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ModelsConradie2010_RPControl_CellCycle
This model is from the article: Restriction point control of the mammalian cell cycle via the cyclin E/Cdk2:p27 complex. Conradie R, Bruggeman FJ, Ciliberto A, Csikász-Nagy A, Novák B, Westerhoff HV, Snoep JL FEBS J.2010 Jan; 277(2): 357-67 20015233, ...
2024-09-02 | BIOMD0000000265 | BioModels
ModelsMaeda2019_AmmoniumTransportAssimilation
The E. coli ammonium transport and assimilation network. This SBML model simulates Kim's experiment with glucose as a carbon source and external NH4+ = 4 microM for wild type (the refined active transporter model). SBML does not support some of the functions required for the complete simulations sho...
2019-04-15 | MODEL1901090001 | BioModels
MetabolomicsMulti-omic profiles of human nonalcoholic fatty liver disease tissue highlight heterogenic phenotypes
Non-alcoholic fatty liver disease (NAFLD) is a consequence of sedentary life style and high fat diets with an estimated prevalence of about 30% in western countries. It is associated with insulin resistance, obesity, glucose intolerance and drug toxicity. Additionally, polymorphisms in, e.g. APOC3, ...
2015-12-07 | MTBLS174 | MetaboLights
ModelsBier2000_GlycolyticOscillation
This a model from the article: How yeast cells synchronize their glycolytic oscillations: a perturbation analytic treatment Bier M, Bakker BM, Westerhoff HV. Biophys. J2000 Mar;78(3):1087-93. 10692299, Abstract: Of all the lifeforms that ...
2024-09-02 | BIOMD0000000254 | BioModels
ModelsTeusink1998_Glycolysis_TurboDesign
This is the model described in the article: The danger of metabolic pathways with turbo design Teusink B, Walsh MC, van Dam K, Westerhoff HV Trends Biochem. Sci. 1998 May; Volume: 23 (Issue: 5 ): 162-9 9612078 , ...
2024-09-02 | BIOMD0000000253 | BioModels
ModelsHornberg2005 - MAPKsignalling
Hornberg2005 - MAPKsignalling Large model of the ERK signalling network. Results from this model were used to generate a simplified version of the network. This model is described in the article: Control of MAPK signalling: from complexity to what really matters. Hornberg JJ, Bind...
2024-09-02 | BIOMD0000000667 | BioModels
ModelsKoster1988_Histone_Expression
This model is described in the article: Kinetics of histone gene expression during early development of Xenopus laevis. Koster JG, Destrée OH and Westerhoff HV. J Theor Biol. 1988 Nov 21;135(2):139-67. PMID: 3267765 Abstract: ...
2005-01-01 | MODEL5954483266 | BioModels
ModelsKolodkin2013 - Nuclear receptor-mediated cortisol signalling network
Kolodkin2013 - Nuclear receptor-mediated cortisol signalling network This model is described in the article: Optimization of stress response through the nuclear receptor-mediated cortisol signalling network. Kolodkin A, Sahin N, Phillips A, Hood SR, Bruggeman FJ, Westerhoff ...
2024-09-02 | BIOMD0000000576 | BioModels
ModelsBruggeman2005_AmmoniumAssimilation
This a model from the article: The multifarious short-term regulation of ammonium assimilation of Escherichia coli: dissection using an in silico replica. Bruggeman FJ, Boogerd FC, Westerhoff HV. FEBS J. 2005 Apr;272(8):1965-85. 15819889 ...
2024-09-02 | BIOMD0000000217 | BioModels
ModelsHoefnagel2002_PyruvateBranches
This a model from the article: Metabolic engineering of lactic acid bacteria, the combined approach: kinetic modelling, metabolic control and experimental analysis. Hoefnagel MH, Starrenburg MJ, Martens DE, Hugenholtz J, Kleerebezem M, Van Swam II, Bongers R, Westerh...
2024-09-02 | BIOMD0000000017 | BioModels
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