Watanabe S S - OmicsDI

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Unknown (6231)
Transcriptomics (143)
Proteomics (69)
Genomics (24)
Metabolomics (14)
Genomic (2)
Other (2)
Models (1)

Organisms

Homo sapiens (104)
Mus musculus (48)
Acidithiobacillus ferrooxidans ATCC 53993 (24)
Aerococcus urinae NBRC 15544 = CCUG 36881 (24)
Saccharomyces cerevisiae (8)
Rattus norvegicus (5)
Arabidopsis thaliana (4)
Chlamydomonas reinhardtii (3)
Xenopus laevis (3)
Oryza sativa (3)
cellular organisms (3)
Streptococcus dysgalactiae subsp. equisimilis (2)
Paraprevotella clara (2)
Rattus (1)
Hymenochirus boettgeri (1)
Saccharomyces cerevisiae W303 (1)
Cryptomeria japonica (1)
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Solanum lycopersicum (1)
Glycine max (1)
Oryza sativa Japonica Group (1)
Canis lupus familiaris (1)
Gallus gallus (1)
Drosophila melanogaster (1)

Organisms

Saccharomyces cerevisiae (2)

Repository

biostudies-arrayexpress (153)
pride (24)
jPOST (21)
PeptideAtlas (15)
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EGA (11)
MassIVE (7)
dbGaP (2)
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geo (1)

Tissue

Others (8)
Large Intestine (6)
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T-helper 2 cell (1)

Disease

Colorectal Carcinoma (5)
Normal (2)
Not Available (2)
Schizophrenia (1)
Amyotrophic lateral sclerosis (1)
COVID-19 (1)
Disease free (1)
Fungal infectious disease (1)
Liver cirrhosis (1)
Lymphoma (1)

Technology Type

Mass Spectrometry (24)
Mass spectrometry (10)
Shotgun proteomics (10)
Bottom-up proteomics (7)
NMR spectroscopy (5)
Data-dependent acquisition (4)
Affinity purification coupled with mass spectrometry proteomics (2)
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Gel-based experiment (2)
HDMSE (2)
Immunopeptidomics (1)
Top-down proteomics (1)

Instrument Platform

LTQ Orbitrap Velos (16)
Capillary electrophoresis MS - negative (3)
Capillary electrophoresis MS - positive (3)
Nuclear Magnetic Resonance (NMR) - (3)
Instrument (2)
LTQ Orbitrap Elite (2)
Gas Chromatography MS - positive (2)
Liquid Chromatography MS - positive - reverse phase (2)
CytAssist (1)
G2505A DNA microarray scanner [Agilent] (1)
Illumina NovaSeq X (1)
Illumina MiSeq (1)
Illumina HiSeq 2000 (1)
LTQ (1)
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Q Exactive HF (1)
TripleTOF 6600 (1)
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MaXis (Bruker) (1)
Gas Chromatography MS - (1)
Nuclear Magnetic Resonance (NMR) (1)
Bruker (1)
Liquid Chromatography MS - alternating - reverse phase (1)
Liquid Chromatography MS - negative - hilic (1)
Liquid Chromatography MS - positive - hilic (1)
Liquid Chromatography MS - negative - reverse phase (1)
AXIMA CFR (1)
Esquire 3000+ (1)

Publication Date

2013 (48)
2014 (25)
2010 (25)
2016 (21)
2015 (17)
2025 (14)
2011 (11)
2012 (8)
2024 (8)
2023 (7)
2005 (6)
2019 (6)
2008 (6)
2022 (6)
2009 (5)
2007 (5)
2021 (5)
2020 (5)
2018 (4)
2026 (4)
2006 (1)
2004 (1)

UNIPROT ID/AC

A0A024RAN2 (15)
A0A024RC46 (15)
A0A0A0MSA7 (15)
A0A0C4DG89 (15)
A0FGR8 (15)
A0FGR8-2 (15)
A0FGR8-6 (15)
A0MZ66 (15)
A5A3E0 (15)
A6NHR9 (15)
A9IYQ1 (15)
B1AK88 (15)
B1AKZ5 (15)
B3KML9 (15)
B3KT93 (15)
B4DPR2 (15)
B4DRV9 (15)
B4DY08 (15)
B4E1R7 (15)
B4E3A4 (15)
B5MBZ0 (15)
B7Z556 (15)
B7ZME8 (15)
B8ZZQ6 (15)
C9JM50 (15)
C9JZR2 (15)
D3DTX6 (15)
E5RJU9 (15)
E7EVA0 (15)
E7EX29 (15)

