Weber K K - OmicsDI

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Unknown (2957)
Transcriptomics (340)
Genomics (80)
Proteomics (60)
Metabolomics (29)
Other (2)
Methylation profiling (1)

Organisms

Homo sapiens (171)
Mus musculus (123)
Drosophila melanogaster (11)
Rattus norvegicus (6)
Pan troglodytes (4)
Entamoeba histolytica (4)
Mycolicibacterium smegmatis MC2 155 (4)
Escherichia coli K-12 (4)
Escherichia coli str. K-12 substr. MG1655 (4)
Arabidopsis thaliana (4)
Porphyromonas gingivalis (3)
Mucor circinelloides (3)
Caenorhabditis elegans (3)
Escherichia coli (3)
Gallus gallus (3)
Danio rerio (3)
Saccharomyces cerevisiae (3)
Aedes albopictus (2)
Lupinus angustifolius (2)
Daphnia magna (2)
Oryza sativa (2)
Salmo salar (2)
Oncorhynchus mykiss (2)
Hordeum vulgare subsp. vulgare (2)
Mycobacterium tuberculosis H37Rv (2)
Triticum aestivum (2)
Candida albicans (2)
Cypripedium henryi (1)
Sminthopsis crassicaudata (1)
Robinia pseudoacacia (1)

Organisms

gut metagenome (1)
Zea mays (1)
Arabidopsis thaliana (1)
Mus musculus (1)

Repository

biostudies-arrayexpress (400)
pride (53)
MetaboLights (29)
EGA (14)
ENA (6)
MassIVE (5)
GPMDB (2)
PanoramaPublic (2)
geo (1)

Tissue

Cell culture (13)
T cell (5)
B cell (4)
Blood (4)
Epithelial cell (4)
Hepatocyte (4)
Liver (4)
Brain (3)
Blood plasma (2)
Cardiac muscle cell (2)
Fibroblast (2)
Lymph node (2)
Permanent cell line cell (2)
Photosynthetic cell (2)
Aorta (1)
Aorta smooth muscle tissue (1)
Breast cancer cell (1)
Breast cancer stem cell (1)
Cholangioma cell (1)
Endometrial microvascular endothelial cells (1)
Glomerular cell (1)
Heart (1)
Keratinocyte (1)
Kidney (1)
Lung (1)
Melanoma cell (1)
Pancreas (1)
Peripheral blood mononuclear cell (1)
Rosette (1)
Seedling (1)

Disease

Not Available (2)
Breast cancer (2)
Cardiovascular system disease (2)
Squamous cell carcinoma (1)
NGT (1)
Wilms tumour (1)
Atherosclerosis (1)
Bacterial sepsis (1)
Cervix carcinoma (1)
Disease free (1)
Familial hypercholesterolemia (1)
Gallbladder carcinoma (1)
Hepatitis C (1)
Influenza (1)
Lymphoma (1)
Melanoma (1)
Multiple myeloma (1)
Neurodevelopmental delay (1)
Pancreatic carcinoma (1)
Recessive dystrophic epidermolysis bullosa (1)
Severe COVID-19 (1)
Severe acute respiratory syndrome (1)
Type 1 diabetes mellitus 2 (1)

Technology Type

Mass Spectrometry (53)
Shotgun proteomics (34)
Mass spectrometry (26)
Bottom-up proteomics (10)
Data-dependent acquisition (5)
Gel-based experiment (4)
SWATH MS (4)
Affinity purification coupled with mass spectrometry proteomics (3)
Data-independent acquisition (3)
SRM/MRM (3)
NMR spectroscopy (2)
Mass spectrometry assay (2)
Illumina HiSeq 2000, Illumina Infinium HumanMethylation450 BeadChip, Affymetrix expression array, ILLUMINA (1)
Affinity proteomics (1)
All-ion fragmentation (1)
DiaPASEF (1)

Instrument Platform

Illumina NovaSeq 6000 (121)
Illumina NovaSeq X (27)
NextSeq 500 (24)
NextSeq 550 (23)
NextSeq 2000 (19)
Illumina HiSeq 2500 (18)
Illumina HiSeq 4000 (12)
Illumina HiSeq 2000 (11)
DNBSEQ-T7 (5)
Illumina MiSeq (5)
None (3)
DNBSEQ-G400 (3)
RNAtag-Seq protocol (Shishkin et al., 2015) (2)
FastPrep‑24 homogenizer (MP Biomedicals) (2)
See manuscript (2)
NucleoSpin RNA/Protein kit lysis buffer (350 µL per tube; Macherey‑Nagel). (2)
Dell PowerEdge R750; CPU: 2 × Intel Xeon Gold 6346 (32 Cores / 64 Threads); RAM: 188 GB (2)
Illumina HiSeq X (2)
Illumina (2)
MinION (2)
BGISEQ-500 (2)
Illumina HiSeq 1500 (2)
Dell PRECISION T7500 (1)
MethylationEPIC BeadChip (Illumina, San Diego, CA, USA) (1)
Maxwell® RSC 48 Instrument (Promega, AS8500) (1)
Transrectal ultrasound-guided systematic sampling of prostate tissue (TRUS biopsy) (1)
TruSeq Stranded Total RNA kit (1)
Norgen Kit (Biotek Corp) (1)
TriReagent (1)
Bench work (1)

