19)
2024 (15)
2013 (14)
2012 (12)
2015 (11)
2011 (11)
2010 (10)
2016 (8)
2020 (7)
2018 (6)
2008 (5)
2009 (4)
2007 (3)
2017 (3)
2006 (2)
2027 (1)

UNIPROT ID/AC

1FEH1_WHEAT (1)
4565.EPlTAEP00000010002 (1)
4565.EPlTAEP00000010027 (1)
4565.EPlTAEP00000010105 (1)
4565.EPlTAEP00000010109 (1)
4565.EPlTAEP00000010115 (1)
4565.Traes_1AL_00485097A.2 (1)
4565.Traes_1AL_00744EBC6.2 (1)
4565.Traes_1AL_0121566F8.1 (1)
4565.Traes_1AL_013C8AF6B1.1 (1)
4565.Traes_1AL_014F29DA6.1 (1)
4565.Traes_1AL_015BAE72C.1 (1)
4565.Traes_1AL_01806281A.1 (1)
4565.Traes_1AL_0226AAD07.1 (1)
4565.Traes_1AL_034B63223.1 (1)
4565.Traes_1AL_036E330F0.1 (1)
4565.Traes_1AL_03D275069.1 (1)
4565.Traes_1AL_0458C8353.1 (1)
4565.Traes_1AL_04A4521BB.2 (1)
4565.Traes_1AL_04EA15F57.1 (1)
4565.Traes_1AL_051FE2815.1 (1)
4565.Traes_1AL_087978D78.1 (1)
4565.Traes_1AL_08A2F5FA4.1 (1)
4565.Traes_1AL_08A7811E1.3 (1)
4565.Traes_1AL_0912DED70.1 (1)
4565.Traes_1AL_093513BF1.1 (1)
4565.Traes_1AL_09486AD47.1 (1)
4565.Traes_1AL_0A1043127.1 (1)
4565.Traes_1AL_0A5A0E0D3.1 (1)
4565.Traes_1AL_0A7711D82.1 (1)

ENSEMBL ID

ENSG00000170477 (95)
ENSG00000229353 (47)
ENSG00000147251 (18)
ENSG00000176092 (2)
ENSG00000247315 (1)

CHEBI ID

CHEBI:17596 (15)
CHEBI:16704 (14)
CHEBI:15428 (11)
CHEBI:16335 (11)
CHEBI:17562 (11)
CHEBI:17154 (10)
CHEBI:17368 (10)
CHEBI:17568 (10)
CHEBI:16040 (9)
CHEBI:16449 (9)
CHEBI:16750 (9)
CHEBI:16919 (9)
CHEBI:17750 (9)
CHEBI:27897 (9)
CHEBI:28044 (9)
CHEBI:28842 (9)
CHEBI:30769 (9)
CHEBI:15741 (8)
CHEBI:15940 (8)
CHEBI:16235 (8)
CHEBI:16708 (8)
CHEBI:17268 (8)
CHEBI:17306 (8)
CHEBI:17821 (8)
CHEBI:17822 (8)
CHEBI:25017 (8)
CHEBI:26271 (8)
CHEBI:15756 (7)
CHEBI:15891 (7)
CHEBI:16196 (7)

Metabolite Name

Inosine (11)
Uridine (11)
Cytidine (9)
Adenosine (8)
Betaine (8)
Adenine (7)
Creatine (7)
Guanosine (7)
Cytosine (6)
Glycine (6)
Hypoxanthine (6)
L-Glutamine (6)
Riboflavin (6)
Alanine (5)
Betaine aldehyde (5)
CMP (5)
Cholic acid (5)
Guanine (5)
Histamine (5)
Indole (5)
L-Methionine (5)
L-Phenylalanine (5)
L-Tyrosine (5)
Maltose (5)
Pseudouridine (5)
Thymine (5)
Trehalose (5)
Tryptophan (5)
Uracil (5)
Xanthine (5)

First Public Date

2025 (1)

Modelling Approach

Ordinary differential equation model (1)

