Ward R R - OmicsDI

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Unknown (4581)
Transcriptomics (122)
Proteomics (64)
Genomics (37)
Metabolomics (16)
Other (3)
Models (2)
Genomic (2)

Organisms

Homo sapiens (60)
Schizophyllum commune H4-8 (59)
Mus musculus (44)
Rattus norvegicus (10)
synthetic construct (9)
Arabidopsis thaliana (4)
seawater metagenome (3)
Archaea (3)
Bos taurus (2)
Caenorhabditis elegans (2)
Drosophila melanogaster (2)
Alphainfluenzavirus (1)
aquatic metagenome (1)
marine sediment metagenome (1)
Pomacentrus moluccensis (1)
Melopsittacus undulatus (1)
Streptopelia risoria (1)
Caldicellulosiruptor saccharolyticus (1)
Capsicum annuum (1)
Macaca mulatta (1)
Fragilariopsis cylindrus (1)
unidentified (1)
Aedes aegypti (1)
Staphylococcus aureus (1)
Oryctolagus cuniculus (1)
Triticum aestivum (1)
Escherichia coli (1)
Saccharomyces cerevisiae (1)
Sus scrofa (1)
Plasmodium (1)

Organisms

Homo sapiens (2)
Mus musculus (2)

Repository

biostudies-arrayexpress (125)
pride (59)
EGA (20)
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geo (5)
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Tissue

Cell culture (10)
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Disease

Amyotrophic lateral sclerosis (2)
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Technology Type

Mass Spectrometry (59)
Shotgun proteomics (35)
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SRM/MRM (3)
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HDMSE (1)
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Instrument Platform

Liquid Chromatography MS - negative - reverse phase (5)
Liquid Chromatography MS - positive - hilic (5)
Illumina HiSeq 4000 (4)
Illumina NovaSeq 6000 (3)
5975C Series GC/MSD (Agilent) (3)
Nuclear Magnetic Resonance (NMR) - (3)
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Zephyr G3 NGS workstation (1)
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Illumina HiSeq 2000 (1)
NextSeq 500 (1)
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LTQ Orbitrap (1)
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6460 Triple Quadrupole LC/MS (Agilent) (1)
Direct infusion MS - negative (1)
Liquid Chromatography MS - Positive (LC-MS (Positive)) (1)
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Bruker (1)
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Liquid Chromatography MS - negative - reverse-phase (1)

Publication Date

2025 (18)
2010 (17)
2011 (16)
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2014 (15)
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2018 (13)
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2015 (12)
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2013 (11)
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2009 (6)
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2019 (5)
2007 (4)
2023 (4)
2017 (3)
2006 (2)
2005 (2)
2004 (1)
2003 (1)

CHEBI ID

CHEBI:15428 (6)
CHEBI:16449 (5)
CHEBI:28044 (5)
CHEBI:18186 (5)
CHEBI:15366 (4)
CHEBI:7916 (4)
CHEBI:18012 (4)
CHEBI:30769 (4)
CHEBI:16335 (4)
CHEBI:17822 (4)
CHEBI:15741 (4)
CHEBI:22653 (4)
CHEBI:27266 (4)
CHEBI:17368 (4)
CHEBI:26271 (4)
CHEBI:17234 (4)
CHEBI:24898 (4)
CHEBI:25094 (4)
CHEBI:78320 (4)
CHEBI:30776 (3)
CHEBI:17992 (3)
CHEBI:16199 (3)
CHEBI:27823 (3)
CHEBI:14336 (3)
CHEBI:30763 (3)
CHEBI:30746 (3)
CHEBI:33508 (3)
CHEBI:17351 (3)
CHEBI:16414 (3)
CHEBI:422 (3)

Metabolite Name

Proline (4)
Histidine (3)
Pantothenic acid (3)
Lysine (3)
Malic acid (3)
Asparagine (3)
Serine (3)
Alanine (3)
Phenylalanine (3)
Glutamine (3)
Adenosine (3)
Hypoxanthine (3)
Glucose (3)
Glycine (3)
Creatine (3)
Taurine (3)
Xanthine (3)
Sucrose (3)
5-Methyluridine (2)
N-Acetylaspartate (2)
N,N-Dimethylglycine (2)
Creatine phosphate (2)
Acetate (2)
Iminodiacetic acid (2)
Hypotaurine (2)
Lactic acid (2)
Valine (2)
L-Cystine (2)
1-Methylnicotinamide (2)
Trigonelline (2)

IsPrivate

False (2)

First Public Date

2020 (3)
2022 (2)
2026 (1)
2025 (1)
2024 (1)
2023 (1)
2019 (1)
2017 (1)
2015 (1)

Modelling Approach

Ordinary differential equation model (2)

Study type

Transcription profiling by array (88)
RNA-seq of coding RNA (11)
Other (9)
Comparative genomic hybridization by array (4)
ChIP-seq (4)
Animal - High-throughput sequencing (2)
ChIP-chip by tiling array (1)
ChIP-chip by array (1)
Genotyping by array (1)
Methylation profiling by array (1)
RNA-seq of coding RNA from single cells (1)
Methylation profiling by high throughput sequencing (1)
RNA-seq of non coding RNA (1)