Publication Date

2026 (145)
2025 (137)
2010 (24)
2014 (22)
2020 (19)
2023 (16)
2013 (15)
2015 (14)
2011 (14)
2022 (13)
2008 (12)
2012 (11)
2024 (11)
2017 (7)
2016 (7)
2021 (6)
2019 (5)
2018 (4)
2009 (3)
2007 (2)
2006 (1)

CHEBI ID

CHEBI:25017 (10)
CHEBI:16335 (10)
CHEBI:16704 (10)
CHEBI:27897 (10)
CHEBI:17596 (10)
CHEBI:28044 (9)
CHEBI:16811 (9)
CHEBI:6650 (9)
CHEBI:17750 (9)
CHEBI:16027 (9)
CHEBI:16750 (9)
CHEBI:17126 (8)
CHEBI:15354 (8)
CHEBI:22660 (7)
CHEBI:18237 (7)
CHEBI:17148 (7)
CHEBI:24898 (7)
CHEBI:29016 (7)
CHEBI:18257 (7)
CHEBI:15891 (7)
CHEBI:17562 (7)
CHEBI:7916 (7)
CHEBI:17015 (7)
CHEBI:18186 (7)
CHEBI:17172 (7)
CHEBI:30769 (7)
CHEBI:30754 (6)
CHEBI:16610 (6)
CHEBI:30753 (6)
CHEBI:15428 (6)

Metabolite Name

Taurine (5)
Inosine (5)
Leucine (4)
Xanthosine (4)
Cytidine (4)
Methionine (4)
Spermidine (4)
Phenylalanine (4)
Undecylenic acid (3)
Beta-D-Glucose (3)
Alpha-D-Glucose (3)
Cellotriose (3)
D-Gal alpha 1->6D-Gal alpha 1->6D-Glucose (3)
2-hydroxystearate (3)
Threonate (3)
Pyridoxal (3)
Beta-hydroxyisovalerate (3)
UDP-glucose (3)
Uridine (3)
Thymidine (3)
Proline (3)
Lysine (3)
Guanine (3)
Glutamate (3)
Cytosine (3)
Cysteine (3)
Betaine (3)
Arginine (3)
Adenine (3)
Xanthine (3)

First Public Date

2025 (3)
2016 (1)
2014 (1)
2013 (1)

Modification

3x(2)H labeled N6-acetyl-L-lysine (1)
4x(15)N labeled L-arginine (1)

Study type

RNA-seq of coding RNA (137)
Transcription profiling by array (69)
ChIP-seq (36)
RNA-seq of total RNA (29)
RNA-seq of coding RNA from single cells (20)
Methylation profiling by array (19)
DNA-seq (13)
Methylation profiling by high throughput sequencing (11)
Comparative genomic hybridization by array (7)
ATAC-seq (7)
Transcription profiling by RT-PCR (6)
RIP-seq (6)
ChIP-chip by tiling array (4)
CUT&RUN (4)
MicroRNA profiling by high throughput sequencing (3)
Bisulfite-seq (3)
RNA-seq of non coding RNA (3)
Unknown experiment type (2)
CLIP-seq (2)
Spatial transcriptomics by high-throughput sequencing (2)
Hi-C (2)
Ribo-seq (2)
CUT&Tag (1)
CUT&TAG (1)
GRO-seq (1)
MNase-seq (1)
Animal - One-color microarray (1)
One-color microarray (1)
Human - High-throughput sequencing (1)
High-throughput sequencing (1)

Release Date

2025 (442)
2022 (351)
2023 (305)
2021 (299)
2024 (267)
2020 (244)
2019 (197)
2018 (194)
2026 (185)
2015 (135)
2017 (123)
2016 (123)
2014 (97)
2013 (80)
2012 (61)
2011 (61)
2010 (54)
2009 (42)
2008 (38)
2006 (12)
2007 (10)
2005 (10)
2000 (7)
2004 (5)
2003 (5)
1998 (4)
2002 (3)
2001 (3)