Lab affiliation

Bioplatforms Australia (7)
Boston Children's Hospital (4)
Department of Cancer Biology, Dana-Farber Cancer Institute, Boston, MA 02215, USA., Department of Biological Chemistry and Molecular Pharmacology, Harvard Medical School, Boston, MA 02115, USA (3)
Department of Molecular & Integrative Physiology,University of Michigan Medical School, 5325 Brehm Tower, 1000 Wall St., Ann Arbor, MI, 48105 (3)
Tumor Biology Department Molecular Medicine Program Moffitt Cancer Center Tampa, FL, USA (3)
Center for Functional Protein Assemblies (CPA), Department of Bioscience, TUM School of Natural Sciences, Technical University of Munich (TUM), Ernst-Otto-Fischer-Stra?e 8, 85748 Garching, Germany (2)
Department of Chemistry and Biochemistry University of Colorado, Boulder Boulder, CO 80309 (2)
Michigan State University (2)
1 Department of Computer Science, Hanyang University, Seoul 04763, Republic of Korea 2 Institute for Artificial Intelligence Research, Hanyang University, Seoul 04763, Republic of Korea (1)
Associate Professor, Neurology UCSF Weill Institute for Neurosciences School of Medicine University of California, San Francisco (1)
Biological Sciences Division, Pacific Northwest National Laboratory (1)
Bioplatforms Australia (project manager) (1)
Brigham and Women's Hospital (1)
Brigham and Women's Hospital, Harvard Medical School (1)
Centre for Tumor Biology, Barts Cancer Institute – a CR-UK Centre of Excellence, Queen Mary University of London, John Vane Science Centre, Charterhouse Square, London, EC1M 6BQ, United Kingdom (1)
City University of Hong Kong (1)
Clinical & Health Sciences, University of South Australia, Adelaide, SA 5095, Australia. (1)
College of Animal Science and Technology, China Agricultural University.College of Animal Science and Technology, China Agricultural University. (1)
Department of Biochemistry and Stanford Cancer Institute, Stanford University School of Medicine (1)
Department of Biomedical engineering, Cleveland clinic lerner research institute (1)
Department of Chemical Biology and Therapeutics, St. Jude Children's Research Hospital, Memphis, TN 38105, USA (1)
Department of Chemistry, Michigan State University (1)
Department of Chemistry, Michigan State University, 578 S Shaw Lane, East Lansing, Michigan 48824, United States (1)
Department of Chemistry, Michigan State University, MI 48824, USA (1)
Department of Medicine II Haematology/Oncology Goethe University Theodor-Stern-Kai 7 60590 Frankfurt Germany (1)
Department of Medicine, Columbia University Irving Medical Center (1)
Department of Microbiology-Immunology, University of North Carolina at Chapel Hill, NC, (1)
Department of Nutrition and Integrative Physiology, College of Health, University of Utah, UT 84112, USA Diabetes and Metabolism Research Center, University of Utah, UT 84112, USA (1)
Department of Oncological Sciences, Department of Dermatology, The Tisch Cancer Institute, Icahn School of Medicine at Mount Sinai (1)
Department of Opthalmology, Boston Children's Hospital, Harvard Medical School (1)

IsPrivate

False (1)

Modification

4x(2)H labeled dimethylated residue (1)
Not available (1)

Study type

Transcription profiling by array (49)
RNA-seq of coding RNA (23)
ChIP-seq (10)
RNA-seq of non coding RNA (6)
Other (5)
Unknown experiment type (2)
Transcription profiling by RT-PCR (2)
Hi-C (2)
Methylation profiling by high throughput sequencing (2)
ChIP-chip by tiling array (1)
RNAi profiling by array (1)
4C (1)
Comparative genomic hybridization by array (1)
ATAC-seq (1)
Methylation profiling by array (1)
RNA-seq of coding RNA from single cells (1)

