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TranscriptomicsRetrotransposon Ty1 integration targets specifically positioned asymmetric nucleosomal DNA segments in tRNA hotspots
Using a TIP-seq protocol (specifically isolating transposon insertion junctions) we determined that the Ty1 retrotransposon targets tRNA genes and, in particular, we determined that the transposon inserts into nucleosomal DNA in an asymmetric pattern. TIP-seq recovery of transposon insertion junctio...
ORGANISM(S): Saccharomyces cerevisiae 
2012-01-01 | E-GEOD-33986 | biostudies-arrayexpress
TranscriptomicsTranscriptome-Wide Binding Sites for Components of the Saccharomyces cerevisiae Non-poly(A) termination Pathway: Nrd1, Nab3 and Sen1
We report here the transcriptome-wide distribution of yeast Rpb2, Sen1, Nrd1 and Nab3 binding sites. These data sets provide highresolution definition of non-poly(A) terminators, identify novel genes regulated by attenuation of nascent transcripts close to the promoter, and demonstrate the widesprea...
ORGANISM(S): Saccharomyces cerevisiae 
2011-09-08 | E-GEOD-31764 | biostudies-arrayexpress
TranscriptomicsTE-Array-- A high throughput tool to study transposon transcription
TE-Array is a custom Agilent microarray that probes for transposable elements in both sense and antisense orientations in humans and mice. TE-Array was used to study expression levels of transposable elements (TE) in a panel of normal mouse tissues. TE-Array comprises of 4 different custom Agilent 4...
ORGANISM(S): Mus musculus 
2013-11-16 | E-GEOD-52412 | biostudies-arrayexpress
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