Lab affiliation

1. Center for Molecular Medicine Cologne, University of Cologne, Robert-Koch-Str. 21, D- 50931 Cologne, Germany 2. Inst. for Neurophysiology, University of Cologne, Robert-Koch-Str. 39, D-50931 Cologne, Germany 3. CECAD; Cologne Cluster of Excellence in Cellular Stress Responses in Ageing-associated Diseases, University of Cologne, Joseph-Stelzmann-Str. 26, D-50931 Cologne, Germany (1)
1.Semmelweis University, Department of Pharmacology and Pharmacotherapy, Budapest, Hungary. 2.Pharmahungary Group, Szeged, Hungary (1)
95 Institut de Pharmacologie et de Biologie Structurale (IPBS), Université de Toulouse, CNRS, Université Toulouse III - Paul Sabatier (UT3), Toulouse, 31077, France (1)
Baylor College of Medicine (1)
Biozentrum, University of Basel, CH-4056 Basel, Switzerland (1)
Cardiovascular Division, King's College London, London, UK (1)
Center for Cancer Research,Medical University of Vienna,Borschke-Gasse 8a,1090 Vienna (1)
Center for Molecular Signaling (PZMS), Department of Medical Biochemistry and Molecular Biology, Saarland University School of Medicine, Homburg, Germany (1)
Centre for Genomic Regulation (CRG), the Barcelona Institute of Science and Technology, Carrer Dr. Aiguader 88, Barcelona 08003, Spain. (1)
Chair of protomeics and bioanalytics, Technical University of Munich, Freising, Germany (1)
Charité-Universitätsmedizin Berlin, corporate member of Freie Universität Berlin, Humboldt-Universität zu Berlin, and Berlin Institute of Health, Institute of Pharmacology, 10115 Berlin, Germany (1)
Clinical Proteomics Medizinisches Proteom-Center Ruhr-University Bochum and Department of Anesthesiology, Intensive Care Medicine and Pain Therapy University Hospital Knappschaftskrankenhaus Bochum (1)
Dep. of Biology, University of Fribourg, Switzerland (1)
Department Molekulare Systembiologie Helmholtz-Zentrum für Umweltforschung GmbH - UFZ Permoserstraße 15 | 04318 Leipzig (1)
Department of Biology Institute of Molecular Systems Biology ETH Zurich Switzerland (1)
Department of Medicine, University of Chicago (1)
Department of Molecular Systems Biology, Microbiome biology Group, Helmholtz Centre for Environmental Research - UFZ, Leipzig, Germany (1)
Department of Pathology, School of Medicine, Pontificia Universidad Católica de Chile, Santiago, 8330024, Chile (1)
Dept. of Computer Science, University of Tübingen Germany, Center for Bioinformatics, University of Tübingen, Germany, Quantitative Biology Center, University of Tübingen, Germany, Max Planck Institute for Developmental Biology, Germany, (1)
Experimental Systems Immunology Laboratory, Max-Planck Institute of Biochemistry, Martinsried, Germany. (1)
Head / Immunopeptidomics unit Department of Oncology UNIL/CHUV Ludwig Cancer Research Center Biopole III, Chemin des Boversses 155 Epalinges, 1066 Switzerland (1)
Heinrich Heine University - Institute for Plant Biochemistry (1)
Immunopathology of Virus Infections Institute of Virology Technical University of Munich Schneckenburgerstr. 8 D-81675 Munich, Germany tel: +49 (0) 89 4140 9270 (1)
Insitute of molecular systems biology, ETH Zurich, Switzerland (1)
Institut für Medizinische Mikrobiologie und Hygiene Elfriede-Aulhorn-Str. 6 72076 Tübingen Germany (1)
Institut für Physiologische Chemie, Martin-Luther-Universität Halle-Wittenberg, Hollystr. 1, 06114 Halle (Saale); Germany (1)
Institute for Cardiovascular Prevention (IPEK) Klinikum der Universität München, Ludwig-Maximilians-Universität München (LMU Munich) Pettenkoferstr. 9, D-80336 Munich, Germany Telefon: +49 (0)89 4400 - 54672 (1)
Institute for Diabetes and Cancer (IDC), Helmholtz Diabetes Center, Helmholtz Center Munich, Neuherberg, Germany (1)
Institute for Molecular Medicine I, Medical Faculty, Heinrich-Heine-University Duesseldorf, Universitaetsstrasse 1, 40225 Duesseldorf, Germany (1)
Institute for Stroke and Dementia Research (ISD), University Hospital, Ludwig-Maximilian-University (LMU), Munich, Germany (1)

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mRNA-Seq of Daphnia magna exposed to acesulfame K and its photodegradation products against untreated control groups

The experiment investigates how the artificial sweetener acesulfame K and its photodegradation products affect the gene expression in the freshwater invertebrate Daphnia magna. Juvenile D. magna were subjected to an acute immobilization test (OECD Guideline 202) followed by RNA extraction and transc...

ORGANISM(S): Daphnia magna

2026-09-25 | E-MTAB-17689 | biostudies-arrayexpress

mRNA-Seq of Danio rerio exposed to acesulfame K and its photodegradation products against untreated control groups

The experiment investigates how the artificial sweetener acesulfame K and its photodegradation products affect the gene expression in the teleost fish Danio rerio. The main test including transcriptomics, was conducted with 10 µg/L and 100 mg/L as test concentrations. Pooled animals from each exposu...

ORGANISM(S): Danio rerio

2026-09-25 | E-MTAB-17688 | biostudies-arrayexpress

Retinoschisin and Cardiac Glycoside Crosstalk at the Retinal Na/K-ATPase.

Not available

S-EPMC7405613 | biostudies-literature

Retinoschisin is linked to retinal Na/K-ATPase signaling and localization.

Not available

S-EPMC5531734 | biostudies-literature

Cost of vitamin K antagonist anticoagulant treatment in patients with metallic prosthetic valve in mitral position.

Not available

S-EPMC4989584 | biostudies-literature

Leveraging a Sturge-Weber Gene Discovery: An Agenda for Future Research.