Release Date

2022 (699)
2025 (695)
2021 (639)
2023 (636)
2024 (618)
2020 (484)
2019 (417)
2018 (319)
2017 (299)
2016 (271)
2015 (234)
2014 (175)
2013 (139)
2011 (103)
2012 (97)
2010 (87)
2026 (82)
2009 (58)
2008 (35)
2006 (16)
2007 (14)
2004 (10)
2005 (4)
2003 (3)
2001 (3)
1999 (3)
1998 (2)
2002 (1)
2000 (1)

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Arabidopsis CBP60g Contributes to MAMP-Induced SA Accumulation and Is Involved in Disease Resistance

Salicylic acid (SA)-induced defense responses are important factors during effector triggered immunity and microbe-associated molecular pattern (MAMP)-induced immunity in plants. This article presents evidence that a member of the Arabidopsis CBP60 gene family, CBP60g, contributes to MAMP-triggered ...

ORGANISM(S): Arabidopsis thaliana

2010-05-07 | E-GEOD-14237 | biostudies-arrayexpress

Gated SA effect on transcriptome

We used microarrays to identify genes that respond to salycilic acid (SA) differently during the subjective morning and subjective night. 23-day-old wild type Arabidopsis seedlings. 24 samples total. Three biological replicates were used

ORGANISM(S): Arabidopsis thaliana

2015-06-22 | E-GEOD-61059 | biostudies-arrayexpress

SA, elf18 treatment of WT and tbf1 mutant

Identification of TBF1-dependent and SA, elf18-responsive genes in Arabidopsis 24 samples total, 2 treatments with corresponding mock, wild type samples served as control, 3 biological replicates

ORGANISM(S): Arabidopsis thaliana

2012-01-17 | E-GEOD-34047 | biostudies-arrayexpress

Quantitative analysis of changes in the phosphoproteome of maize induced by the plant hormone salicylic acid

Phytohormone salicylic acid (SA) plays an important role in regulating various physiological and biochemical processes. Our previous study identified several protein kinases responsive to SA, suggesting an important role for phosphorylation events in the plant response to SA.

ORGANISM(S): Zea mays (Maize)

2018-10-24 | PXD002586 | Pride

A genome-wide screen for human salicylic acid (SA)-binding proteins reveals targets through which SA may influence development of various diseases.

Not available

S-EPMC6739329 | biostudies-literature

The Genetic Network Controlling the Arabidopsis Transcriptional Response to Pseudomonas syringae pv. maculicola

Expression profiling of wild-type plants and mutants with defects in key components of the defense signaling network was used to model the Arabidopsis network 24 hours after infection by Pseudomonas syringae pv. maculicola strain Psm ES4326. Results using the Affymetrix ATH1 array revealed that expr...

ORGANISM(S): Arabidopsis thaliana

2008-07-18 | E-GEOD-11009 | biostudies-arrayexpress

The impact of BRCA2A and SSN2 on plant defense genes

BRCA2A: We used microarrays to identify differentially expressed genes. We focused on those genes that were dramatically salicylic acid-induced (>2-fold) and BRCA2A-dependent in npr1 sni1 double mutants. SSN2: We used microarrays to identify differentially expressed genes. We focused on those genes ...

ORGANISM(S): Arabidopsis thaliana

2010-11-21 | E-GEOD-23617 | biostudies-arrayexpress

Identification of salicylic acid (SA)- and pathogen-responsive ubiquitin-binding proteins in Arabidopsis thaliana

The ubiquitin-proteasome system (UPS) is a key regulatory mechanism in plant immunity. Target proteins are labelled with ubiquitin chains that form distinct topological structures to modulate their activity and stability. Here, we identified ubiquitin-binding proteins (UBPs) that specifically intera...

ORGANISM(S): Arabidopsis thaliana (Mouse-ear cress)

2026-02-12 | PXD071198 | Pride

MM/PB(GB)SA benchmarks on soluble proteins and membrane proteins.

Not available

S-EPMC9751045 | biostudies-literature

The SA-WRKY70-PR-Callose Axis Mediates Plant Defense Against Whitefly Eggs.

Not available

S-EPMC11593482 | biostudies-literature

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