ENSEMBL ID

ENSG00000170477 (12)
ENSG00000247315 (10)
ENSG00000147251 (9)
ENSG00000229353 (5)

CHEBI ID

CHEBI:25017 (11)
CHEBI:27266 (11)
CHEBI:26271 (10)
CHEBI:28300 (10)
CHEBI:16449 (10)
CHEBI:22653 (9)
CHEBI:26986 (9)
CHEBI:16811 (9)
CHEBI:15428 (9)
CHEBI:15741 (9)
CHEBI:6650 (9)
CHEBI:28044 (9)
CHEBI:33508 (8)
CHEBI:25094 (8)
CHEBI:18237 (8)
CHEBI:27570 (8)
CHEBI:18257 (8)
CHEBI:24898 (8)
CHEBI:17148 (8)
CHEBI:15940 (8)
CHEBI:29016 (8)
CHEBI:18012 (8)
CHEBI:78320 (8)
CHEBI:30915 (8)
CHEBI:27897 (8)
CHEBI:30769 (8)
CHEBI:16765 (7)
CHEBI:15901 (7)
CHEBI:26984 (7)
CHEBI:17822 (7)

Metabolite Name

Succinate (5)
3-Hydroxybutyrate (4)
Malate (4)
Glutamate (4)
Leucine (4)
Aspartate (4)
Valine (4)
Nicotinate (4)
Lactate (4)
Proline (4)
Isoleucine (4)
Glucose (4)
Pyruvate (4)
Uridine (4)
2-Hydroxybutyrate (3)
Butyrate (3)
Propionate (3)
Trehalose 6-phosphate (3)
GTP (3)
Glycerate (3)
Citramalate (3)
Gluconate (3)
6-Phosphogluconate (3)
UDP-glucuronate (3)
UDP-glucose (3)
Histidine (3)
Glycine (3)
UTP (3)
UDP (3)
CTP (3)

First Public Date

2023 (1)
2014 (1)

Modelling Approach

Ordinary differential equation model (1)

Lab affiliation

Department of Plant Physiology, University of Rostock, Germany (2)
Proteome Research Center (2)
1. Walter and Eliza Hall Institute of Medical Research, 1G Royal Parade, Parkville, 3052, Victoria, Australia and Department of Medical Biology, The University of Melbourne, Royal Parade, Parkville, 3052, Victoria, Australia (1)
5Department of Biotechnology, Graduate School of Engineering, Osaka University (1)
Angiogenesis & Metabolism Laboratory, Max Planck Institut for Heart and Lung Research, 61231 Bad Nauheim, Germany (1)
Cambridge Institute for Medical Research, Hills Road, Cambridge, CB2 0XY (1)
Department of Biology, University of Fribourg Chemin du Musée 10, 1700 Fribourg, Switzerland T +41 26 300 8631 (1)
Department of Environmental Medicine and Molecular Toxicology, Tohoku University Graduate School of Medicine, Sendai 980-8575, Japan. (1)
Department of Pathology, University of California, San Francisco. San Francisco, CA, USA. Institute for Neurodegenerative Diseases, Weill Institute for Neurosciences, University of California, San Francisco, San Francisco, CA, USA. (1)
Department of Redox Molecular Medicine, Tohoku University Graduate School of Medicine (1)
Division of Gastroenterology and Hepatology, Graduate School of Medical and Dental Sciences, Niigata University (1)
Institute for Fundamental Biomedical Research, Biomedical Sciences Research Center Alexander Fleming, Athens/Greece (1)
Institute for Fundamental Biomedical Research, Biomedical Sciences Research Center AlexanderFleming, Athens/Greece. (1)
Institute for Neurodegenerative Diseases, Weill Institute for Neurosciences, University of California, San Francisco, San Francisco, CA, USA. Department of Pathology, University of California, San Francisco, San Francisco, CA, USA. (1)
Institute of Biochemistry and Biology, Department of Molecular Enzymology, University of Potsdam, Potsdam, Germany (1)
Laboratory of Proteome Research, National Institute of Biomedical Innovation (1)
National Institute of Biomedical Innovation, JAPAN (1)
Nuffield Department of Medicine, University of Oxford, Oxford, UK (1)
Professor, Niigata U. Faculty of Agriculture, Lab. of Plant Breeding 2-8050 Ikarashi, Nishi-ku, Niigata 950-2181, Japan Tel +81-25-262-6615 Fax +81-25-262-6854 E-mail :okazaki@agr.niigata-u.ac.jp　 (1)
RIKEN RCAI (1)
Tufts University School of Medicine 136 Harrison Avenue, St 328A, Boston, MA 02111 Phone 617 636 4050 Fax 617 636 2413 (1)
University of Basel, Biozentrum, Switzerland (1)

