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Unknown
(8896)
Proteomics
(69)
Genomics
(30)
Transcriptomics
(19)
Metabolomics
(9)
Genomic
(4)
Models
(1)
Other
(1)
Organisms
Homo sapiens
(45)
Mus musculus
(26)
Saccharomyces cerevisiae
(8)
Salmo salar
(3)
Rattus
(1)
Ciona intestinalis
(1)
Malus domestica
(1)
Schizosaccharomyces pombe
(1)
Arabidopsis thaliana
(1)
Chlorocebus sabaeus
(1)
Cytomegalovirus
(1)
Ixodes scapularis
(1)
Mycobacterium tuberculosis
(1)
Ovis aries
(1)
Rattus norvegicus
(1)
Severe acute respiratory syndrome coronavirus 2
(1)
Organisms
Mus musculus
(11)
Mycobacterium tuberculosis H37Rv
(4)
Homo sapiens
(3)
Mycobacterium tuberculosis
(1)
Repository
pride
(64)
ENA
(25)
biostudies-arrayexpress
(22)
MetaboLights
(7)
MassIVE
(5)
dbGaP
(4)
EGA
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MetabolomicsWorkbench
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BioModels
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GPMDB
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Tissue
Cell culture
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(5)
Epithelial cell
(4)
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(4)
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(4)
Blood plasma
(3)
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(3)
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(3)
Blood serum
(2)
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(2)
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(2)
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(2)
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Blood
(1)
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(1)
Blood-lymph
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Breast
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Cartilage
(1)
Colon
(1)
Conventional dendritic cell
(1)
Endothelial cell of lymphatic vessel
(1)
Ependymal cell
(1)
Flower bud
(1)
Disease
Breast cancer
(4)
Colon cancer
(3)
Disease free
(3)
Prostate adenocarcinoma
(3)
Acute leukemia
(2)
Brain cancer
(2)
Inflammatory bowel disease
(2)
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(2)
Melanoma
(2)
Obesity
(2)
Not Available
(1)
Cancer
(1)
Fatty liver disease
(1)
Alzheimer's disease
(1)
Amyotrophic lateral sclerosis
(1)
COVID-19
(1)
Childhood extraosseous osteosarcoma
(1)
Cholangiocarcinoma
(1)
Chronic bronchitis
(1)
Chronic lymphocytic leukemia
(1)
Disease of metabolism
(1)
Embryonal rhabdomyosarcoma
(1)
Fibrosarcoma
(1)
Head and neck cancer
(1)
Inflammatory bowel disease 1
(1)
Kidney cancer
(1)
Lung carcinoma
(1)
Malignant mesothelioma
(1)
Mucinous pancreas adenocarcinoma
(1)
Neuroblastoma
(1)
Technology Type
Mass Spectrometry
(66)
Shotgun proteomics
(28)
Data-dependent acquisition
(13)
Affinity purification coupled with mass spectrometry proteomics
(11)
Bottom-up proteomics
(10)
Gel-based experiment
(8)
Mass spectrometry
(6)
SWATH MS
(4)
Data-independent acquisition
(3)
Top-down proteomics
(3)
ESI
(2)
Mass spectrometry assay
(1)
All-ion fragmentation
(1)
Instrument Platform
Illumina NovaSeq 6000
(4)
Liquid Chromatography MS - negative - reverse phase
(4)
MA900, Sony
(2)
10x Chromium Controller
(2)
NextSeq 500
(2)
Orbitrap Fusion
(2)
Q Exactive
(2)
LTQ Orbitrap Discovery (Thermo Scientific)
(2)
Illumina MiSeq
(1)
NextSeq 550
(1)
Illumina HiSeq 2000
(1)
Instrument
(1)
LTQ Orbitrap Velos
(1)
Q Exactive HF
(1)
Liquid Chromatography MS - negative - hilic
(1)
Liquid Chromatography MS - positive - hilic
(1)
Liquid Chromatography MS - positive - reverse phase
(1)
Publication Date
2021
(13)
2025
(12)
2024
(11)
2019
(9)
2017
(9)
2026
(9)
2022
(7)
2023
(6)
2015
(5)
2014
(5)
2020
(5)
2013
(4)
2016
(2)
2005
(1)
2018
(1)
CHEBI ID
CHEBI:17596
(5)
CHEBI:16027
(4)
CHEBI:30769
(4)
CHEBI:15428
(3)
CHEBI:15741
(3)
CHEBI:17509
(3)
CHEBI:17752
(3)
CHEBI:17754
(3)
