Wei Hongyu H - OmicsDI

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Proteomics (3)
Genomics (2)
Transcriptomics (1)
Unknown (1)
Other (1)
Metabolomics (1)

Organisms

Homo sapiens (4)
Saccharomyces cerevisiae (1)
Mus musculus (1)

Repository

biostudies-arrayexpress (2)
iProX (2)
EGA (1)
GPMDB (1)
MetaboLights (1)
pride (1)

Tissue

Cell suspension culture (1)
Fibroblast (1)

Disease

Not Available (1)
Wounds and Injuries (1)

Technology Type

Mass spectrometry (1)
Mass Spectrometry (1)
Shotgun proteomics (1)

Instrument Platform

Instrument (1)
Liquid Chromatography MS - negative - reverse phase (1)
Liquid Chromatography MS - positive - reverse phase (1)

Publication Date

2016 (1)
2010 (1)
2025 (1)
2023 (1)
2024 (1)
2014 (1)

Metabolite Name

((2R,3S,4S,5R,6S)-6-(2-(3-(Benzofuran-5-yl)propanoyl)-3-hydroxy-5-methylphenoxy)-3,4,5-trihydroxytetrahydro-2H-pyran-2-yl)methyl methyl carbonate (1)
(+)-15,16-Dihydroxyoctadecanoic acid (1)
(+)-3,4-Didehydrocoronaridine (1)
(+)-7-epi-Syringaresinol 4'-glucoside (1)
(+)-Abscisic acid (1)
(+)-Bottrospicatol (1)
(+)-cis-3,4-Dihydrophenanthrene-3,4-diol (1)
(-)-Epigallocatechin 3-p-coumaroate (1)
(-)-Fumigaclavine B (1)
(-)-Jasmonic acid (1)
(-)-Menthol (1)
(-)-alpha-5,9-Dimethyl-2-(3-furylmethyl)-2'-hydroxy-6,7-benzomorphane (1)
(-)-jasmonoyl-L-isoleucine (1)
(-)-trans-3,4-Dihydro-4,8-dihydroxy-3-methyl-1H-2-benzopyran-1-one (1)
(10S)-Juvenile hormone III diol (1)
(10Z,14E,16E)-10,14,16-Octadecatrien-12-ynoic acid (1)
(14alpha,17beta,20S,22R)-14,20-Epoxy-17-hydroxy-1-oxowitha-3,5,24-trienolide (1)
(16-Benzyl-5,12-dihydroxy-5,7,14-trimethyl-13-methylidene-6,18-dioxo-17-azatricyclo[9.7.0.01,15]octadeca-3,9-dien-2-yl) acetate (1)
(17E,19E,21E,23E,25E)-4,6,8,10,12,14,16,27-Octahydroxy-3-(1-hydroxyhexyl)-17,28-dimethyl-1-oxacyclooctacosa-17,19,21,23,25-pentaen-2-one (1)
(17R)-17-Ethynyl-11-methoxy-13-methyl-7,8,9,11,12,14,15,16-octahydro-6H-cyclopenta[a]phenanthrene-3,17-diol (1)
(1Ar,3S,4aS,7S,8aS)-3-[(1S,2R,3R)-3-[(2R,5S)-5,6-dimethylheptan-2-yl]-2-(2-hydroxyethyl)-2-methylcyclopentyl]-7-hydroxy-4a-methyl-2,3,5,6,7,8-hexahydro-1aH-naphtho[4,4a-b]oxiren-4-one (1)
(1E)-4-Oxobut-1-ene-1,2,4-tricarboxylate (1)
(1E,4S,5E,7R)-Germacra-1(10),5-dien-11-ol (1)
(1E,4Z,6a,8b,10a)-8-Angeloyloxy-10,15-dihydroxy-3-oxo-1,4,11(13)-germacratrien-12,6-olide (1)
(1R)-5-[2-[(1S,7As)-1-[(1S)-1-(3-hydroxy-3-methylbutoxy)ethyl]-7a-methyl-2,3,3a,5,6,7-hexahydro-1H-inden-4-ylidene]ethylidene]-4-methylidenecyclohexane-1,3-diol (1)
(1R,2R)-2-Amino-1-(4-nitrophenyl)propane-1,3-diol (1)
(1R,2S,3S,4R)-p-Menthane-2,3-diol (1)
(1R,2S,5S,6R,9S,10S)-3,6,17,20-Tetrahydroxy-6-(2-hydroxyacetyl)-1,5-dimethylpentacyclo[11.8.0.02,10.05,9.016,21]henicosa-13,16,18,20-tetraen-15-one (1)
(1R,3R,4R,5S,6S,8x)-1-Acetoxy-8-angeloyloxy-3,4-epoxy-5-hydroxy-7(14),10-bisaboladien-2-one (1)
(1R,6R)-1,4,5,5a,6,9-Hexahydrophenazine-1,6-dicarboxylate (1)