IsPrivate

False (1)

Modification

4x(15)N labeled L-arginine (1)
Not available (1)

Study type

Transcription profiling by array (107)
RNA-seq of coding RNA (19)
ChIP-seq (11)
RNA-seq of non coding RNA (3)
Unknown experiment type (2)
ChIP-chip by tiling array (2)
Genotyping by array (2)
Comparative genomic hybridization by array (2)
Methylation profiling by array (2)
Cell line - High-throughput sequencing (1)
Spatial transcriptomics by high-throughput sequencing (1)
Other (1)

Release Date

2025 (694)
2021 (672)
2022 (670)
2023 (653)
2024 (567)
2020 (494)
2019 (370)
2018 (367)
2017 (298)
2016 (275)
2014 (228)
2015 (194)
2013 (165)
2012 (117)
2026 (112)
2010 (106)
2011 (95)
2009 (68)
2008 (50)
2007 (35)
2006 (30)
2005 (27)
2003 (24)
2000 (17)
2001 (13)
2004 (12)
2002 (11)
1999 (11)
1998 (7)
1997 (1)

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Mre11 suppresses replication stress and gene amplification proficiency

Gene amplification, copy-number increases of particular genes and surrounding genomic segments, promotes cancer progression and acquired therapy resistance. Thus, understanding genetic traits that confer gene amplification proficiency is important. The primary step for gene amplification is sponta...

ORGANISM(S): Cricetulus griseus

2015-03-05 | E-GEOD-59487 | biostudies-arrayexpress

Angiotensin II Destabilizes Coronary Plaques in Watanabe Heritable Hyperlipidemic Rabbits.

Not available

S-EPMC4850116 | biostudies-literature

In-depth membrane proteomic study of breast cancer tissues

Proteomics on Human breast cancer tissue samples. 9 patients with high risk or 9 patiens low risk MammaPrint breast cancer. Membran fraction. Proteins were reduced, alkylated, digested with Lys-C and Trypsin, and labelled with iTRAQ4plex: 114; high risk; 115; low risk.

ORGANISM(S): Homo sapiens (Human)

2013-01-08 | PXD000066 | Pride

A Pacific Oyster-Derived Antioxidant, DHMBA, Protects Renal Tubular HK-2 Cells against Oxidative Stress via Reduction of Mitochondrial ROS Production and Fragmentation.

Not available

S-EPMC10298743 | biostudies-literature

Complete genome sequencing of three human clinical isolates of Staphylococcus caprae reveals virulence factors similar to those of S. epidermidis and S. capitis.

Not available

S-EPMC6225691 | biostudies-literature

Immunogenicity and protective efficacy of SARS-CoV-2 recombinant S-protein vaccine S-268019-b in cynomolgus monkeys.

Not available

S-EPMC9167832 | biostudies-literature

Protein S-glutathionylation stimulate adipogenesis by stabilizing C/EBPβ in 3T3L1 cells.

Not available

S-EPMC8491561 | biostudies-literature

Transcription profiling of S. cerevisiae stress response to exposure of the natural product pyocyanin.

Pyocyanin has been shown to engage in redox transfer of electrons from NADPH to oxygen to generate superoxide radicals. Transcriptional response to oxygen stress has been characterized in yeast and should be observable upon exposure to pyocyanin if this is the true mode of action. We used microarra...

ORGANISM(S): Saccharomyces cerevisiae

2008-06-14 | E-GEOD-6185 | biostudies-arrayexpress

Vasospasm of atherosclerotic coronary arteries precipitates acute ischemic myocardial damage in myocardial infarction-prone strain of the Watanabe heritable hyperlipidemic rabbits.

Not available

S-EPMC4349325 | biostudies-literature

Transition-metal-free controlled polymerization for poly(p-aryleneethynylene)s.

Not available

S-EPMC5592747 | biostudies-literature

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6486 Results

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