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Genomics[E-TABM-722] Transcription factor binding evolution in five vertebrates
Five-vertebrate ChIP-seq reveals the evolutionary dynamics of trancription factor binding. The SRF files for this experiment can be found in the European Read Archive with study accession number ERP000054. ArrayExpress Submission Date: Apr 07 2010 ArrayExpress Release Date: Apr 08 2010 Publication A...
ORGANISM(S): Gallus gallus Homo sapiens Mus musculus Canis lupus familiaris Monodelphis domestica 
2010-06-02 | GSE22078 | GEO
Genomics[E-TABM-722] Transcription factor binding evolution in five vertebrates
[E-TABM-722] Transcription factor binding evolution in five vertebrates
PRJNA128961 | ENA
GenomicsCombinatorial transcription factor binding evolution in five placental mammals
Zoo-ChIP: Functional analysis of experimentally determined combinatorial transcription factor binding in multiple mammalian species
ORGANISM(S): Rattus norvegicus 
2014-09-27 | E-MTAB-1509 | biostudies-arrayexpress
TranscriptomicsThe anti-inflammatory nature of HDL in macrophages is mediated by ATF3
Elevated plasma levels of High Density Lipoprotein (HDL) are associated with decreased risk of cardiovascular disease (CVD). The protective role of HDL in atherosclerosis has been attributed primarily to its ability to remove excess cholesterol from lipid-laden macrophages (foam cells) within the ar...
ORGANISM(S): Mus musculus 
2013-12-08 | E-GEOD-44034 | biostudies-arrayexpress
GenomicsMapping of cohesin, CTCF and a collection of tissue-specific and ubiquitous transcriptional regulators using ChIP-seq in primary wild type and Rad21-cohesin haploinsufficient mouse liver
Mapping of cohesin, CTCF and a collection of tissue-specific and ubiquitous transcriptional regulators using ChIP-seq in primary mouse liver. The following antibodies were used: CTCF (upstate, 07729), STAG1 (abcam, ab4457), STAG2 (abcam, 4464), RAD21 (abcam, ab992), CEBPA (santa cruz, sc9314), HNF4A...
ORGANISM(S): Mus musculus 
2012-06-22 | E-MTAB-941 | biostudies-arrayexpress
GenomicsChIP-seq of Canis familiaris, Gallus gallus, Mus musculus, Homo sapiens, Monodelphis domestica to investigate CEBPA and HNF4a binding in five vertebrates
Five-vertebrate ChIP-seq reveals the evolutionary dynamics of trancription factor binding. The SRF files for this experiment can be found in the European Read Archive with study accession number ERP000054. The fastq files can be found in the raw archives and for some assays links to the ENA runs and...
ORGANISM(S): Canis familiaris 
2010-04-08 | E-TABM-722 | biostudies-arrayexpress
TranscriptomicsTranscription profiling of mouse liver with CEBPa wild type and knockout animals.
Expression analysis of CEBPa knockout effects on gene expression in adult mouse liver. We used a conditional knock out strategy to delete CEBPa specifically in adult mouse hepatocytes and analysed the resulting changes in gene expression by means of microarrays.
ORGANISM(S): Mus musculus 
2010-04-08 | E-MTAB-178 | biostudies-arrayexpress
TranscriptomicsMethylation profiling by array of human and TC1 and TC0 mouse strain livers and testes to study human repetitive elements on human chromosome 21 in a heterologous mouse environment
The aim of this project is to study human repetitive elements on human chromosome 21 in a heterologous mouse environment (Tc1 mouse). To determine the unbiased regulation of the human genome, suppressed regions of human chromosome 21 were identified in vivo in liver and testes of human and Tc1 mouse...
ORGANISM(S): Mus musculus 
2012-12-13 | E-MTAB-1304 | biostudies-arrayexpress
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