Release Date

2022 (576)
2025 (574)
2021 (515)
2023 (493)
2024 (446)
2020 (351)
2019 (273)
2018 (246)
2017 (190)
2016 (174)
2015 (172)
2014 (154)
2012 (95)
2013 (90)
2026 (79)
2011 (74)
2010 (64)
2009 (39)
2008 (33)
2007 (16)
2006 (11)
2005 (9)
2004 (8)
2003 (8)
2000 (6)
2001 (5)
2002 (4)
1997 (1)

Lab affiliation

Florida State University (4)
Lab Head, Medical Mycology, Maynooth Univeristy (2)
Sunitha Nagrath Lab, 2800 Plymouth Rd, NCRC Building 10, Ann Arbor, MI- 48109 (1)
Newcastle University Biosciences Institute, Newcastle University, Newcastle upon Tyne, UK (1)
Department of Biochemistry, The University of Western Ontario, London, Ontario, Canada. Department of Chemistry, The University of Western Ontario, London, Ontario, Canada. (1)
Dr. Andreas Otto Institute for Microbiology Department of Microbial Proteomics Ernst-Moritz-Arndt-University Greifswald F.-L.-Jahn-Str. 15 17489 Greifswald phone: +49 3834 4205920 fax: +49 3834 4205902 (1)
Chief Scientific Officer, Pelago Bioscience AB (1)
Drug Delivery, Disposition and Dynamics, Monash Institute of Pharmaceutical Sciences, Monash University, Parkville, Australia (1)
Kings College University London (1)
1Integrated and Urban Plant Pathology Laboratory, University of Liège, Gembloux Agro-Bio Tech, 2 Passage des Déportés 5030 Gembloux, Belgium (1)
Department of Biochemistry, The University of Western Ontario, London, Ontario, Canada (1)
Lab Head, Medical Mycology Lab (1)
Centre for Medicines Discovery & Target Discovery Institute, Nuffield Department of Medicine, University of Oxford, Oxford, UK (1)
Proteome Sciences Plc., London (1)
Department of Molecular Genetics and Cell Biology, The University of Chicago, Chicago IL, USA (1)
Université de Nantes, INSERM, CNRS, CRCI2NA, F-44000 Nantes, France (1)
Assistant Professor of Neurosurgery Department of Neurosurgery Houston Methodist Research Institute Weill Cornell Medical College (1)
Centre for Proteomic Research, Biological Sciences, University of Southampton (1)
Florida State University Department of Biological Science, Tallahassee, FL, USA. (1)
Department of Integrative Structural and Computational Biology, The Scripps Research Institute, La Jolla, CA 92037, United States (1)
Division of Pathology Laboratories, Institute of Genetics and Molecular Medicine, University of Edinburgh (1)
Principle Investigator Proteomics (1)
Mass Spectrometry Facility Barts Cancer Institute Queen Mary, University of London John Vane Science Centre, Charterhouse Square, London EC1M 6BQ (1)
Amgen Inc. (1)
Department of Molecular Biology, Princeton University, US (1)
Mayo Proteomics Core (1)
Centre for Genomic Regulation (CRG), the Barcelona Institute of Science and Technology, Carrer Dr. Aiguader 88, Barcelona 08003, Spain. (1)
Department of Orthopaedic Surgery School of Medicine University of California San Diego 9500 Gilman Drive MC0863 La Jolla, CA, USA (1)
WWU Muenster, Institute of Plant Biology and Biotechnology (1)
Center for Alzheimer’s Disease and Related Dementias (CARD) National Institute on Aging (NIA) National Institutes of Health (NIH) (1)

Tags

xref:PubMed:26121046 (1)
xref:PubMed:31726115 (1)
xref:PubMed:32057994 (1)
xref:PubMed:41011433 (1)

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Altered interactions between the gut microbiome and colonic mucosa precede polyposis in APCMin/+ mice

Mutation of the adenomatous polyposis coli (APC gene), an early event in the adenoma-carcinoma sequence, is present in 70-80% of sporadic human colorectal adenomas and carcinomas. To test the hypothesis that mutation of the APC gene alters microbial interactions with host intestinal mucosa prior to...

ORGANISM(S): Mus musculus

2015-08-24 | E-GEOD-67634 | biostudies-arrayexpress

Norovirus VPg Binds RNA through a Conserved N-Terminal K/R Basic Patch.

Not available

S-EPMC8310136 | biostudies-literature

"There Is a Cat on Our Ward": Inpatient and Staff Member Attitudes toward and Experiences with Cats in a Psychiatric Ward.

Not available

S-EPMC6747524 | biostudies-literature

Regulation of nitrous oxide production in low oxygen waters off the coast of Peru

This SuperSeries is composed of the SubSeries listed below. [SUBMITTER_CITATION]: Frey, C., Bange, H. W., Achterberg, E. P., Jayakumar, A., Löscher, C. R., Arévalo-Martínez, D. L., León-Palmero, E., Sun, M., Sun, X., Xie, R. C., Oleynik, S., and Ward, B. B.: Regulation of nitrous oxide production in...

ORGANISM(S): seawater metagenome Archaea synthetic construct

2020-01-07 | GSE142806 | GEO

The substrate specificity, enantioselectivity and structure of the (R)-selective amine : pyruvate transaminase from Nectria haematococca.

Not available

S-EPMC4255305 | biostudies-literature

The MC1R r allele does not increase melanoma risk in MITF E318K carriers.

Not available

S-EPMC10230961 | biostudies-literature

Cub Ward: The Real Not Real Ward - a student nurse led simulation ward.

Not available

S-EPMC9884185 | biostudies-literature

Drug resistant MTB strains from Moldova