CHEBI:27897
(3)
CHEBI:30915
(3)
CHEBI:37024
(3)
CHEBI:82914
(3)
CHEBI:131434
(2)
CHEBI:132983
(2)
CHEBI:132996
(2)
CHEBI:133028
(2)
CHEBI:133032
(2)
CHEBI:133086
(2)
CHEBI:133148
(2)
CHEBI:133181
(2)
CHEBI:133183
(2)
CHEBI:133185
(2)
CHEBI:133508
(2)
CHEBI:133532
(2)
CHEBI:133542
(2)
CHEBI:133677
(2)
CHEBI:1372
(2)
CHEBI:1427
(2)
CHEBI:14336
(2)
CHEBI:15344
(2)
Metabolite Name
Inosine
(3)
1-methylguanidine
(2)
1-methylhistidine
(2)
1-methylnicotinamide
(2)
1-methylurate
(2)
2-aminoadipate
(2)
2-aminobutyrate
(2)
2-aminoheptanoate
(2)
2-hydroxyglutarate
(2)
2-methylbutyrylcarnitine (C5)
(2)
2-piperidinone
(2)
2-pyrrolidinone
(2)
3-aminoisobutyrate
(2)
3-hydroxybutyrate (BHBA)
(2)
3-hydroxyisobutyrate
(2)
3-methoxytyrosine
(2)
3-methylcytidine
(2)
3-methylglutarylcarnitine (2)
(2)
3-ureidopropionate
(2)
4-acetamidobutanoate
(2)
4-guanidinobutanoate
(2)
4-imidazoleacetate
(2)
5-acetylamino-6-amino-3-methyluracil
(2)
5-acetylamino-6-formylamino-3-methyluracil
(2)
5-hydroxylysine
(2)
5-methylthioadenosine (MTA)
(2)
7-methylguanine
(2)
7-methylxanthine
(2)
Alpha-ketoglutarate
(2)
N-acetyl-1-methylhistidine*
(2)
First Public Date
2024
(6)
2025
(3)
2021
(3)
2014
(3)
2013
(3)
2020
(2)
2026
(1)
2023
(1)
2019
(1)
2016
(1)
2015
(1)
Modelling Approach
Ordinary differential equation model
(1)
Lab affiliation
Department of Biochemistry and Functional Proteomics, Institute of Biology II, Faculty of Biology and BIOSS Centre for Biological Signalling Studies, University of Freiburg, 79104 Freiburg im Breisgau, Germany
(5)
Chemical Biology Program, Memorial Sloan Kettering Cancer Center, New York, New York 10065, USA
(3)
Weill Cornell Medical College
(3)
Weill Cornell Medical College in Qatar
(2)
Weill Cornell Medical College, New York City
(2)
Weill Cornell Medicine - Qatar
(2)
1) Chemical Biology Program, Memorial Sloan Kettering Cancer Center, New York, New York, 10065, USA. 2) Pharmacology Program of the Weill Cornell Graduate School of Medical Sciences, Memorial Sloan Kettering Cancer Center, New York, New York 10065, USA. 3) Tri-Institutional PhD Program in Chemical Biology, Memorial Sloan Kettering Cancer Center, New York, New York 10065, USA.
(1)
Appel Alzheimer's Disease Research Institute & Brain and Mind Research Institute Weill Cornell Medicine New York, NY USA
(1)
Appel Alzheimer's Disease Research Institute Feil Family Brain and Mind Research Institute Weill Cornell Medicine New York, NY 10021
(1)
Assistant Professor of Neurosurgery Department of Neurosurgery Houston Methodist Research Institute Weill Cornell Medical College
(1)
Associate Professor, Neurology UCSF Weill Institute for Neurosciences School of Medicine University of California, San Francisco
(1)
Dana-Farber Cancer Institute
(1)
Department of Chemistry and Chemical Biology, Weill Institute for Cell and Molceular Biology, Cornell University, US
(1)
Department of Computational Biology Weill Institute for Cell and Molecular Biology Center for Innovative Proteomics Cornell University
(1)
Department of Medicine, Weill Cornell Medical College
(1)
Department of Medicine, Weill Cornell Medicine, New York, NY, USA
(1)
Department of Microbiology and Immunology University of Maryland School of Medicine USA
(1)
Department of Molecular Biology and Genetics, Weill Institute for Cell and Molecular Biology, Cornell University, Ithaca, NY 14853
(1)
Department of Neurology and Weill Institute for Neurosciences, University of California, San Francisco
(1)
Department of Pathology and Laboratory Medicine, The Joan and Stanford I. Weill Medical College of Cornell University, New York, NY 10065, USA
(1)
Department of Pathology, University of California, San Francisco. San Francisco, CA, USA. Institute for Neurodegenerative Diseases, Weill Institute for Neurosciences, University of California, San Francisco, San Francisco, CA, USA.