Study type

ChIP-seq (1)
Transcription profiling by array (1)

Release Date

2016 (1)
2010 (1)
2022 (1)

Lab affiliation

State Key Laboratory of Proteomics, Beijing Proteome Research Center, Beijing Institute of Radiation Medicine, Beijing, P. R. China. (1)

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Multiple omics reveal link between the microbiota-gut-brain axis and intracranial aneurysm rupture

Intracranial aneurysms (IAs) are benign cerebrovascular maladies characterized by pathological dilatation in the walls of intracranial arteries. However, spontaneous subarachnoid hemorrhage (SAH) resulting from aneurysm rupture poses a grave threat to the patient's life. Accumulating evidence imp...

2024-12-13 | MTBLS10263 | MetaboLights

Experimental Evidence of Buyang Huanwu Decoction and Related Modern Preparations (Naoxintong Capsule and Yangyin Tongnao Granule) in Treating Cerebral Ischemia: Intestinal Microorganisms and Transcriptomics in Rats.

Not available

S-EPMC9519341 | biostudies-literature

SILAC-based quantitative proteomic analysis of secretome between activated and reverted hepatic stellate cells.

Data from ProteomeXchange, PXD ID: PXD000773. File: zhanghongyu_20110913_13.mzml. Published as part of . From the Abstract: {{i}} Activated hepatic stellate cell (HSC) is the main myofibroblast cell in the liver fibrosis (LF). An important characteristic of the recovery of LF is not only the apopto...

ORGANISM(S): Homo_sapiens_viruses, Human

GPM32310002866 | GPMDB

Resource Reanalysis

SILAC-based Quantitative Proteomic Analysis of Secretome between Activated and Reverted Hepatic Stellate Cells

Activated hepatic stellate cell (HSC) is the main myofibroblast cell in the liver fibrosis(LF). An important characteristic of the recovery of LF is not only the apoptosis of activated HSCs but also reversal of myofibroblast-like phenotype to a quiescent-like phenotype. Understanding the changes of ...

ORGANISM(S): Homo sapiens (Human)

2014-08-11 | PXD000773 | Pride

Lx-2 activation reversion secretome

Expression data from QY and QYRC cell lines

We superinfected a hepatocellular carcinoma (HCC) cell line (QGY-7703,QY) with oncolytic parvovirus H1 (H-1PV) and acquired a group of resistant cells QYRC. Previous studies suggested that cells surviving H-1PV superinfection should behave somewhat similarly to normal cells. When compared with the Q...

ORGANISM(S): Homo sapiens

2016-01-12 | E-GEOD-76754 | biostudies-arrayexpress

Genome-wide Ste12-binding site mapping in MATa segregants of YJM789 x S96 cross

In this study, we mapped for the first time differences in transcription binding among individuals and elucidated the genetic basis of such variation. Whole-genome Ste12 binding profiles were determined using ChIP-Seq in pheromone-treated cells of 43 segregants of a cross between two highly diverge...

ORGANISM(S): Saccharomyces cerevisiae

2010-02-18 | E-GEOD-19635 | biostudies-arrayexpress

National Heart, Lung, and Blood Institute (NHLBI) Bench to Bassinet Program: The Pediatric Cardiac Genetics Consortium (PCGC)

Multi-center, prospective observational cohort study of individuals with congenital heart defects (CHD). Phenotypic data and source DNA of probands, parents, and families of interest are being collected to investigate relationships between genetic factors and phenotypic and clinical outcomes in p...

phs000571.v1.p1 | EGA

Ultradeep N-glycoproteome Atlas of Mouse Reveals Spatiotemporal Signatures of Brain Aging and Neurodegenerative Diseases

The current depth of site-specific N-glycoproteomics is insufficient to fully characterize glycosylation events in biological samples. Herein, we achieved an ultradeep and precision analysis of the N-glycoproteome of mouse tissues by integrating multiple workflows. The largest N-glycoproteomic datas...

ORGANISM(S): Mus Musculus

2025-03-04 | PXD061436 |

Mechanistic Insight into Glioma Through Spatially Multidimensional Proteomics

Characterizing the tumor microenvironment at the molecular level is essential for understanding the mechanisms of tumorigenesis and evolution. However, the specificity of the blood proteome in localized region of the tumor and its linkages with other systems is difficult to investigate. Here, we pro...

ORGANISM(S): Homo Sapiens

2023-07-20 | PXD043970 |

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