(1)
Department of Pediatrics, Weill Cornell Medicine, New York, NY, USA
(1)
Department of Radiation Oncology, Weill Cornell Medicine, New York, NY, 10065, USA
(1)
Department of Radiation Oncology, Weill Cornell Medicine, New York, NY, USA; Department of Pathology, University of Massachusetts Medical School, Worcester, MA, USA.
(1)
Department of Urology, SUNY Upstate Medical University
(1)
Department of Urology, SUNY Upstate Medical University Syracuse, NY 13210, USA
(1)
Department: Radiation Oncology; Weill Cornell Medicine: Englander Institute of Precision Medicine; USA.
(1)
Departments of Pharmacology and Biochemistry and the Sandra and Edward Meyer Cancer Center at Weill Cornell Medicine
(1)
Division of Pulmonary and Critical Care Medicine Weill Cornell Medicine
(1)
Englander Institute of Precision Medicine Professor Radiation Oncology Professor Physiology and Biophysics Weill Cornell Medicine 1300 York Avenue Room E215 New York, NY 10065
(1)
Tags
pathogen
(5)
pathogen:bacterium
(5)
xref:PubMed:27249779
(4)
xref:PubMed:23340501
(3)
xref:PubMed:17164391
(1)
xref:PubMed:40803325
(1)
xref:PubMed:40463101
(1)
xref:PubMed:32732875
(1)
xref:EuropePMC:PMC7689832
(1)
xref:PubMed:25658098
(1)
xref:PubMed:31916656
(1)
xref:EuropePMC:PMC12352093
(1)
xref:PubMed:24145454
(1)
xref:EuropePMC:PMC11324406
(1)
IsPrivate
False
(1)
Classification
bacteria
(5)
Modification
Not available
(2)
Study type
RNA-seq of coding RNA
(7)
Transcription profiling by array
(6)
RNA-seq of coding RNA from single cells
(4)
ChIP-seq
(2)
Human - High-throughput sequencing
(1)
ATAC-seq
(1)
Methylation profiling by high throughput sequencing
(1)
Release Date
2022
(1025)
2021
(979)
2023
(939)
2024
(895)
2025
(871)
2020
(776)
2019
(557)
2018
(504)
2017
(438)
2016
(412)
2015
(325)
2014
(298)
2013
(165)
2012
(140)
2026
(128)
2011
(121)
2010
(96)
2009
(82)
2008
(36)
2007
(33)
2006
(24)
2005
(23)
2004
(19)
2002
(10)
2003
(9)
2001
(6)
1999
(4)
2000
(2)
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Plasma Metabolomics Profiling of 580 Patients from the Weill Cornell Medicine Early Detection Research Network Prostate Cancer Cohort
Not available
ORGANISM(S):
Homo sapiens
ST002498
|
MetabolomicsWorkbench
Cite
M/D-tumors vs non´-tumor mammary gland tissues
M/D-tumors vs non´-tumor mammary gland tissues
PRJNA635111
|
ENA
Cite
Himar1 TnSeq profiling of M. tuberculosis H37Rv grown at pH5.5
PRJNA935700
|
ENA
Cite
Comparative analysis of IncHI2 plasmids carrying blaCTX-M-2 or blaCTX-M-9 from Escherichia coli and Salmonella enterica strains isolated from poultry and humans.
Not available
S-EPMC2151457
|
biostudies-literature
Cite
5' UTR m(6)A Promotes Cap-Independent Translation.
Not available
S-EPMC4695625
|
biostudies-literature
Cite
Comparison of gene expression in M. tuberculosis TrxB2 mutants
Comparison of gene expression in M. tuberculosis TrxB2 mutants
PRJNA293751
|
ENA
Cite
Salmonella enterica serotype Gambia with CTX-M-3 and armA resistance markers: nosocomial infections with a fatal outcome.
Not available
S-EPMC3122823
|
biostudies-literature
Cite
Dynamic m(6)A mRNA methylation directs translational control of heat shock response.
Not available
S-EPMC4851248
|
biostudies-literature
Cite
Nosocomial outbreak caused by Salmonella enterica serotype Livingstone producing CTX-M-27 extended-spectrum beta-lactamase in a neonatal unit in Sousse, Tunisia.
Not available
S-EPMC1081247
|
biostudies-literature
Cite
Predictors of blaCTX-M-15 in varieties of Escherichia coli genotypes from humans in community settings in Mwanza, Tanzania.
Not available
S-EPMC4850702
|
biostudies-literature
Cite
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